Wall clock time and date at job start Tue Mar 31 2020 18:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46902 * 111.00029 * 2 1 4 4 C 1.50704 * 109.46699 * 66.05175 * 3 2 1 5 5 O 1.21291 * 120.00308 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99631 * 179.97438 * 4 3 2 7 7 C 1.37103 * 119.99753 * 180.02562 * 6 4 3 8 8 H 1.07997 * 119.99833 * 359.97438 * 7 6 4 9 9 C 1.38941 * 119.99637 * 180.02562 * 7 6 4 10 10 N 1.31413 * 120.00262 * 359.72318 * 9 7 6 11 11 Si 1.86806 * 119.99893 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47194 * 269.72231 * 11 9 7 13 13 H 1.48499 * 109.46734 * 29.72573 * 11 9 7 14 14 H 1.48506 * 109.47153 * 149.72309 * 11 9 7 15 15 C 1.46900 * 110.99310 * 236.04951 * 2 1 3 16 16 C 1.53003 * 109.46850 * 199.80666 * 15 2 1 17 17 H 1.09000 * 110.88973 * 301.28923 * 16 15 2 18 18 C 1.55160 * 111.00397 * 177.36366 * 16 15 2 19 19 C 1.54325 * 102.94385 * 206.42840 * 18 16 15 20 20 N 1.47022 * 107.26961 * 22.18966 * 19 18 16 21 21 C 1.34779 * 125.64800 * 181.09320 * 20 19 18 22 22 O 1.21691 * 119.99885 * 179.97438 * 21 20 19 23 23 C 1.46656 * 119.99900 * 359.96507 * 21 20 19 24 24 C 1.36542 * 125.98630 * 179.97438 * 23 21 20 25 25 C 1.40364 * 106.70823 * 179.97438 * 24 23 21 26 26 C 1.35131 * 107.11379 * 359.97438 * 25 24 23 27 27 O 1.33929 * 108.76701 * 359.77199 * 26 25 24 28 28 C 1.47426 * 108.70576 * 1.06580 * 20 19 18 29 29 H 1.08996 * 109.46979 * 54.60479 * 1 2 3 30 30 H 1.08999 * 109.47300 * 174.60988 * 1 2 3 31 31 H 1.09005 * 109.46760 * 294.60939 * 1 2 3 32 32 H 1.09000 * 109.47443 * 306.05082 * 3 2 1 33 33 H 1.09002 * 109.46636 * 186.04624 * 3 2 1 34 34 H 0.96998 * 119.99931 * 0.02562 * 6 4 3 35 35 H 0.97000 * 120.00262 * 0.27559 * 10 9 7 36 36 H 1.08999 * 109.47790 * 319.80735 * 15 2 1 37 37 H 1.09007 * 109.47350 * 79.81093 * 15 2 1 38 38 H 1.09004 * 110.72166 * 324.78704 * 18 16 15 39 39 H 1.08995 * 110.71871 * 88.06058 * 18 16 15 40 40 H 1.09001 * 109.88045 * 262.78068 * 19 18 16 41 41 H 1.08996 * 110.01169 * 141.68423 * 19 18 16 42 42 H 1.08000 * 126.64869 * 359.93233 * 24 23 21 43 43 H 1.08000 * 126.44880 * 180.02562 * 25 24 23 44 44 H 1.08002 * 125.61631 * 180.02562 * 26 25 24 45 45 H 1.08998 * 110.36620 * 217.02966 * 28 20 19 46 46 H 1.08991 * 110.36966 * 94.70441 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2986 5 8 1.0056 1.4451 2.1413 6 7 2.0190 3.3198 1.5239 7 6 1.6934 3.9342 2.7054 8 1 1.1305 3.3985 3.4554 9 6 2.0867 5.2464 2.9375 10 7 2.7755 5.8968 2.0267 11 14 1.6425 6.0839 4.5471 12 1 0.3334 6.7700 4.4032 13 1 1.5527 5.0672 5.6257 14 1 2.6883 7.0803 4.8918 15 6 1.9953 -0.7659 -1.1377 16 6 3.4451 -1.1658 -0.8563 17 1 4.0649 -0.2855 -0.6856 18 6 4.0162 -2.0342 -2.0084 19 6 5.1072 -2.8682 -1.3044 20 7 4.7789 -2.8960 0.1284 21 6 5.5015 -3.5069 1.0882 22 8 5.1331 -3.4642 2.2472 23 6 6.7317 -4.2232 0.7356 24 6 7.5540 -4.8814 1.6046 25 6 8.6025 -5.4174 0.8407 26 6 8.3768 -5.0678 -0.4450 27 8 7.2458 -4.3529 -0.5049 28 6 3.5286 -2.1445 0.3416 29 1 -0.3633 0.5952 -0.8377 30 1 -0.3634 -1.0231 -0.0965 31 1 -0.3633 0.4280 0.9344 32 1 1.5611 1.9274 -0.8308 33 1 3.0798 1.3443 -0.1083 34 1 2.5243 3.8010 0.8501 35 1 3.0060 5.4621 1.1907 36 1 1.3927 -1.6626 -1.2821 37 1 1.9558 -0.1527 -2.0380 38 1 3.2434 -2.6815 -2.4229 39 1 4.4520 -1.4060 -2.7851 40 1 6.0821 -2.4036 -1.4523 41 1 5.1160 -3.8829 -1.7025 42 1 7.4234 -4.9715 2.6729 43 1 9.4330 -6.0003 1.2106 44 1 9.0029 -5.3261 -1.2862 45 1 3.5734 -1.5922 1.2803 46 1 2.6741 -2.8210 0.3390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267625267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:58 Heat of formation + Delta-G solvation = -36.481917 kcal Electronic energy + Delta-G solvation = -28715.838578 eV Core-core repulsion = 24607.802870 eV Total energy + Delta-G solvation = -4108.035709 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.97154 -40.09399 -38.78984 -37.81679 -36.20638 -34.18560 -33.43766 -32.37507 -31.08050 -30.19158 -29.52007 -27.98762 -26.63788 -24.65565 -24.06521 -22.42731 -22.09784 -21.87091 -20.45982 -20.03190 -19.38160 -18.07875 -17.84947 -16.94470 -16.73987 -16.60469 -16.01066 -15.53266 -15.33606 -14.98206 -14.63436 -14.20752 -13.99016 -13.77428 -13.65074 -13.50094 -13.43651 -13.32048 -13.05050 -13.00710 -12.80873 -12.38622 -12.26794 -11.78149 -11.65021 -11.37689 -11.16657 -11.15253 -10.98391 -10.88367 -10.63262 -10.40467 -10.37433 -10.19075 -9.82601 -9.48077 -9.10526 -8.75145 -8.48730 -8.01492 -7.89457 -6.72030 -3.84851 0.80247 2.04897 2.35307 2.86918 3.00142 3.33255 3.38075 3.57259 3.84562 3.88900 4.19299 4.31848 4.34323 4.54200 4.59175 4.61040 4.73729 4.92136 4.98968 5.14458 5.25263 5.28025 5.33977 5.41004 5.43980 5.45990 5.51796 5.57521 5.58116 5.64079 5.69829 5.76035 5.83977 5.92763 5.99186 6.02334 6.05950 6.08700 6.18379 6.51816 6.55835 7.17804 7.24732 7.32255 7.85099 7.86819 8.12054 8.64041 8.84610 9.51486 9.92719 10.71631 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.002459 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.617573 B =11382.195274 C =12500.459418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.519 5.519 3 C 0.045 3.955 4 C 0.447 3.553 5 O -0.569 6.569 6 N -0.578 5.578 7 C -0.379 4.379 8 H 0.099 0.901 9 C -0.011 4.011 10 N -0.904 5.904 11 Si 1.093 2.907 12 H -0.285 1.285 13 H -0.283 1.283 14 H -0.281 1.281 15 C 0.065 3.935 16 C -0.096 4.096 17 H 0.087 0.913 18 C -0.127 4.127 19 C 0.104 3.896 20 N -0.612 5.612 21 C 0.612 3.388 22 O -0.514 6.514 23 C -0.070 4.070 24 C -0.124 4.124 25 C -0.224 4.224 26 C -0.014 4.014 27 O -0.161 6.161 28 C 0.124 3.876 29 H 0.015 0.985 30 H 0.059 0.941 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.086 0.914 34 H 0.374 0.626 35 H 0.261 0.739 36 H 0.077 0.923 37 H 0.040 0.960 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.161 0.839 43 H 0.156 0.844 44 H 0.209 0.791 45 H 0.092 0.908 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.301 -20.557 -13.710 26.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.242 5.242 3 C -0.087 4.087 4 C 0.233 3.767 5 O -0.452 6.452 6 N -0.216 5.216 7 C -0.509 4.509 8 H 0.117 0.883 9 C -0.213 4.213 10 N -0.543 5.543 11 Si 0.919 3.081 12 H -0.212 1.212 13 H -0.209 1.209 14 H -0.207 1.207 15 C -0.063 4.063 16 C -0.116 4.116 17 H 0.105 0.895 18 C -0.165 4.165 19 C -0.019 4.019 20 N -0.346 5.346 21 C 0.400 3.600 22 O -0.392 6.392 23 C -0.122 4.122 24 C -0.144 4.144 25 C -0.243 4.243 26 C -0.084 4.084 27 O -0.056 6.056 28 C 0.003 3.997 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.065 0.935 33 H 0.104 0.896 34 H 0.207 0.793 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.058 0.942 38 H 0.098 0.902 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.178 0.822 43 H 0.174 0.826 44 H 0.226 0.774 45 H 0.110 0.890 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.836 -19.640 -11.395 24.365 hybrid contribution 0.274 -0.922 -2.114 2.322 sum 9.110 -20.561 -13.509 26.235 Atomic orbital electron populations 1.22544 0.86361 1.00781 1.02692 1.61565 1.08735 1.12726 1.41206 1.21935 1.00640 0.89130 0.96976 1.19664 0.85444 0.82622 0.89012 1.90493 1.43426 1.64291 1.46990 1.41950 1.50238 1.11511 1.17935 1.20558 1.36428 0.98592 0.95279 0.88288 1.26487 0.95601 0.93653 1.05519 1.70873 1.36677 1.39210 1.07549 0.83103 0.76444 0.75565 0.72992 1.21168 1.20890 1.20668 1.22086 0.94099 0.98143 0.92009 1.22394 0.97045 0.97976 0.94154 0.89466 1.22698 0.97856 0.98272 0.97665 1.22071 0.99011 1.00696 0.80135 1.48422 1.25801 1.52667 1.07671 1.16167 0.80794 0.78565 0.84468 1.90934 1.69233 1.61059 1.17925 1.22092 0.99192 1.08236 0.82701 1.22004 0.93665 0.97508 1.01237 1.21867 1.02252 1.06883 0.93268 1.24420 0.87912 0.96352 0.99694 1.84146 1.33534 1.57450 1.30511 1.22251 0.84389 0.92954 1.00155 0.96635 0.92233 0.88516 0.93541 0.89585 0.79272 0.92799 0.90468 0.94170 0.90222 0.89726 0.91056 0.91090 0.82177 0.82624 0.77419 0.88985 0.90914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.19 60.07 0.55 0.93 16 2 N -0.52 -8.23 4.22 -244.36 -1.03 -9.26 16 3 C 0.04 0.78 5.27 -4.97 -0.03 0.75 16 4 C 0.45 10.59 7.54 -10.98 -0.08 10.51 16 5 O -0.57 -15.50 13.88 5.55 0.08 -15.42 16 6 N -0.58 -14.68 5.28 -10.96 -0.06 -14.74 16 7 C -0.38 -10.79 9.68 -14.93 -0.14 -10.94 16 8 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 9 C -0.01 -0.29 5.50 -17.47 -0.10 -0.39 16 10 N -0.90 -25.62 13.68 55.50 0.76 -24.86 16 11 Si 1.09 24.78 29.92 -169.99 -5.09 19.69 16 12 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 14 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 15 C 0.07 0.74 4.45 -3.82 -0.02 0.72 16 16 C -0.10 -1.04 3.06 -88.46 -0.27 -1.32 16 17 H 0.09 1.04 6.85 -51.93 -0.36 0.69 16 18 C -0.13 -0.97 6.42 -24.89 -0.16 -1.13 16 19 C 0.10 0.94 5.55 -3.06 -0.02 0.92 16 20 N -0.61 -7.79 3.33 -172.07 -0.57 -8.36 16 21 C 0.61 8.99 7.82 -12.86 -0.10 8.89 16 22 O -0.51 -9.45 17.12 5.20 0.09 -9.36 16 23 C -0.07 -0.84 6.95 -36.80 -0.26 -1.10 16 24 C -0.12 -1.32 10.62 -39.39 -0.42 -1.74 16 25 C -0.22 -1.72 10.87 -39.89 -0.43 -2.15 16 26 C -0.01 -0.09 12.08 29.63 0.36 0.26 16 27 O -0.16 -1.54 8.27 5.01 0.04 -1.49 16 28 C 0.12 1.66 6.18 -2.53 -0.02 1.64 16 29 H 0.02 0.22 8.07 -51.93 -0.42 -0.20 16 30 H 0.06 0.79 7.84 -51.93 -0.41 0.38 16 31 H 0.10 1.89 5.99 -51.93 -0.31 1.58 16 32 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 33 H 0.09 1.36 6.67 -51.93 -0.35 1.02 16 34 H 0.37 8.79 6.73 -40.82 -0.27 8.51 16 35 H 0.26 7.09 6.78 -40.82 -0.28 6.81 16 36 H 0.08 0.77 7.72 -51.93 -0.40 0.37 16 37 H 0.04 0.41 8.00 -51.93 -0.42 0.00 16 38 H 0.08 0.52 8.04 -51.93 -0.42 0.11 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.62 7.69 -51.93 -0.40 0.22 16 41 H 0.07 0.57 7.77 -51.93 -0.40 0.17 16 42 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 43 H 0.16 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.21 0.48 8.06 -52.49 -0.42 0.06 16 45 H 0.09 1.56 8.04 -51.93 -0.42 1.14 16 46 H 0.07 0.95 8.02 -51.93 -0.42 0.53 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -36.00 379.97 -7.73 -43.73 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -6.54 Total: 8.48 kcal Atomic # 6 Polarization: 7.00 SS G_CDS: -1.13 Total: 5.87 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.90 Total: -57.22 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: 0.21 Total: -26.28 kcal Atomic # 14 Polarization: 24.78 SS G_CDS: -5.09 Total: 19.69 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.00 -7.73 -43.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267625267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.247 kcal (2) G-P(sol) polarization free energy of solvation -36.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds