Wall clock time and date at job start Tue Mar 31 2020 18:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34769 * 120.00176 * 2 1 4 4 O 1.21280 * 119.99965 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00444 * 180.02562 * 3 2 1 6 6 O 1.42896 * 109.47475 * 179.97438 * 5 3 2 7 7 C 1.35972 * 117.00069 * 179.97438 * 6 5 3 8 8 C 1.38722 * 119.98377 * 179.97438 * 7 6 5 9 9 C 1.38086 * 120.01531 * 180.02562 * 8 7 6 10 10 C 1.38849 * 119.98637 * 359.97438 * 9 8 7 11 11 N 1.40108 * 120.01747 * 180.02562 * 10 9 8 12 12 C 1.34775 * 120.00192 * 35.08459 * 11 10 9 13 13 O 1.21291 * 119.99833 * 355.38631 * 12 11 10 14 14 C 1.50695 * 120.00142 * 175.37480 * 12 11 10 15 15 H 1.09005 * 109.47252 * 40.00757 * 14 12 11 16 16 N 1.46903 * 109.47210 * 160.00895 * 14 12 11 17 17 C 1.52999 * 109.47397 * 280.00641 * 14 12 11 18 18 C 1.52999 * 109.47528 * 175.00154 * 17 14 12 19 19 C 1.50699 * 109.47339 * 180.02562 * 18 17 14 20 20 H 1.07998 * 119.99963 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99738 * 179.72644 * 19 18 17 22 22 N 1.31517 * 120.00568 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 119.99837 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46944 * 359.97438 * 23 21 19 25 25 H 1.48508 * 109.47068 * 119.99807 * 23 21 19 26 26 H 1.48502 * 109.47172 * 239.99467 * 23 21 19 27 27 C 1.38844 * 119.96651 * 0.28207 * 10 9 8 28 28 C 1.38096 * 119.98593 * 359.44585 * 27 10 9 29 29 H 1.08999 * 109.46914 * 300.00219 * 1 2 3 30 30 H 1.08994 * 109.47040 * 60.00325 * 1 2 3 31 31 H 1.09004 * 109.46792 * 180.02562 * 1 2 3 32 32 H 0.97004 * 120.00139 * 179.97438 * 2 1 3 33 33 H 1.09001 * 109.47492 * 59.99343 * 5 3 2 34 34 H 1.09004 * 109.47390 * 299.99775 * 5 3 2 35 35 H 1.08002 * 119.99341 * 359.97438 * 8 7 6 36 36 H 1.08003 * 120.00741 * 179.97438 * 9 8 7 37 37 H 0.96999 * 120.00066 * 215.09318 * 11 10 9 38 38 H 1.00891 * 111.00277 * 59.99868 * 16 14 12 39 39 H 1.00896 * 111.00208 * 183.95496 * 16 14 12 40 40 H 1.08997 * 109.47079 * 54.99550 * 17 14 12 41 41 H 1.08999 * 109.47301 * 294.99925 * 17 14 12 42 42 H 1.08997 * 109.47434 * 59.99613 * 18 17 14 43 43 H 1.08999 * 109.46643 * 300.00174 * 18 17 14 44 44 H 0.96991 * 120.00416 * 179.97438 * 22 21 19 45 45 H 1.07997 * 120.00688 * 179.69808 * 27 10 9 46 46 H 1.07994 * 119.99051 * 180.27852 * 28 27 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5325 2.2174 -0.0005 5 6 3.6458 1.1672 -0.0006 6 8 4.1222 2.5144 -0.0011 7 6 5.4702 2.6926 -0.0011 8 6 6.0001 3.9746 -0.0021 9 6 7.3689 4.1563 -0.0026 10 6 8.2151 3.0554 -0.0017 11 7 9.6041 3.2390 -0.0017 12 6 10.1470 4.2747 0.6684 13 8 9.4298 5.0950 1.2013 14 6 11.6450 4.4135 0.7557 15 1 12.0909 4.1495 -0.2033 16 7 11.9894 5.8018 1.0904 17 6 12.1813 3.4790 1.8420 18 6 13.7105 3.5268 1.8465 19 6 14.2388 2.6059 2.9160 20 1 13.5525 2.0431 3.5313 21 6 15.5984 2.4779 3.1056 22 7 16.4344 3.1591 2.3527 23 14 16.2533 1.3369 4.4318 24 1 15.1159 0.6914 5.1352 25 1 17.1076 0.2936 3.8096 26 1 17.0571 2.1191 5.4051 27 6 7.6840 1.7725 -0.0061 28 6 6.3149 1.5923 0.0002 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.9500 -0.8401 0.0004 33 1 4.0089 0.6535 -0.8907 34 1 4.0096 0.6532 0.8892 35 1 5.3418 4.8309 -0.0033 36 1 7.7813 5.1545 -0.0038 37 1 10.1750 2.6208 -0.4841 38 1 11.5875 6.0707 1.9758 39 1 12.9894 5.9360 1.0916 40 1 11.8502 2.4602 1.6408 41 1 11.8051 3.7980 2.8140 42 1 14.0417 4.5456 2.0477 43 1 14.0868 3.2078 0.8745 44 1 17.3909 3.0694 2.4863 45 1 8.3416 0.9158 -0.0102 46 1 5.9018 0.5945 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261430473.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:18 Heat of formation + Delta-G solvation = -113.606422 kcal Electronic energy + Delta-G solvation = -27285.663805 eV Core-core repulsion = 23174.283727 eV Total energy + Delta-G solvation = -4111.380078 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.78205 -41.14385 -40.19357 -38.44336 -37.03079 -35.71420 -35.41145 -34.83341 -32.14921 -31.68345 -30.90137 -29.70007 -27.98970 -26.83320 -25.71588 -24.05770 -23.25267 -22.23178 -21.71271 -21.08451 -19.40254 -19.03708 -18.57450 -18.43525 -18.01620 -17.42057 -16.99817 -16.60640 -16.38554 -16.18623 -15.89657 -15.78757 -15.75306 -15.26447 -14.85209 -14.80960 -14.70183 -14.30413 -14.09593 -13.99313 -13.90029 -13.65486 -13.45691 -13.42765 -13.10515 -12.95293 -12.69769 -12.50205 -12.36179 -11.99553 -11.80303 -11.67071 -11.27566 -11.06559 -10.94402 -10.71833 -10.55453 -10.22723 -10.00244 -9.66058 -8.75410 -8.20798 -6.30830 0.28119 0.33874 1.39139 1.41278 1.45211 1.52190 1.55301 1.58255 2.01448 2.40602 2.71180 2.77374 3.13288 3.61413 3.66926 3.73679 3.86934 3.95815 4.07999 4.11885 4.13822 4.23192 4.28907 4.41817 4.46712 4.59462 4.60556 4.66816 4.82659 4.86309 4.94883 5.02738 5.09644 5.26210 5.32625 5.34727 5.45553 5.48383 5.66957 5.81599 5.82002 6.06153 6.22227 6.31232 6.44449 6.47030 6.50388 6.85101 7.13653 7.15125 7.38490 8.90043 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018896 B = 0.001768 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.471670 B =15830.497780 C =16966.303254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.714 5.714 3 C 0.507 3.493 4 O -0.578 6.578 5 C 0.035 3.965 6 O -0.320 6.320 7 C 0.106 3.894 8 C -0.147 4.147 9 C -0.097 4.097 10 C 0.097 3.903 11 N -0.660 5.660 12 C 0.526 3.474 13 O -0.551 6.551 14 C 0.084 3.916 15 H 0.116 0.884 16 N -0.831 5.831 17 C -0.121 4.121 18 C 0.028 3.972 19 C -0.544 4.544 20 H 0.055 0.945 21 C 0.006 3.994 22 N -0.926 5.926 23 Si 0.957 3.043 24 H -0.266 1.266 25 H -0.277 1.277 26 H -0.282 1.282 27 C -0.097 4.097 28 C -0.179 4.179 29 H 0.047 0.953 30 H 0.049 0.951 31 H 0.117 0.883 32 H 0.425 0.575 33 H 0.129 0.871 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.426 0.574 38 H 0.344 0.656 39 H 0.354 0.646 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.002 0.998 43 H 0.005 0.995 44 H 0.263 0.737 45 H 0.161 0.839 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.621 -12.836 -8.549 30.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.368 5.368 3 C 0.293 3.707 4 O -0.457 6.457 5 C -0.043 4.043 6 O -0.234 6.234 7 C 0.060 3.940 8 C -0.166 4.166 9 C -0.118 4.118 10 C 0.003 3.997 11 N -0.306 5.306 12 C 0.314 3.686 13 O -0.427 6.427 14 C -0.031 4.031 15 H 0.134 0.866 16 N -0.363 5.363 17 C -0.160 4.160 18 C -0.009 4.009 19 C -0.582 4.582 20 H 0.073 0.927 21 C -0.192 4.192 22 N -0.566 5.566 23 Si 0.783 3.217 24 H -0.190 1.190 25 H -0.203 1.203 26 H -0.208 1.208 27 C -0.117 4.117 28 C -0.198 4.198 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.136 0.864 32 H 0.262 0.738 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.142 0.858 37 H 0.265 0.735 38 H 0.157 0.843 39 H 0.170 0.830 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.072 0.928 45 H 0.178 0.822 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -27.895 -11.132 -8.855 31.312 hybrid contribution 1.679 -1.149 1.336 2.434 sum -26.215 -12.281 -7.518 29.910 Atomic orbital electron populations 1.21708 0.78306 1.04608 1.01411 1.45527 1.08459 1.08155 1.74669 1.20625 0.89976 0.84205 0.75846 1.90755 1.71145 1.33425 1.50346 1.22767 0.90985 0.83535 1.07009 1.86126 1.19305 1.28700 1.89225 1.19029 0.81909 0.94452 0.98597 1.20371 0.94414 0.95901 1.05920 1.21038 0.92213 0.99279 0.99241 1.17927 0.82951 0.94383 1.04438 1.43368 1.05572 1.30067 1.51636 1.20957 0.90970 0.80133 0.76544 1.90635 1.63306 1.41931 1.46856 1.21395 0.89967 0.90433 1.01283 0.86616 1.58756 1.17980 1.19659 1.39871 1.22136 0.97688 0.99286 0.96931 1.18987 0.90267 0.95759 0.95862 1.21656 0.92053 1.25916 1.18573 0.92668 1.25839 0.97540 0.97454 0.98390 1.70060 1.02916 1.42865 1.40781 0.85512 0.78398 0.78768 0.79044 1.18965 1.20251 1.20757 1.21060 0.95624 0.95321 0.99710 1.21368 0.92878 0.98985 1.06521 0.93388 0.93233 0.86447 0.73754 0.85361 0.85792 0.85405 0.85761 0.73503 0.84296 0.83021 0.91156 0.93828 0.97945 0.97621 0.92771 0.82154 0.80962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.54 10.70 127.77 1.37 1.91 16 2 N -0.71 -4.80 5.71 -484.54 -2.77 -7.57 16 3 C 0.51 8.00 7.91 87.66 0.69 8.70 16 4 O -0.58 -16.23 16.50 16.01 0.26 -15.97 16 5 C 0.03 0.38 5.22 71.23 0.37 0.75 16 6 O -0.32 -6.98 9.67 -74.20 -0.72 -7.70 16 7 C 0.11 2.26 6.69 22.50 0.15 2.41 16 8 C -0.15 -3.78 9.98 22.35 0.22 -3.56 16 9 C -0.10 -2.73 8.69 22.38 0.19 -2.53 16 10 C 0.10 2.35 6.30 38.11 0.24 2.59 16 11 N -0.66 -15.87 5.34 -303.40 -1.62 -17.49 16 12 C 0.53 16.43 6.92 87.66 0.61 17.03 16 13 O -0.55 -20.77 13.69 -3.06 -0.04 -20.81 16 14 C 0.08 2.68 3.21 44.17 0.14 2.82 16 15 H 0.12 3.29 8.14 -2.38 -0.02 3.27 16 16 N -0.83 -27.70 8.94 -171.80 -1.54 -29.23 16 17 C -0.12 -4.47 4.78 30.59 0.15 -4.33 16 18 C 0.03 1.35 4.74 29.85 0.14 1.49 16 19 C -0.54 -29.16 9.11 25.60 0.23 -28.93 16 20 H 0.06 2.89 7.74 -2.91 -0.02 2.87 16 21 C 0.01 0.34 5.46 84.65 0.46 0.81 16 22 N -0.93 -53.37 13.29 21.45 0.28 -53.08 16 23 Si 0.96 42.57 29.54 68.60 2.03 44.60 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 26 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 27 C -0.10 -1.68 9.96 22.38 0.22 -1.46 16 28 C -0.18 -2.70 9.03 22.35 0.20 -2.50 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.12 -0.15 8.14 -2.38 -0.02 -0.16 16 32 H 0.42 -0.78 8.83 -92.71 -0.82 -1.59 16 33 H 0.13 0.47 7.66 -2.39 -0.02 0.45 16 34 H 0.12 0.58 7.66 -2.38 -0.02 0.56 16 35 H 0.13 3.27 8.06 -2.91 -0.02 3.24 16 36 H 0.12 4.02 6.22 -2.91 -0.02 4.00 16 37 H 0.43 7.50 8.82 -92.71 -0.82 6.69 16 38 H 0.34 11.81 8.58 -89.70 -0.77 11.04 16 39 H 0.35 11.96 7.55 -89.70 -0.68 11.28 16 40 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.00 0.11 6.87 -2.39 -0.02 0.10 16 43 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 44 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 45 H 0.16 1.82 8.06 -2.91 -0.02 1.79 16 46 H 0.17 1.03 6.29 -2.91 -0.02 1.01 16 Total: -1.00 -81.55 390.33 -0.74 -82.29 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -2.03 Total: 29.77 kcal Atomic # 6 Polarization: -10.21 SS G_CDS: 5.40 Total: -4.81 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -5.64 Total: -107.38 kcal Atomic # 8 Polarization: -43.98 SS G_CDS: -0.50 Total: -44.48 kcal Atomic # 14 Polarization: 42.57 SS G_CDS: 2.03 Total: 44.60 kcal Total: -81.55 -0.74 -82.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261430473.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.313 kcal (2) G-P(sol) polarization free energy of solvation -81.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds