Wall clock time and date at job start Tue Mar 31 2020 18:59:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42903 * 1
3 3 C 1.35668 * 116.99907 * 2 1
4 4 C 1.38922 * 119.68328 * 179.97438 * 3 2 1
5 5 C 1.38380 * 119.11220 * 179.97438 * 4 3 2
6 6 C 1.50703 * 120.76073 * 179.97438 * 5 4 3
7 7 O 1.42897 * 109.47251 * 89.99291 * 6 5 4
8 8 C 1.42902 * 113.99881 * 180.02562 * 7 6 5
9 9 C 1.50701 * 109.47019 * 180.02562 * 8 7 6
10 10 O 1.21284 * 120.00106 * 359.97438 * 9 8 7
11 11 N 1.34780 * 119.99790 * 180.02562 * 9 8 7
12 12 C 1.46499 * 119.99663 * 179.97438 * 11 9 8
13 13 H 1.08997 * 110.64569 * 36.68070 * 12 11 9
14 14 C 1.55154 * 110.72111 * 160.02054 * 12 11 9
15 15 C 1.54910 * 101.58642 * 153.86254 * 14 12 11
16 16 N 1.47427 * 104.82948 * 322.99299 * 15 14 12
17 17 C 1.36941 * 125.64787 * 204.09319 * 16 15 14
18 18 H 1.07995 * 119.99781 * 180.02562 * 17 16 15
19 19 C 1.38810 * 119.99617 * 0.03752 * 17 16 15
20 20 N 1.31615 * 120.00553 * 0.02562 * 19 17 16
21 21 Si 1.86799 * 119.99684 * 180.02562 * 19 17 16
22 22 H 1.48495 * 109.47467 * 0.02562 * 21 19 17
23 23 H 1.48502 * 109.47306 * 120.00363 * 21 19 17
24 24 H 1.48501 * 109.46957 * 239.99962 * 21 19 17
25 25 C 1.47017 * 108.70401 * 24.12530 * 16 15 14
26 26 C 1.38829 * 118.48737 * 359.97438 * 5 4 3
27 27 C 1.38057 * 119.28722 * 0.02562 * 26 5 4
28 28 N 1.31968 * 120.83055 * 359.73721 * 27 26 5
29 29 H 1.09002 * 109.47382 * 300.00092 * 1 2 3
30 30 H 1.09001 * 109.46938 * 180.02562 * 1 2 3
31 31 H 1.09004 * 109.46926 * 60.00199 * 1 2 3
32 32 H 1.07997 * 120.44591 * 0.02562 * 4 3 2
33 33 H 1.08996 * 109.47309 * 209.99441 * 6 5 4
34 34 H 1.09004 * 109.46299 * 329.99350 * 6 5 4
35 35 H 1.09000 * 109.47091 * 299.99992 * 8 7 6
36 36 H 1.08997 * 109.47183 * 60.00220 * 8 7 6
37 37 H 0.97002 * 120.00026 * 359.97438 * 11 9 8
38 38 H 1.09001 * 111.00649 * 271.94264 * 14 12 11
39 39 H 1.09005 * 111.00459 * 35.78686 * 14 12 11
40 40 H 1.08999 * 110.36761 * 204.15628 * 15 14 12
41 41 H 1.08999 * 110.36208 * 81.82610 * 15 14 12
42 42 H 0.97000 * 120.00439 * 180.02562 * 20 19 17
43 43 H 1.09004 * 109.88791 * 239.52234 * 25 16 15
44 44 H 1.09001 * 109.88108 * 118.35904 * 25 16 15
45 45 H 1.08000 * 120.36047 * 179.97438 * 26 5 4
46 46 H 1.07992 * 119.58134 * 179.97438 * 27 26 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0449 1.2088 0.0000
4 6 3.4326 1.2739 0.0005
5 6 4.0485 2.5131 0.0000
6 6 5.5512 2.6269 0.0011
7 8 6.0274 2.6616 -1.3457
8 6 7.4480 2.7685 -1.4574
9 6 7.8366 2.7972 -2.9132
10 8 6.9813 2.7319 -3.7706
11 7 9.1348 2.8942 -3.2623
12 6 9.5127 2.9215 -4.6774
13 1 8.7783 3.4770 -5.2607
14 6 10.9309 3.5250 -4.8555
15 6 11.3869 2.8627 -6.1795
16 7 10.8388 1.4951 -6.1257
17 6 11.3313 0.4108 -6.8016
18 1 10.8560 -0.5532 -6.6953
19 6 12.4414 0.5506 -7.6230
20 7 13.0211 1.7252 -7.7519
21 14 13.1128 -0.9285 -8.5456
22 1 12.2880 -2.1231 -8.2330
23 1 13.0664 -0.6638 -10.0061
24 1 14.5176 -1.1742 -8.1315
25 6 9.6754 1.4886 -5.2269
26 6 3.2506 3.6491 -0.0016
27 6 1.8770 3.5097 -0.0021
28 7 1.3186 2.3139 -0.0062
29 1 -0.3634 0.5138 0.8900
30 1 -0.3633 -1.0277 0.0005
31 1 -0.3633 0.5138 -0.8900
32 1 4.0229 0.3695 0.0005
33 1 5.8459 3.5423 0.5143
34 1 5.9802 1.7673 0.5162
35 1 7.7823 3.6867 -0.9744
36 1 7.9161 1.9117 -0.9729
37 1 9.8189 2.9461 -2.5765
38 1 10.8843 4.6093 -4.9567
39 1 11.5836 3.2390 -4.0305
40 1 12.4751 2.8333 -6.2339
41 1 10.9778 3.4019 -7.0339
42 1 13.7966 1.8229 -8.3263
43 1 9.8459 0.7935 -4.4047
44 1 8.7815 1.1998 -5.7797
45 1 3.6994 4.6314 -0.0017
46 1 1.2518 4.3902 -0.0029
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001266324768.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:59:20
Heat of formation + Delta-G solvation = -43.580348 kcal
Electronic energy + Delta-G solvation = -27522.856313 eV
Core-core repulsion = 23414.512793 eV
Total energy + Delta-G solvation = -4108.343520 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.77 seconds
Orbital eigenvalues (eV)
-40.98001 -39.78349 -38.55160 -37.78173 -36.95463 -34.03434 -33.53140 -31.94828
-31.08482 -29.49182 -28.75229 -27.75033 -26.92900 -26.05409 -24.34434 -23.78717
-22.13187 -20.91652 -20.45724 -19.75171 -18.43101 -17.57775 -17.25336 -17.15016
-16.57578 -16.42950 -16.28029 -16.17693 -15.72844 -15.02575 -14.74004 -14.62727
-14.42155 -14.12354 -13.92421 -13.70582 -13.36533 -12.95169 -12.69040 -12.41524
-12.40025 -12.08539 -11.99070 -11.89311 -11.63562 -11.53245 -11.10946 -10.94593
-10.81471 -10.50571 -10.18767 -10.09492 -10.08719 -10.01535 -9.84106 -9.66538
-9.52346 -8.84247 -8.78590 -8.66903 -6.84720 -5.66847 -3.08230 0.73031
0.86708 2.68137 2.72477 2.85052 3.39765 3.42473 3.45914 3.48359
3.85466 3.99897 4.36639 4.48828 4.52065 4.68236 4.73014 4.77135
4.88258 4.93262 4.95732 4.99055 4.99675 5.06547 5.29641 5.32106
5.38250 5.43821 5.51353 5.52130 5.77733 5.79837 5.91983 6.03783
6.17608 6.36885 6.45724 6.51976 6.64058 6.75907 6.89349 7.00509
7.45965 7.49037 7.60889 7.66918 7.82179 8.32212 8.38513 9.20965
9.81424 10.45317 11.37508
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.019318 B = 0.001805 C = 0.001694
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1449.113527 B =15507.550096 C =16528.183528
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.041 3.959
2 O -0.308 6.308
3 C 0.318 3.682
4 C -0.166 4.166
5 C -0.010 4.010
6 C 0.100 3.900
7 O -0.353 6.353
8 C 0.044 3.956
9 C 0.510 3.490
10 O -0.518 6.518
11 N -0.715 5.715
12 C 0.133 3.867
13 H 0.091 0.909
14 C -0.149 4.149
15 C 0.153 3.847
16 N -0.604 5.604
17 C -0.219 4.219
18 H 0.078 0.922
19 C -0.013 4.013
20 N -0.924 5.924
21 Si 0.916 3.084
22 H -0.280 1.280
23 H -0.290 1.290
24 H -0.290 1.290
25 C 0.128 3.872
26 C -0.188 4.188
27 C 0.137 3.863
28 N -0.538 5.538
29 H 0.058 0.942
30 H 0.096 0.904
31 H 0.059 0.941
32 H 0.144 0.856
33 H 0.069 0.931
34 H 0.068 0.932
35 H 0.081 0.919
36 H 0.082 0.918
37 H 0.398 0.602
38 H 0.065 0.935
39 H 0.065 0.935
40 H 0.111 0.889
41 H 0.016 0.984
42 H 0.252 0.748
43 H 0.025 0.975
44 H 0.028 0.972
45 H 0.140 0.860
46 H 0.162 0.838
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.706 5.224 22.483 29.091
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 O -0.215 6.215
3 C 0.139 3.861
4 C -0.187 4.187
5 C -0.018 4.018
6 C 0.023 3.977
7 O -0.271 6.271
8 C -0.036 4.036
9 C 0.294 3.706
10 O -0.393 6.393
11 N -0.368 5.368
12 C 0.029 3.971
13 H 0.109 0.891
14 C -0.188 4.188
15 C 0.027 3.973
16 N -0.330 5.330
17 C -0.348 4.348
18 H 0.096 0.904
19 C -0.208 4.208
20 N -0.573 5.573
21 Si 0.746 3.254
22 H -0.205 1.205
23 H -0.217 1.217
24 H -0.218 1.218
25 C 0.001 3.999
26 C -0.208 4.208
27 C -0.019 4.019
28 N -0.262 5.262
29 H 0.077 0.923
30 H 0.114 0.886
31 H 0.078 0.922
32 H 0.162 0.838
33 H 0.087 0.913
34 H 0.086 0.914
35 H 0.099 0.901
36 H 0.100 0.900
37 H 0.232 0.768
38 H 0.083 0.917
39 H 0.084 0.916
40 H 0.129 0.871
41 H 0.034 0.966
42 H 0.062 0.938
43 H 0.043 0.957
44 H 0.046 0.954
45 H 0.158 0.842
46 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges -19.118 4.738 21.530 29.180
hybrid contribution 1.422 -0.516 0.032 1.513
sum -17.696 4.222 21.562 28.211
Atomic orbital electron populations
1.22868 0.77101 1.03033 1.02451 1.86249 1.23017 1.24423 1.87779
1.19774 0.89231 0.84770 0.92310 1.20970 0.92099 0.99164 1.06459
1.19717 0.94893 0.92400 0.94781 1.21345 0.89609 1.01844 0.84868
1.88110 1.19546 1.95050 1.24433 1.22270 0.83219 1.02598 0.95508
1.20140 0.83087 0.77224 0.90160 1.90756 1.49401 1.47558 1.51554
1.45965 1.06775 1.74950 1.09124 1.22113 0.97212 0.98058 0.79728
0.89078 1.23326 0.93988 0.99382 1.02084 1.21952 1.02354 0.83253
0.89697 1.44466 1.30060 1.06371 1.52141 1.19144 1.08384 0.87891
1.19348 0.90394 1.24788 0.98544 0.97202 1.00266 1.69771 1.23830
1.21285 1.42394 0.85974 0.78541 0.81473 0.79386 1.20515 1.21730
1.21752 1.21609 0.91299 0.93509 0.93470 1.21922 0.94732 0.99468
1.04701 1.22391 0.92692 0.93656 0.93121 1.67301 1.41103 0.98917
1.18877 0.92346 0.88551 0.92196 0.83832 0.91337 0.91419 0.90136
0.89995 0.76759 0.91679 0.91597 0.87128 0.96622 0.93751 0.95679
0.95448 0.84223 0.82079
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.04 0.30 10.38 101.05 1.05 1.35 16
2 O -0.31 -3.29 10.48 -18.71 -0.20 -3.49 16
3 C 0.32 3.57 7.49 -17.12 -0.13 3.44 16
4 C -0.17 -1.73 9.75 -39.28 -0.38 -2.11 16
5 C -0.01 -0.10 5.54 -104.35 -0.58 -0.68 16
6 C 0.10 0.80 6.11 36.01 0.22 1.02 16
7 O -0.35 -4.29 9.86 -55.14 -0.54 -4.83 16
8 C 0.04 0.44 6.42 36.01 0.23 0.67 16
9 C 0.51 7.54 7.90 -10.98 -0.09 7.46 16
10 O -0.52 -10.39 16.23 -14.36 -0.23 -10.62 16
11 N -0.72 -9.92 5.13 -52.03 -0.27 -10.19 16
12 C 0.13 2.40 3.24 -66.10 -0.21 2.18 16
13 H 0.09 1.77 7.69 -51.93 -0.40 1.37 16
14 C -0.15 -2.64 6.69 -24.58 -0.16 -2.80 16
15 C 0.15 3.64 5.89 -2.53 -0.01 3.63 16
16 N -0.60 -15.67 3.39 -170.07 -0.58 -16.25 16
17 C -0.22 -6.20 10.27 -15.06 -0.15 -6.36 16
18 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16
19 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16
20 N -0.92 -26.76 10.09 55.49 0.56 -26.20 16
21 Si 0.92 22.21 29.55 -169.99 -5.02 17.19 16
22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
23 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16
24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16
25 C 0.13 2.83 6.99 -3.07 -0.02 2.81 16
26 C -0.19 -1.57 9.81 -39.43 -0.39 -1.96 16
27 C 0.14 1.17 11.18 -17.56 -0.20 0.98 16
28 N -0.54 -5.76 9.22 -13.33 -0.12 -5.88 16
29 H 0.06 0.41 8.11 -51.93 -0.42 -0.01 16
30 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16
31 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16
32 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16
33 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 16
34 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16
35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16
36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
37 H 0.40 4.12 8.52 -40.82 -0.35 3.78 16
38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16
39 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16
40 H 0.11 2.93 5.87 -51.93 -0.30 2.63 16
41 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16
42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16
43 H 0.03 0.55 8.03 -51.93 -0.42 0.13 16
44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16
45 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16
46 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16
LS Contribution 388.10 15.07 5.85 5.85
Total: -1.00 -36.48 388.10 -8.40 -44.88
By element:
Atomic # 1 Polarization: 7.30 SS G_CDS: -6.92 Total: 0.38 kcal
Atomic # 6 Polarization: 10.10 SS G_CDS: -0.92 Total: 9.17 kcal
Atomic # 7 Polarization: -58.12 SS G_CDS: -0.41 Total: -58.53 kcal
Atomic # 8 Polarization: -17.97 SS G_CDS: -0.97 Total: -18.94 kcal
Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal
Total LS contribution 5.85 Total: 5.85 kcal
Total: -36.48 -8.40 -44.88 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001266324768.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 1.296 kcal
(2) G-P(sol) polarization free energy of solvation -36.478 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.182 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.876 kcal
(6) G-S(sol) free energy of system = (1) + (5) -43.580 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.77 seconds