Wall clock time and date at job start Tue Mar 31 2020 18:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 110.99757 * 2 1 4 4 C 1.50695 * 109.47355 * 66.04707 * 3 2 1 5 5 O 1.21290 * 119.99950 * 359.97438 * 4 3 2 6 6 N 1.34771 * 120.00087 * 180.02562 * 4 3 2 7 7 C 1.37097 * 120.00383 * 179.97438 * 6 4 3 8 8 H 1.08003 * 119.99603 * 359.97438 * 7 6 4 9 9 C 1.38949 * 120.00707 * 179.97438 * 7 6 4 10 10 N 1.31413 * 119.99454 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 120.00495 * 179.97438 * 9 7 6 12 12 H 1.48505 * 109.47062 * 0.02562 * 11 9 7 13 13 H 1.48506 * 109.47061 * 120.00329 * 11 9 7 14 14 H 1.48495 * 109.47444 * 240.00622 * 11 9 7 15 15 C 1.46899 * 111.00095 * 236.04304 * 2 1 3 16 16 C 1.52995 * 109.47435 * 293.95351 * 15 2 1 17 17 H 1.09003 * 110.88483 * 51.11933 * 16 15 2 18 18 C 1.55153 * 111.00679 * 175.00066 * 16 15 2 19 19 C 1.54323 * 103.10236 * 153.52709 * 18 16 15 20 20 N 1.47317 * 107.12157 * 338.02434 * 19 18 16 21 21 C 1.34780 * 125.61861 * 178.89316 * 20 19 18 22 22 O 1.21695 * 120.00267 * 179.77205 * 21 20 19 23 23 C 1.46657 * 119.99725 * 359.77778 * 21 20 19 24 24 C 1.36544 * 125.98562 * 180.02562 * 23 21 20 25 25 C 1.40363 * 106.70801 * 179.97438 * 24 23 21 26 26 C 1.35139 * 107.11414 * 359.97438 * 25 24 23 27 27 O 1.33926 * 108.76550 * 359.75289 * 26 25 24 28 28 C 1.47427 * 108.73481 * 358.69551 * 20 19 18 29 29 H 1.08994 * 109.47067 * 183.95331 * 1 2 3 30 30 H 1.09000 * 109.47313 * 303.95726 * 1 2 3 31 31 H 1.09002 * 109.47157 * 63.95928 * 1 2 3 32 32 H 1.09004 * 109.46915 * 186.04428 * 3 2 1 33 33 H 1.08997 * 109.47089 * 306.04113 * 3 2 1 34 34 H 0.96999 * 120.00300 * 359.97438 * 6 4 3 35 35 H 0.96998 * 120.00132 * 179.97438 * 10 9 7 36 36 H 1.09008 * 109.46847 * 173.95129 * 15 2 1 37 37 H 1.08998 * 109.47280 * 53.95802 * 15 2 1 38 38 H 1.09002 * 110.72030 * 271.97975 * 18 16 15 39 39 H 1.09003 * 110.72184 * 35.07626 * 18 16 15 40 40 H 1.09000 * 109.88167 * 97.31380 * 19 18 16 41 41 H 1.09003 * 109.88497 * 218.47738 * 19 18 16 42 42 H 1.07999 * 126.64649 * 359.95389 * 24 23 21 43 43 H 1.07992 * 126.44569 * 179.97438 * 25 24 23 44 44 H 1.07993 * 125.61311 * 180.02562 * 26 25 24 45 45 H 1.08996 * 110.37285 * 265.44500 * 28 20 19 46 46 H 1.09000 * 110.45726 * 143.17011 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 8 1.0047 1.4456 2.1407 6 7 2.0179 3.3202 1.5232 7 6 1.6914 3.9352 2.7042 8 1 1.1284 3.3995 3.4542 9 6 2.0846 5.2475 2.9363 10 7 2.7692 5.8994 2.0234 11 14 1.6390 6.0856 4.5451 12 1 0.8710 5.1432 5.3980 13 1 2.8803 6.4927 5.2515 14 1 0.8121 7.2867 4.2651 15 6 1.9955 -0.7660 -1.1375 16 6 1.6315 -2.2426 -0.9703 17 1 0.5660 -2.3603 -0.7732 18 6 2.0614 -3.0656 -2.2133 19 6 2.2689 -4.4832 -1.6396 20 7 2.5015 -4.3356 -0.1924 21 6 2.7054 -5.3453 0.6768 22 8 2.8920 -5.1054 1.8552 23 6 2.7027 -6.7330 0.2024 24 6 2.8949 -7.8444 0.9720 25 6 2.8105 -8.9504 0.1119 26 6 2.5729 -8.4717 -1.1293 27 8 2.5028 -7.1356 -1.0697 28 6 2.4789 -2.9011 0.1469 29 1 -0.3633 -1.0252 0.0708 30 1 -0.3634 0.5740 0.8524 31 1 -0.3633 0.4512 -0.9234 32 1 3.0797 1.3445 -0.1082 33 1 1.5611 1.9273 -0.8309 34 1 2.5232 3.8015 0.8494 35 1 3.0435 6.8156 2.1851 36 1 3.0798 -0.6611 -1.1755 37 1 1.5612 -0.3873 -2.0628 38 1 1.2738 -3.0660 -2.9668 39 1 2.9913 -2.6782 -2.6297 40 1 1.3778 -5.0868 -1.8116 41 1 3.1330 -4.9512 -2.1114 42 1 3.0770 -7.8678 2.0363 43 1 2.9157 -9.9886 0.3898 44 1 2.4542 -9.0686 -2.0214 45 1 3.4903 -2.4948 0.1453 46 1 2.0106 -2.7469 1.1190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267625266.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:54 Heat of formation + Delta-G solvation = -36.670877 kcal Electronic energy + Delta-G solvation = -28325.386584 eV Core-core repulsion = 24217.342681 eV Total energy + Delta-G solvation = -4108.043903 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.00647 -40.10341 -38.69457 -37.81924 -36.10844 -33.85846 -33.46441 -32.35625 -31.21028 -30.22152 -29.56728 -27.81877 -26.70294 -25.01374 -24.09387 -22.43385 -22.14697 -21.87631 -20.21457 -20.00557 -19.11971 -18.10791 -17.79161 -16.92874 -16.76578 -16.46998 -15.85541 -15.48491 -15.20593 -15.08072 -14.61348 -14.39242 -13.91387 -13.72922 -13.63696 -13.48125 -13.38489 -13.29458 -13.04039 -13.02195 -12.79250 -12.38361 -12.13060 -11.79513 -11.57395 -11.37747 -11.28651 -11.17458 -11.03472 -10.88429 -10.62612 -10.43854 -10.41108 -10.31692 -10.19549 -9.45817 -9.14270 -8.78714 -8.42309 -7.94900 -7.82851 -6.39187 -3.79622 0.76541 2.01267 2.31784 2.82986 2.96264 3.18523 3.29018 3.36526 3.88559 3.94423 4.15051 4.26418 4.32788 4.50643 4.55819 4.64664 4.72878 4.96826 5.10491 5.13665 5.25205 5.27579 5.31896 5.39290 5.42705 5.46768 5.53648 5.57739 5.63020 5.71689 5.73586 5.78818 5.95426 5.96412 5.98673 6.01754 6.03529 6.16309 6.31249 6.52304 6.58689 7.20802 7.27619 7.39684 7.58325 7.82995 8.09820 8.64964 9.21423 9.57719 10.09761 10.78727 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023955 B = 0.001979 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.565447 B =14148.039350 C =14910.985995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.519 5.519 3 C 0.046 3.954 4 C 0.444 3.556 5 O -0.576 6.576 6 N -0.566 5.566 7 C -0.297 4.297 8 H 0.104 0.896 9 C 0.021 3.979 10 N -0.903 5.903 11 Si 0.929 3.071 12 H -0.268 1.268 13 H -0.282 1.282 14 H -0.282 1.282 15 C 0.065 3.935 16 C -0.095 4.095 17 H 0.090 0.910 18 C -0.128 4.128 19 C 0.104 3.896 20 N -0.612 5.612 21 C 0.612 3.388 22 O -0.515 6.515 23 C -0.070 4.070 24 C -0.124 4.124 25 C -0.224 4.224 26 C -0.014 4.014 27 O -0.161 6.161 28 C 0.121 3.879 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.014 0.986 32 H 0.088 0.912 33 H 0.047 0.953 34 H 0.392 0.608 35 H 0.270 0.730 36 H 0.077 0.923 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.160 0.840 43 H 0.156 0.844 44 H 0.209 0.791 45 H 0.074 0.926 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.421 -25.035 -14.778 29.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.242 5.242 3 C -0.085 4.085 4 C 0.230 3.770 5 O -0.460 6.460 6 N -0.203 5.203 7 C -0.426 4.426 8 H 0.121 0.879 9 C -0.180 4.180 10 N -0.544 5.544 11 Si 0.756 3.244 12 H -0.192 1.192 13 H -0.208 1.208 14 H -0.208 1.208 15 C -0.063 4.063 16 C -0.114 4.114 17 H 0.108 0.892 18 C -0.166 4.166 19 C -0.018 4.018 20 N -0.345 5.345 21 C 0.400 3.600 22 O -0.393 6.393 23 C -0.122 4.122 24 C -0.144 4.144 25 C -0.243 4.243 26 C -0.084 4.084 27 O -0.056 6.056 28 C -0.001 4.001 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.032 0.968 32 H 0.106 0.894 33 H 0.065 0.935 34 H 0.225 0.775 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.178 0.822 43 H 0.174 0.826 44 H 0.226 0.774 45 H 0.092 0.908 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 0.278 -25.164 -13.313 28.470 hybrid contribution -0.037 0.883 -0.458 0.996 sum 0.242 -24.281 -13.771 27.915 Atomic orbital electron populations 1.22576 0.86819 1.01892 1.01433 1.61555 1.08708 1.12860 1.41111 1.21858 1.00646 0.88864 0.97132 1.19741 0.85424 0.82905 0.88963 1.90494 1.43778 1.64611 1.47084 1.41874 1.49533 1.10779 1.18073 1.19749 1.32706 0.95405 0.94756 0.87863 1.25255 0.96890 0.96680 0.99214 1.69620 1.38261 1.12170 1.34388 0.85807 0.78201 0.78997 0.81388 1.19215 1.20776 1.20828 1.22077 1.00390 0.91766 0.92116 1.22396 1.00818 0.94235 0.93996 0.89205 1.22703 1.02707 0.93500 0.97697 1.22128 1.01579 0.98069 0.80073 1.48493 1.70108 1.07259 1.08673 1.16169 0.77748 0.81224 0.84852 1.90933 1.50300 1.82687 1.15350 1.22096 1.12623 0.95191 0.82331 1.22002 1.00630 0.90362 1.01425 1.21869 1.08890 1.00622 0.92901 1.24422 1.02852 0.80691 1.00389 1.84147 1.69125 1.23203 1.29157 1.22312 1.00581 0.77127 1.00031 0.92145 0.88578 0.96792 0.89412 0.93485 0.77536 0.91986 0.90474 0.94412 0.89798 0.90147 0.91045 0.91026 0.82187 0.82632 0.77422 0.90794 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 8.99 60.06 0.54 0.86 16 2 N -0.52 -8.28 4.45 -244.37 -1.09 -9.37 16 3 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 4 C 0.44 10.45 7.47 -10.99 -0.08 10.37 16 5 O -0.58 -15.53 13.91 5.55 0.08 -15.45 16 6 N -0.57 -14.36 5.29 -10.97 -0.06 -14.42 16 7 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 8 H 0.10 3.05 7.16 -52.48 -0.38 2.67 16 9 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 10 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 11 Si 0.93 21.28 29.55 -169.99 -5.02 16.25 16 12 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 15 C 0.07 0.75 4.42 -3.83 -0.02 0.73 16 16 C -0.09 -0.98 2.99 -88.47 -0.26 -1.24 16 17 H 0.09 0.98 6.30 -51.93 -0.33 0.65 16 18 C -0.13 -0.94 6.41 -24.90 -0.16 -1.10 16 19 C 0.10 0.88 5.56 -2.90 -0.02 0.86 16 20 N -0.61 -7.32 3.33 -171.82 -0.57 -7.90 16 21 C 0.61 8.49 7.82 -12.86 -0.10 8.39 16 22 O -0.52 -9.01 17.12 5.19 0.09 -8.92 16 23 C -0.07 -0.79 6.95 -36.80 -0.26 -1.05 16 24 C -0.12 -1.23 10.62 -39.39 -0.42 -1.65 16 25 C -0.22 -1.58 10.88 -39.89 -0.43 -2.01 16 26 C -0.01 -0.08 12.08 29.63 0.36 0.27 16 27 O -0.16 -1.43 8.28 5.00 0.04 -1.39 16 28 C 0.12 1.53 6.33 -2.53 -0.02 1.52 16 29 H 0.06 0.84 6.33 -51.93 -0.33 0.51 16 30 H 0.10 1.89 5.82 -51.93 -0.30 1.59 16 31 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 1.38 7.93 -51.93 -0.41 0.97 16 33 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 34 H 0.39 9.49 7.90 -40.82 -0.32 9.16 16 35 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 36 H 0.08 0.83 7.75 -51.92 -0.40 0.43 16 37 H 0.04 0.39 8.12 -51.93 -0.42 -0.03 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.08 0.53 8.04 -51.93 -0.42 0.11 16 40 H 0.07 0.56 7.66 -51.93 -0.40 0.17 16 41 H 0.07 0.55 7.81 -51.93 -0.41 0.14 16 42 H 0.16 1.53 8.06 -52.49 -0.42 1.10 16 43 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 44 H 0.21 0.36 8.06 -52.49 -0.42 -0.06 16 45 H 0.07 0.95 7.91 -51.93 -0.41 0.53 16 46 H 0.09 1.43 8.04 -51.93 -0.42 1.01 16 LS Contribution 381.09 15.07 5.74 5.74 Total: -1.00 -34.44 381.09 -7.81 -42.26 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.61 Total: 8.39 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -1.13 Total: 8.75 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.99 Total: -55.64 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: 0.21 Total: -25.76 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.44 -7.81 -42.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267625266.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.584 kcal (2) G-P(sol) polarization free energy of solvation -34.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds