Wall clock time and date at job start Tue Mar 31 2020 18:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46902 * 111.00029 * 2 1 4 4 C 1.50704 * 109.46699 * 66.05175 * 3 2 1 5 5 O 1.21291 * 120.00308 * 0.02562 * 4 3 2 6 6 N 1.34778 * 119.99631 * 179.97438 * 4 3 2 7 7 C 1.37103 * 119.99753 * 180.02562 * 6 4 3 8 8 H 1.07997 * 119.99833 * 359.97438 * 7 6 4 9 9 C 1.38941 * 119.99637 * 180.02562 * 7 6 4 10 10 N 1.31413 * 120.00262 * 359.72318 * 9 7 6 11 11 Si 1.86806 * 119.99893 * 179.97438 * 9 7 6 12 12 H 1.48492 * 109.47194 * 269.72231 * 11 9 7 13 13 H 1.48499 * 109.46734 * 29.72573 * 11 9 7 14 14 H 1.48506 * 109.47153 * 149.72309 * 11 9 7 15 15 C 1.46900 * 110.99310 * 236.04951 * 2 1 3 16 16 C 1.53003 * 109.46850 * 199.80666 * 15 2 1 17 17 H 1.09000 * 110.88973 * 301.28923 * 16 15 2 18 18 C 1.55160 * 111.00397 * 177.36366 * 16 15 2 19 19 C 1.54325 * 102.94385 * 206.42840 * 18 16 15 20 20 N 1.47022 * 107.26961 * 22.18966 * 19 18 16 21 21 C 1.34779 * 125.64800 * 181.09320 * 20 19 18 22 22 O 1.21691 * 119.99885 * 179.97438 * 21 20 19 23 23 C 1.46656 * 119.99900 * 359.96507 * 21 20 19 24 24 C 1.36542 * 125.98630 * 179.97438 * 23 21 20 25 25 C 1.40364 * 106.70823 * 179.97438 * 24 23 21 26 26 C 1.35131 * 107.11379 * 359.97438 * 25 24 23 27 27 O 1.33929 * 108.76701 * 359.77199 * 26 25 24 28 28 C 1.47426 * 108.70576 * 1.06580 * 20 19 18 29 29 H 1.08996 * 109.46979 * 54.60479 * 1 2 3 30 30 H 1.08999 * 109.47300 * 174.60988 * 1 2 3 31 31 H 1.09005 * 109.46760 * 294.60939 * 1 2 3 32 32 H 1.09000 * 109.47443 * 306.05082 * 3 2 1 33 33 H 1.09002 * 109.46636 * 186.04624 * 3 2 1 34 34 H 0.96998 * 119.99931 * 0.02562 * 6 4 3 35 35 H 0.97000 * 120.00262 * 0.27559 * 10 9 7 36 36 H 1.08999 * 109.47790 * 319.80735 * 15 2 1 37 37 H 1.09007 * 109.47350 * 79.81093 * 15 2 1 38 38 H 1.09004 * 110.72166 * 324.78704 * 18 16 15 39 39 H 1.08995 * 110.71871 * 88.06058 * 18 16 15 40 40 H 1.09001 * 109.88045 * 262.78068 * 19 18 16 41 41 H 1.08996 * 110.01169 * 141.68423 * 19 18 16 42 42 H 1.08000 * 126.64869 * 359.93233 * 24 23 21 43 43 H 1.08000 * 126.44880 * 180.02562 * 25 24 23 44 44 H 1.08002 * 125.61631 * 180.02562 * 26 25 24 45 45 H 1.08998 * 110.36620 * 217.02966 * 28 20 19 46 46 H 1.08991 * 110.36966 * 94.70441 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 1.2986 5 8 1.0056 1.4451 2.1413 6 7 2.0190 3.3198 1.5239 7 6 1.6934 3.9342 2.7054 8 1 1.1305 3.3985 3.4554 9 6 2.0867 5.2464 2.9375 10 7 2.7755 5.8968 2.0267 11 14 1.6425 6.0839 4.5471 12 1 0.3334 6.7700 4.4032 13 1 1.5527 5.0672 5.6257 14 1 2.6883 7.0803 4.8918 15 6 1.9953 -0.7659 -1.1377 16 6 3.4451 -1.1658 -0.8563 17 1 4.0649 -0.2855 -0.6856 18 6 4.0162 -2.0342 -2.0084 19 6 5.1072 -2.8682 -1.3044 20 7 4.7789 -2.8960 0.1284 21 6 5.5015 -3.5069 1.0882 22 8 5.1331 -3.4642 2.2472 23 6 6.7317 -4.2232 0.7356 24 6 7.5540 -4.8814 1.6046 25 6 8.6025 -5.4174 0.8407 26 6 8.3768 -5.0678 -0.4450 27 8 7.2458 -4.3529 -0.5049 28 6 3.5286 -2.1445 0.3416 29 1 -0.3633 0.5952 -0.8377 30 1 -0.3634 -1.0231 -0.0965 31 1 -0.3633 0.4280 0.9344 32 1 1.5611 1.9274 -0.8308 33 1 3.0798 1.3443 -0.1083 34 1 2.5243 3.8010 0.8501 35 1 3.0060 5.4621 1.1907 36 1 1.3927 -1.6626 -1.2821 37 1 1.9558 -0.1527 -2.0380 38 1 3.2434 -2.6815 -2.4229 39 1 4.4520 -1.4060 -2.7851 40 1 6.0821 -2.4036 -1.4523 41 1 5.1160 -3.8829 -1.7025 42 1 7.4234 -4.9715 2.6729 43 1 9.4330 -6.0003 1.2106 44 1 9.0029 -5.3261 -1.2862 45 1 3.5734 -1.5922 1.2803 46 1 2.6741 -2.8210 0.3390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267625267.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:37:57 Heat of formation + Delta-G solvation = -63.596867 kcal Electronic energy + Delta-G solvation = -28717.014371 eV Core-core repulsion = 24607.802870 eV Total energy + Delta-G solvation = -4109.211501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.67659 -41.10944 -40.46505 -39.04815 -37.53554 -36.21603 -34.14643 -33.39830 -33.14605 -30.95110 -30.39576 -29.49828 -27.67664 -26.45405 -25.24532 -23.40950 -22.95164 -22.68956 -21.69050 -20.96583 -20.81785 -19.93948 -18.93921 -18.32116 -17.64026 -17.58706 -17.04501 -16.94929 -16.49450 -16.37559 -15.95069 -15.66121 -15.39032 -15.28075 -15.09602 -14.58218 -14.27643 -14.14102 -13.96601 -13.87596 -13.77472 -13.63913 -13.36725 -13.31333 -13.05242 -12.73439 -12.67879 -12.45843 -12.12368 -11.96544 -11.90939 -11.87476 -11.57379 -11.51927 -11.45269 -11.08450 -10.33724 -10.09471 -9.99297 -9.59130 -9.19714 -8.93319 -6.06477 -0.02326 1.39627 1.50239 1.52572 1.53296 1.80219 2.01069 2.01785 2.05168 2.38286 2.70227 3.15719 3.21882 3.43606 3.58748 3.73220 3.82082 3.92182 4.06843 4.09445 4.22925 4.28471 4.30175 4.41189 4.43546 4.50983 4.56158 4.62934 4.66852 4.72059 4.78062 4.84969 4.88266 4.91406 4.96017 5.08994 5.16420 5.19358 5.32714 5.39063 5.59362 5.84768 5.93151 5.98933 6.20246 6.29353 6.58773 6.76576 6.82064 7.45027 7.95560 8.54857 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013532 B = 0.002459 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.617573 B =11382.195274 C =12500.459418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.544 5.544 3 C 0.059 3.941 4 C 0.443 3.557 5 O -0.609 6.609 6 N -0.590 5.590 7 C -0.407 4.407 8 H 0.070 0.930 9 C -0.043 4.043 10 N -0.918 5.918 11 Si 1.134 2.866 12 H -0.268 1.268 13 H -0.281 1.281 14 H -0.272 1.272 15 C 0.070 3.930 16 C -0.091 4.091 17 H 0.075 0.925 18 C -0.110 4.110 19 C 0.100 3.900 20 N -0.613 5.613 21 C 0.601 3.399 22 O -0.574 6.574 23 C -0.104 4.104 24 C -0.131 4.131 25 C -0.234 4.234 26 C 0.014 3.986 27 O -0.161 6.161 28 C 0.123 3.877 29 H 0.032 0.968 30 H 0.084 0.916 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.105 0.895 34 H 0.384 0.616 35 H 0.259 0.741 36 H 0.097 0.903 37 H 0.067 0.933 38 H 0.100 0.900 39 H 0.111 0.889 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.151 0.849 43 H 0.184 0.816 44 H 0.260 0.740 45 H 0.042 0.958 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.835 -21.726 -17.414 29.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.268 5.268 3 C -0.072 4.072 4 C 0.231 3.769 5 O -0.494 6.494 6 N -0.230 5.230 7 C -0.536 4.536 8 H 0.088 0.912 9 C -0.241 4.241 10 N -0.558 5.558 11 Si 0.954 3.046 12 H -0.193 1.193 13 H -0.207 1.207 14 H -0.197 1.197 15 C -0.058 4.058 16 C -0.110 4.110 17 H 0.093 0.907 18 C -0.148 4.148 19 C -0.022 4.022 20 N -0.344 5.344 21 C 0.391 3.609 22 O -0.456 6.456 23 C -0.156 4.156 24 C -0.152 4.152 25 C -0.253 4.253 26 C -0.055 4.055 27 O -0.057 6.057 28 C 0.001 3.999 29 H 0.050 0.950 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.218 0.782 35 H 0.070 0.930 36 H 0.115 0.885 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.130 0.870 40 H 0.095 0.905 41 H 0.105 0.895 42 H 0.169 0.831 43 H 0.201 0.799 44 H 0.276 0.724 45 H 0.060 0.940 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.378 -20.815 -15.187 27.778 hybrid contribution -0.125 -0.720 -1.016 1.252 sum 10.254 -21.535 -16.203 28.835 Atomic orbital electron populations 1.22401 0.86484 1.02217 1.00749 1.61475 1.08908 1.11984 1.44472 1.21781 1.01921 0.89977 0.93492 1.20913 0.83410 0.81863 0.90715 1.90478 1.44735 1.65101 1.49123 1.42012 1.51063 1.12409 1.17529 1.20501 1.37501 0.99321 0.96308 0.91216 1.27777 0.94695 0.93843 1.07790 1.70938 1.37416 1.39463 1.07958 0.82617 0.77206 0.75040 0.69748 1.19331 1.20657 1.19656 1.22187 0.94028 0.98523 0.91032 1.22346 0.97095 0.97279 0.94317 0.90656 1.22715 0.97677 0.97838 0.96537 1.22345 0.99942 1.02133 0.77761 1.48568 1.25139 1.51517 1.09201 1.16625 0.81660 0.78486 0.84087 1.90877 1.71041 1.63501 1.20214 1.21566 0.99363 1.10512 0.84165 1.22250 0.94534 0.97160 1.01210 1.22205 1.02264 1.07442 0.93385 1.25470 0.86239 0.92998 1.00839 1.84129 1.34534 1.57971 1.29037 1.22162 0.85034 0.93369 0.99378 0.94999 0.89764 0.93283 0.90954 0.87750 0.78226 0.92967 0.88488 0.91469 0.88116 0.87022 0.90470 0.89477 0.83131 0.79915 0.72384 0.93972 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 9.19 127.69 1.17 2.07 16 2 N -0.54 -16.77 4.22 -927.00 -3.91 -20.69 16 3 C 0.06 2.02 5.27 85.56 0.45 2.48 16 4 C 0.44 21.64 7.54 87.66 0.66 22.30 16 5 O -0.61 -34.94 13.88 -3.06 -0.04 -34.99 16 6 N -0.59 -30.89 5.28 -306.98 -1.62 -32.52 16 7 C -0.41 -24.02 9.68 84.04 0.81 -23.20 16 8 H 0.07 4.45 7.16 -2.91 -0.02 4.43 16 9 C -0.04 -2.41 5.50 84.92 0.47 -1.94 16 10 N -0.92 -52.30 13.68 21.66 0.30 -52.00 16 11 Si 1.13 50.31 29.92 68.60 2.05 52.37 16 12 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 13 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 14 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 15 C 0.07 1.37 4.45 86.30 0.38 1.75 16 16 C -0.09 -1.80 3.06 -9.40 -0.03 -1.83 16 17 H 0.08 1.69 6.85 -2.39 -0.02 1.67 16 18 C -0.11 -1.25 6.42 31.78 0.20 -1.04 16 19 C 0.10 1.56 5.55 86.73 0.48 2.04 16 20 N -0.61 -15.85 3.33 -816.52 -2.72 -18.57 16 21 C 0.60 18.83 7.82 86.44 0.68 19.50 16 22 O -0.57 -23.31 17.12 -4.32 -0.07 -23.38 16 23 C -0.10 -2.54 6.95 24.07 0.17 -2.37 16 24 C -0.13 -2.82 10.62 22.39 0.24 -2.58 16 25 C -0.23 -3.03 10.87 22.07 0.24 -2.79 16 26 C 0.01 0.13 12.08 67.10 0.81 0.94 16 27 O -0.16 -2.71 8.27 -5.00 -0.04 -2.75 16 28 C 0.12 3.40 6.18 86.86 0.54 3.93 16 29 H 0.03 0.85 8.07 -2.39 -0.02 0.84 16 30 H 0.08 2.11 7.84 -2.39 -0.02 2.09 16 31 H 0.05 1.98 5.99 -2.38 -0.01 1.97 16 32 H 0.07 2.12 8.07 -2.39 -0.02 2.10 16 33 H 0.10 3.19 6.67 -2.39 -0.02 3.17 16 34 H 0.38 18.34 6.73 -92.71 -0.62 17.71 16 35 H 0.26 14.25 6.78 -92.71 -0.63 13.62 16 36 H 0.10 1.57 7.72 -2.39 -0.02 1.56 16 37 H 0.07 1.04 8.00 -2.38 -0.02 1.02 16 38 H 0.10 0.80 8.04 -2.39 -0.02 0.78 16 39 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 1.14 7.69 -2.39 -0.02 1.12 16 41 H 0.09 1.12 7.77 -2.39 -0.02 1.10 16 42 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 43 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 44 H 0.26 -0.40 8.06 -2.91 -0.02 -0.42 16 45 H 0.04 1.57 8.04 -2.39 -0.02 1.55 16 46 H 0.07 1.96 8.02 -2.39 -0.02 1.95 16 Total: -1.00 -86.19 379.97 1.74 -84.45 By element: Atomic # 1 Polarization: 28.29 SS G_CDS: 0.52 Total: 28.81 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 7.27 Total: 19.26 kcal Atomic # 7 Polarization: -115.82 SS G_CDS: -7.95 Total: -123.77 kcal Atomic # 8 Polarization: -60.96 SS G_CDS: -0.16 Total: -61.12 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 2.05 Total: 52.37 kcal Total: -86.19 1.74 -84.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267625267.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.853 kcal (2) G-P(sol) polarization free energy of solvation -86.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds