Wall clock time and date at job start Tue Mar 31 2020 18:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34769 * 120.00176 * 2 1 4 4 O 1.21280 * 119.99965 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00444 * 180.02562 * 3 2 1 6 6 O 1.42896 * 109.47475 * 179.97438 * 5 3 2 7 7 C 1.35972 * 117.00069 * 179.97438 * 6 5 3 8 8 C 1.38722 * 119.98377 * 179.97438 * 7 6 5 9 9 C 1.38086 * 120.01531 * 180.02562 * 8 7 6 10 10 C 1.38849 * 119.98637 * 359.97438 * 9 8 7 11 11 N 1.40108 * 120.01747 * 180.02562 * 10 9 8 12 12 C 1.34775 * 120.00192 * 35.08459 * 11 10 9 13 13 O 1.21291 * 119.99833 * 355.38631 * 12 11 10 14 14 C 1.50695 * 120.00142 * 175.37480 * 12 11 10 15 15 H 1.09005 * 109.47252 * 40.00757 * 14 12 11 16 16 N 1.46903 * 109.47210 * 160.00895 * 14 12 11 17 17 C 1.52999 * 109.47397 * 280.00641 * 14 12 11 18 18 C 1.52999 * 109.47528 * 175.00154 * 17 14 12 19 19 C 1.50699 * 109.47339 * 180.02562 * 18 17 14 20 20 H 1.07998 * 119.99963 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99738 * 179.72644 * 19 18 17 22 22 N 1.31517 * 120.00568 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99837 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46944 * 359.97438 * 23 21 19 25 25 H 1.48508 * 109.47068 * 119.99807 * 23 21 19 26 26 H 1.48502 * 109.47172 * 239.99467 * 23 21 19 27 27 C 1.38844 * 119.96651 * 0.28207 * 10 9 8 28 28 C 1.38096 * 119.98593 * 359.44585 * 27 10 9 29 29 H 1.08999 * 109.46914 * 300.00219 * 1 2 3 30 30 H 1.08994 * 109.47040 * 60.00325 * 1 2 3 31 31 H 1.09004 * 109.46792 * 180.02562 * 1 2 3 32 32 H 0.97004 * 120.00139 * 179.97438 * 2 1 3 33 33 H 1.09001 * 109.47492 * 59.99343 * 5 3 2 34 34 H 1.09004 * 109.47390 * 299.99775 * 5 3 2 35 35 H 1.08002 * 119.99341 * 359.97438 * 8 7 6 36 36 H 1.08003 * 120.00741 * 179.97438 * 9 8 7 37 37 H 0.96999 * 120.00066 * 215.09318 * 11 10 9 38 38 H 1.00891 * 111.00277 * 59.99868 * 16 14 12 39 39 H 1.00896 * 111.00208 * 183.95496 * 16 14 12 40 40 H 1.08997 * 109.47079 * 54.99550 * 17 14 12 41 41 H 1.08999 * 109.47301 * 294.99925 * 17 14 12 42 42 H 1.08997 * 109.47434 * 59.99613 * 18 17 14 43 43 H 1.08999 * 109.46643 * 300.00174 * 18 17 14 44 44 H 0.96991 * 120.00416 * 179.97438 * 22 21 19 45 45 H 1.07997 * 120.00688 * 179.69808 * 27 10 9 46 46 H 1.07994 * 119.99051 * 180.27852 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2174 -0.0005 5 6 3.6458 1.1672 -0.0006 6 8 4.1222 2.5144 -0.0011 7 6 5.4702 2.6926 -0.0011 8 6 6.0001 3.9746 -0.0021 9 6 7.3689 4.1563 -0.0026 10 6 8.2151 3.0554 -0.0017 11 7 9.6041 3.2390 -0.0017 12 6 10.1470 4.2747 0.6684 13 8 9.4298 5.0950 1.2013 14 6 11.6450 4.4135 0.7557 15 1 12.0909 4.1495 -0.2033 16 7 11.9894 5.8018 1.0904 17 6 12.1813 3.4790 1.8420 18 6 13.7105 3.5268 1.8465 19 6 14.2388 2.6059 2.9160 20 1 13.5525 2.0431 3.5313 21 6 15.5984 2.4779 3.1056 22 7 16.4344 3.1591 2.3527 23 14 16.2533 1.3369 4.4318 24 1 15.1159 0.6914 5.1352 25 1 17.1076 0.2936 3.8096 26 1 17.0571 2.1191 5.4051 27 6 7.6840 1.7725 -0.0061 28 6 6.3149 1.5923 0.0002 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9500 -0.8401 0.0004 33 1 4.0089 0.6535 -0.8907 34 1 4.0096 0.6532 0.8892 35 1 5.3418 4.8309 -0.0033 36 1 7.7813 5.1545 -0.0038 37 1 10.1750 2.6208 -0.4841 38 1 11.5875 6.0707 1.9758 39 1 12.9894 5.9360 1.0916 40 1 11.8502 2.4602 1.6408 41 1 11.8051 3.7980 2.8140 42 1 14.0417 4.5456 2.0477 43 1 14.0868 3.2078 0.8745 44 1 17.3909 3.0694 2.4863 45 1 8.3416 0.9158 -0.0102 46 1 5.9018 0.5945 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261430473.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:19 Heat of formation + Delta-G solvation = -85.638007 kcal Electronic energy + Delta-G solvation = -27284.451004 eV Core-core repulsion = 23174.283727 eV Total energy + Delta-G solvation = -4110.167277 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.85997 -40.26028 -39.34815 -37.49635 -35.54853 -35.13456 -34.35464 -32.90058 -31.32126 -30.19121 -29.95098 -28.81438 -26.62767 -26.17901 -24.10905 -23.19431 -22.13157 -21.19304 -20.63573 -19.87964 -18.64344 -18.04260 -17.63672 -17.25179 -16.81447 -16.32575 -16.26760 -15.60672 -15.20869 -15.06372 -14.80055 -14.52446 -14.48841 -14.25915 -13.99824 -13.53663 -13.44845 -13.39029 -13.09829 -13.02607 -12.81526 -12.77109 -12.62301 -12.21608 -11.79893 -11.59055 -11.19003 -11.12090 -10.98049 -10.69738 -10.35917 -10.07342 -10.00735 -9.87957 -9.73168 -9.37660 -9.26654 -9.10052 -8.48416 -8.27311 -7.83682 -6.12616 -4.15888 1.18599 1.21211 2.05994 2.13736 2.75674 3.07279 3.23249 3.30200 3.31574 3.35234 3.66695 4.09844 4.35973 4.44546 4.54668 4.63537 4.69446 4.69959 4.85127 4.97383 5.09704 5.13949 5.23735 5.26397 5.29833 5.47037 5.49010 5.66836 5.73756 5.78027 5.84579 6.10010 6.20818 6.24896 6.39966 6.45496 6.72136 6.80859 6.84500 7.15576 7.32120 7.46369 7.52584 7.58682 7.64272 7.83199 7.84838 8.25475 8.28508 8.90287 9.49428 10.98270 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.001768 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.471670 B =15830.497780 C =16966.303254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.734 5.734 3 C 0.514 3.486 4 O -0.513 6.513 5 C 0.042 3.958 6 O -0.292 6.292 7 C 0.105 3.895 8 C -0.127 4.127 9 C -0.081 4.081 10 C 0.121 3.879 11 N -0.676 5.676 12 C 0.525 3.475 13 O -0.519 6.519 14 C 0.077 3.923 15 H 0.100 0.900 16 N -0.830 5.830 17 C -0.138 4.138 18 C 0.024 3.976 19 C -0.525 4.525 20 H 0.055 0.945 21 C 0.059 3.941 22 N -0.892 5.892 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 C -0.107 4.107 28 C -0.191 4.191 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.404 0.596 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.135 0.865 36 H 0.149 0.851 37 H 0.412 0.588 38 H 0.346 0.654 39 H 0.356 0.644 40 H 0.057 0.943 41 H 0.056 0.944 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.261 0.739 45 H 0.131 0.869 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.954 -9.059 -8.496 28.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.389 5.389 3 C 0.298 3.702 4 O -0.386 6.386 5 C -0.037 4.037 6 O -0.204 6.204 7 C 0.060 3.940 8 C -0.146 4.146 9 C -0.101 4.101 10 C 0.026 3.974 11 N -0.322 5.322 12 C 0.313 3.687 13 O -0.393 6.393 14 C -0.038 4.038 15 H 0.117 0.883 16 N -0.363 5.363 17 C -0.177 4.177 18 C -0.013 4.013 19 C -0.563 4.563 20 H 0.074 0.926 21 C -0.143 4.143 22 N -0.531 5.531 23 Si 0.720 3.280 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.128 4.128 28 C -0.210 4.210 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.238 0.762 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.153 0.847 36 H 0.167 0.833 37 H 0.248 0.752 38 H 0.160 0.840 39 H 0.172 0.828 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.071 0.929 45 H 0.149 0.851 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -27.217 -7.258 -8.778 29.504 hybrid contribution 1.602 -2.248 1.357 3.076 sum -25.615 -9.506 -7.421 28.312 Atomic orbital electron populations 1.21574 0.78692 1.02543 1.02692 1.45616 1.08102 1.08279 1.76859 1.20162 0.89077 0.84178 0.76745 1.90777 1.69870 1.31058 1.46942 1.22389 0.92280 0.85118 1.03944 1.86156 1.19399 1.25603 1.89277 1.18966 0.81409 0.94415 0.99235 1.20353 0.94733 0.94813 1.04678 1.21206 0.91501 0.99768 0.97624 1.17735 0.83400 0.93468 1.02756 1.43592 1.05100 1.30930 1.52562 1.21131 0.91491 0.79657 0.76375 1.90635 1.62851 1.40548 1.45224 1.21468 0.89344 0.91443 1.01578 0.88251 1.58743 1.18190 1.19331 1.40031 1.22397 1.01043 0.97822 0.96485 1.19114 0.87189 0.97462 0.97577 1.21210 0.91638 1.25534 1.17891 0.92646 1.25008 0.97111 0.95917 0.96233 1.69951 1.02615 1.41394 1.39167 0.86533 0.78968 0.80706 0.81789 1.19766 1.20935 1.20912 1.20720 0.94751 0.95722 1.01604 1.20940 0.93587 0.97728 1.08790 0.91957 0.91962 0.90268 0.76236 0.88908 0.88882 0.84747 0.83337 0.75204 0.84021 0.82809 0.92460 0.92554 0.96328 0.96233 0.92898 0.85150 0.85325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.36 10.70 59.85 0.64 1.00 16 2 N -0.73 -3.38 5.71 -67.08 -0.38 -3.77 16 3 C 0.51 4.42 7.91 -10.99 -0.09 4.34 16 4 O -0.51 -7.04 16.50 -14.35 -0.24 -7.28 16 5 C 0.04 0.29 5.22 36.00 0.19 0.48 16 6 O -0.29 -3.37 9.67 -39.56 -0.38 -3.75 16 7 C 0.11 1.21 6.69 -39.23 -0.26 0.94 16 8 C -0.13 -1.59 9.98 -39.46 -0.39 -1.98 16 9 C -0.08 -1.10 8.69 -39.41 -0.34 -1.45 16 10 C 0.12 1.54 6.30 -83.62 -0.53 1.02 16 11 N -0.68 -8.59 5.34 -9.83 -0.05 -8.64 16 12 C 0.53 8.29 6.92 -10.99 -0.08 8.21 16 13 O -0.52 -9.57 13.69 5.55 0.08 -9.49 16 14 C 0.08 1.24 3.21 -68.87 -0.22 1.01 16 15 H 0.10 1.47 8.14 -51.93 -0.42 1.05 16 16 N -0.83 -13.68 8.94 -5.65 -0.05 -13.73 16 17 C -0.14 -2.59 4.78 -26.73 -0.13 -2.72 16 18 C 0.02 0.56 4.74 -27.88 -0.13 0.43 16 19 C -0.52 -14.12 9.11 -34.44 -0.31 -14.43 16 20 H 0.06 1.47 7.74 -52.49 -0.41 1.07 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 23 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C -0.11 -1.12 9.96 -39.41 -0.39 -1.51 16 28 C -0.19 -1.82 9.03 -39.46 -0.36 -2.18 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 32 H 0.40 0.42 8.83 -40.82 -0.36 0.06 16 33 H 0.09 0.40 7.66 -51.93 -0.40 0.00 16 34 H 0.09 0.44 7.66 -51.93 -0.40 0.04 16 35 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 36 H 0.15 2.23 6.22 -52.48 -0.33 1.90 16 37 H 0.41 4.10 8.82 -40.82 -0.36 3.74 16 38 H 0.35 5.81 8.58 -39.30 -0.34 5.47 16 39 H 0.36 5.89 7.55 -39.29 -0.30 5.60 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.02 0.45 6.87 -51.93 -0.36 0.10 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 46 H 0.13 0.79 6.29 -52.49 -0.33 0.46 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -36.04 390.33 -8.44 -44.48 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.51 Total: 10.53 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.50 Total: -5.32 kcal Atomic # 7 Polarization: -51.24 SS G_CDS: 0.25 Total: -50.99 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.54 Total: -20.52 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.04 -8.44 -44.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261430473.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.161 kcal (2) G-P(sol) polarization free energy of solvation -36.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds