Wall clock time and date at job start Tue Mar 31 2020 18:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00270 * 2 1 4 4 C 1.34776 * 119.99731 * 179.97438 * 2 1 3 5 5 O 1.21349 * 120.00332 * 0.39716 * 4 2 1 6 6 C 1.49452 * 119.99833 * 180.12778 * 4 2 1 7 7 O 1.21354 * 120.00055 * 355.69335 * 6 4 2 8 8 N 1.34773 * 119.99901 * 175.69335 * 6 4 2 9 9 C 1.48089 * 126.95081 * 4.51363 * 8 6 4 10 10 C 1.55125 * 103.18066 * 219.43838 * 9 8 6 11 11 C 1.54705 * 102.53145 * 321.99541 * 10 9 8 12 12 H 1.08995 * 117.82930 * 163.10032 * 11 10 9 13 13 C 1.53128 * 118.02486 * 319.70395 * 11 10 9 14 14 C 1.47388 * 126.94256 * 184.82971 * 8 6 4 15 15 C 1.50699 * 117.18494 * 15.70532 * 14 8 6 16 16 O 1.21280 * 120.00132 * 227.90591 * 15 14 8 17 17 N 1.34781 * 119.99705 * 47.90370 * 15 14 8 18 18 C 1.47065 * 136.05559 * 5.32112 * 17 15 14 19 19 C 1.53249 * 88.07974 * 207.20474 * 18 17 15 20 20 C 1.50696 * 114.50323 * 220.45745 * 19 18 17 21 21 H 1.08006 * 120.00051 * 99.07727 * 20 19 18 22 22 C 1.37870 * 120.00222 * 279.07587 * 20 19 18 23 23 N 1.31516 * 120.00183 * 185.26564 * 22 20 19 24 24 Si 1.86795 * 120.00008 * 5.25852 * 22 20 19 25 25 H 1.48500 * 109.47269 * 94.85642 * 24 22 20 26 26 H 1.48506 * 109.47225 * 214.85327 * 24 22 20 27 27 H 1.48497 * 109.47423 * 334.85866 * 24 22 20 28 28 C 1.47060 * 136.05596 * 185.69576 * 17 15 14 29 29 H 1.09005 * 109.47271 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47153 * 300.00404 * 1 2 3 31 31 H 1.09002 * 109.46958 * 60.00194 * 1 2 3 32 32 H 1.09000 * 109.47036 * 263.48245 * 3 2 1 33 33 H 1.09000 * 109.46931 * 23.47612 * 3 2 1 34 34 H 1.08994 * 109.47126 * 143.48049 * 3 2 1 35 35 H 1.09007 * 110.65989 * 337.49738 * 9 8 6 36 36 H 1.09002 * 110.66445 * 100.60825 * 9 8 6 37 37 H 1.09007 * 110.33426 * 203.98439 * 10 9 8 38 38 H 1.09001 * 111.35730 * 80.47640 * 10 9 8 39 39 H 1.09003 * 117.45026 * 344.10050 * 13 11 10 40 40 H 1.08994 * 117.45286 * 199.33358 * 13 11 10 41 41 H 1.08996 * 113.47161 * 321.93224 * 18 17 15 42 42 H 1.09001 * 113.46894 * 92.37813 * 18 17 15 43 43 H 1.08993 * 114.01508 * 87.71732 * 19 18 17 44 44 H 0.97000 * 120.00320 * 180.02562 * 23 22 20 45 45 H 1.09003 * 113.46881 * 267.62241 * 28 17 15 46 46 H 1.09001 * 113.47225 * 37.99696 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5321 -2.2181 -0.0063 6 6 3.6333 -1.1673 0.0034 7 8 4.2403 -0.1192 -0.0736 8 7 4.3070 -2.3312 0.0916 9 6 3.7303 -3.6952 0.0989 10 6 4.5966 -4.4399 1.1483 11 6 6.0084 -3.8634 0.8881 12 1 6.7641 -3.9995 1.6617 13 6 6.4378 -3.6398 -0.5646 14 6 5.7662 -2.5036 0.2067 15 6 6.5744 -1.2915 0.5923 16 8 7.5706 -1.0020 -0.0358 17 7 6.1900 -0.5293 1.6353 18 6 5.1437 -0.5957 2.6667 19 6 5.1906 0.9343 2.7395 20 6 5.0933 1.4969 4.1342 21 1 5.9876 1.8035 4.6564 22 6 3.8627 1.6203 4.7435 23 7 3.7657 2.2057 5.9172 24 14 2.3330 0.9561 3.9019 25 1 2.0496 -0.4141 4.3994 26 1 1.1787 1.8406 4.2031 27 1 2.5544 0.9138 2.4341 28 6 6.6282 0.7382 2.2388 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.4802 1.5250 -1.0210 33 1 1.5629 2.0547 0.4094 34 1 3.0944 1.1704 0.6115 35 1 2.6877 -3.6703 0.4163 36 1 3.8232 -4.1573 -0.8839 37 1 4.5774 -5.5137 0.9621 38 1 4.2691 -4.2167 2.1638 39 1 5.8546 -4.1327 -1.3425 40 1 7.5054 -3.5490 -0.7647 41 1 4.1939 -0.9823 2.2972 42 1 5.4697 -1.0843 3.5849 43 1 4.5333 1.4326 2.0271 44 1 2.9000 2.2921 6.3460 45 1 7.3537 0.6086 3.0420 46 1 6.9392 1.4831 1.5064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269036361.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:46 Heat of formation + Delta-G solvation = 19.258706 kcal Electronic energy + Delta-G solvation = -32065.967197 eV Core-core repulsion = 27960.348583 eV Total energy + Delta-G solvation = -4105.618614 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.43272 -40.01704 -38.97193 -38.01179 -36.98681 -35.81013 -32.93951 -32.64757 -30.63999 -29.49009 -28.46494 -26.97811 -25.82639 -25.13192 -24.52455 -24.03079 -22.07087 -20.82449 -19.95572 -19.53684 -18.12320 -17.41233 -17.13115 -17.00537 -16.56670 -16.44673 -15.67402 -15.40185 -15.08332 -14.95372 -14.40212 -14.21928 -14.07959 -13.84421 -13.56051 -13.30546 -13.07054 -12.93520 -12.68031 -12.58020 -12.52027 -12.40201 -12.17205 -12.01516 -11.75653 -11.66866 -11.48462 -10.97159 -10.86908 -10.80279 -10.70394 -10.49599 -9.96479 -9.75247 -9.37079 -9.25910 -9.18635 -8.89783 -8.68856 -8.56505 -7.96472 -6.22317 -4.24161 1.39898 1.99878 2.76846 3.14742 3.16643 3.23164 3.25231 3.28156 3.34882 3.72276 4.07573 4.27979 4.30826 4.42476 4.71005 4.74172 4.90639 5.02364 5.10035 5.18820 5.24404 5.26653 5.43593 5.51912 5.59607 5.63333 5.67469 5.70639 5.74447 5.88127 5.91005 5.94811 6.02137 6.11205 6.14907 6.21892 6.31176 6.33869 6.43432 6.54838 6.91632 7.20798 7.28063 7.55579 7.59590 7.95916 8.32367 8.38675 8.63876 8.81799 9.38787 10.89455 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010037 B = 0.007045 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.894182 B = 3973.376847 C = 5490.279164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.584 5.584 3 C 0.062 3.938 4 C 0.514 3.486 5 O -0.527 6.527 6 C 0.518 3.482 7 O -0.479 6.479 8 N -0.561 5.561 9 C 0.081 3.919 10 C -0.106 4.106 11 C -0.155 4.155 12 H 0.127 0.873 13 C -0.119 4.119 14 C 0.061 3.939 15 C 0.587 3.413 16 O -0.553 6.553 17 N -0.619 5.619 18 C 0.092 3.908 19 C -0.002 4.002 20 C -0.511 4.511 21 H 0.080 0.920 22 C 0.078 3.922 23 N -0.892 5.892 24 Si 0.862 3.138 25 H -0.281 1.281 26 H -0.288 1.288 27 H -0.247 1.247 28 C 0.119 3.881 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.116 0.884 35 H 0.122 0.878 36 H 0.078 0.922 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.121 0.879 41 H 0.041 0.959 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.265 0.735 45 H 0.078 0.922 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.723 -11.245 -11.604 16.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.317 5.317 3 C -0.080 4.080 4 C 0.297 3.703 5 O -0.405 6.405 6 C 0.302 3.698 7 O -0.351 6.351 8 N -0.296 5.296 9 C -0.041 4.041 10 C -0.144 4.144 11 C -0.174 4.174 12 H 0.145 0.855 13 C -0.158 4.158 14 C -0.028 4.028 15 C 0.374 3.626 16 O -0.432 6.432 17 N -0.351 5.351 18 C -0.031 4.031 19 C -0.021 4.021 20 C -0.549 4.549 21 H 0.098 0.902 22 C -0.125 4.125 23 N -0.529 5.529 24 Si 0.689 3.311 25 H -0.207 1.207 26 H -0.214 1.214 27 H -0.171 1.171 28 C -0.002 4.002 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.123 0.877 40 H 0.139 0.861 41 H 0.060 0.940 42 H 0.099 0.901 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.096 0.904 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.356 -10.951 -12.005 16.824 hybrid contribution -1.046 -0.359 -0.215 1.127 sum -5.402 -11.310 -12.220 17.505 Atomic orbital electron populations 1.21860 0.78160 1.04505 1.02086 1.47533 1.07455 1.06686 1.69977 1.22590 0.98905 0.83111 1.03389 1.19945 0.88138 0.84271 0.77936 1.90594 1.69640 1.30297 1.49943 1.19709 0.88178 0.83131 0.78797 1.90820 1.69137 1.29257 1.45929 1.47899 1.04452 1.06335 1.70932 1.23215 1.01219 0.80023 0.99633 1.22417 0.91680 1.00192 1.00101 1.23868 0.99455 0.96878 0.97239 0.85512 1.23338 1.02116 0.96396 0.93956 1.21562 0.81818 0.91133 1.08325 1.18152 0.83420 0.81211 0.79799 1.90650 1.27103 1.70978 1.54438 1.49498 1.34579 1.24287 1.26708 1.23728 0.88845 1.02126 0.88431 1.20800 0.92725 0.90475 0.98117 1.20799 0.95002 1.41991 0.97071 0.90228 1.24957 0.98746 0.94066 0.94710 1.69904 1.25122 1.42017 1.15888 0.87123 0.83133 0.79094 0.81758 1.20662 1.21375 1.17126 1.23063 0.99573 0.82820 0.94769 0.89221 0.91446 0.91448 0.92067 0.91230 0.86640 0.85992 0.90396 0.89191 0.89485 0.87711 0.86121 0.94019 0.90085 0.91389 0.92498 0.90384 0.91939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.85 10.65 59.85 0.64 1.49 16 2 N -0.58 -8.58 3.27 -190.03 -0.62 -9.20 16 3 C 0.06 0.90 8.37 59.85 0.50 1.40 16 4 C 0.51 8.36 7.72 -11.58 -0.09 8.27 16 5 O -0.53 -8.54 13.00 5.50 0.07 -8.47 16 6 C 0.52 9.02 5.57 -11.59 -0.06 8.96 16 7 O -0.48 -9.28 9.89 5.49 0.05 -9.23 16 8 N -0.56 -8.75 3.02 -156.89 -0.47 -9.22 16 9 C 0.08 0.96 6.22 -2.04 -0.01 0.95 16 10 C -0.11 -1.08 7.04 -24.71 -0.17 -1.26 16 11 C -0.15 -1.85 7.04 -89.13 -0.63 -2.48 16 12 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 13 C -0.12 -1.44 9.45 -26.73 -0.25 -1.69 16 14 C 0.06 0.96 3.09 -132.03 -0.41 0.56 16 15 C 0.59 11.69 6.37 -10.98 -0.07 11.62 16 16 O -0.55 -12.44 17.50 5.56 0.10 -12.34 16 17 N -0.62 -12.56 2.58 -185.39 -0.48 -13.04 16 18 C 0.09 1.87 6.04 -8.64 -0.05 1.82 16 19 C 0.00 -0.04 2.74 -91.39 -0.25 -0.29 16 20 C -0.51 -13.20 9.39 -34.44 -0.32 -13.52 16 21 H 0.08 2.24 8.06 -52.48 -0.42 1.81 16 22 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 23 N -0.89 -25.67 13.96 55.43 0.77 -24.90 16 24 Si 0.86 19.50 26.70 -169.99 -4.54 14.96 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 27 H -0.25 -5.08 3.78 56.52 0.21 -4.87 16 28 C 0.12 2.48 8.19 -8.51 -0.07 2.41 16 29 H 0.09 1.02 6.90 -51.93 -0.36 0.66 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.89 8.02 -51.93 -0.42 0.47 16 34 H 0.12 2.07 3.00 -51.93 -0.16 1.91 16 35 H 0.12 1.57 5.33 -51.92 -0.28 1.30 16 36 H 0.08 0.79 7.30 -51.93 -0.38 0.41 16 37 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.10 1.04 7.16 -51.93 -0.37 0.67 16 40 H 0.12 1.46 8.03 -51.93 -0.42 1.04 16 41 H 0.04 0.85 5.42 -51.93 -0.28 0.57 16 42 H 0.08 1.65 8.10 -51.93 -0.42 1.23 16 43 H 0.07 1.54 5.37 -51.93 -0.28 1.26 16 44 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.08 1.57 8.10 -51.93 -0.42 1.15 16 46 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 357.35 15.07 5.39 5.39 Total: -1.00 -32.54 357.35 -7.56 -40.11 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: -6.48 Total: 5.71 kcal Atomic # 6 Polarization: 21.58 SS G_CDS: -1.35 Total: 20.23 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.80 Total: -56.36 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: 0.22 Total: -30.03 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -4.54 Total: 14.96 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.54 -7.56 -40.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269036361.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.365 kcal (2) G-P(sol) polarization free energy of solvation -32.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds