Wall clock time and date at job start Tue Mar 31 2020 18:45:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46500 * 120.00270 * 2 1 4 4 C 1.34776 * 119.99731 * 179.97438 * 2 1 3 5 5 O 1.21349 * 120.00332 * 0.39716 * 4 2 1 6 6 C 1.49452 * 119.99833 * 180.12778 * 4 2 1 7 7 O 1.21354 * 120.00055 * 355.69335 * 6 4 2 8 8 N 1.34773 * 119.99901 * 175.69335 * 6 4 2 9 9 C 1.48089 * 126.95081 * 4.51363 * 8 6 4 10 10 C 1.55125 * 103.18066 * 219.43838 * 9 8 6 11 11 C 1.54705 * 102.53145 * 321.99541 * 10 9 8 12 12 H 1.08995 * 117.82930 * 163.10032 * 11 10 9 13 13 C 1.53128 * 118.02486 * 319.70395 * 11 10 9 14 14 C 1.47388 * 126.94256 * 184.82971 * 8 6 4 15 15 C 1.50699 * 117.18494 * 15.70532 * 14 8 6 16 16 O 1.21280 * 120.00132 * 227.90591 * 15 14 8 17 17 N 1.34781 * 119.99705 * 47.90370 * 15 14 8 18 18 C 1.47065 * 136.05559 * 5.32112 * 17 15 14 19 19 C 1.53249 * 88.07974 * 207.20474 * 18 17 15 20 20 C 1.50696 * 114.50323 * 220.45745 * 19 18 17 21 21 H 1.08006 * 120.00051 * 99.07727 * 20 19 18 22 22 C 1.37870 * 120.00222 * 279.07587 * 20 19 18 23 23 N 1.31516 * 120.00183 * 185.26564 * 22 20 19 24 24 Si 1.86795 * 120.00008 * 5.25852 * 22 20 19 25 25 H 1.48500 * 109.47269 * 94.85642 * 24 22 20 26 26 H 1.48506 * 109.47225 * 214.85327 * 24 22 20 27 27 H 1.48497 * 109.47423 * 334.85866 * 24 22 20 28 28 C 1.47060 * 136.05596 * 185.69576 * 17 15 14 29 29 H 1.09005 * 109.47271 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47153 * 300.00404 * 1 2 3 31 31 H 1.09002 * 109.46958 * 60.00194 * 1 2 3 32 32 H 1.09000 * 109.47036 * 263.48245 * 3 2 1 33 33 H 1.09000 * 109.46931 * 23.47612 * 3 2 1 34 34 H 1.08994 * 109.47126 * 143.48049 * 3 2 1 35 35 H 1.09007 * 110.65989 * 337.49738 * 9 8 6 36 36 H 1.09002 * 110.66445 * 100.60825 * 9 8 6 37 37 H 1.09007 * 110.33426 * 203.98439 * 10 9 8 38 38 H 1.09001 * 111.35730 * 80.47640 * 10 9 8 39 39 H 1.09003 * 117.45026 * 344.10050 * 13 11 10 40 40 H 1.08994 * 117.45286 * 199.33358 * 13 11 10 41 41 H 1.08996 * 113.47161 * 321.93224 * 18 17 15 42 42 H 1.09001 * 113.46894 * 92.37813 * 18 17 15 43 43 H 1.08993 * 114.01508 * 87.71732 * 19 18 17 44 44 H 0.97000 * 120.00320 * 180.02562 * 23 22 20 45 45 H 1.09003 * 113.46881 * 267.62241 * 28 17 15 46 46 H 1.09001 * 113.47225 * 37.99696 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1388 -1.1672 0.0005 5 8 1.5321 -2.2181 -0.0063 6 6 3.6333 -1.1673 0.0034 7 8 4.2403 -0.1192 -0.0736 8 7 4.3070 -2.3312 0.0916 9 6 3.7303 -3.6952 0.0989 10 6 4.5966 -4.4399 1.1483 11 6 6.0084 -3.8634 0.8881 12 1 6.7641 -3.9995 1.6617 13 6 6.4378 -3.6398 -0.5646 14 6 5.7662 -2.5036 0.2067 15 6 6.5744 -1.2915 0.5923 16 8 7.5706 -1.0020 -0.0358 17 7 6.1900 -0.5293 1.6353 18 6 5.1437 -0.5957 2.6667 19 6 5.1906 0.9343 2.7395 20 6 5.0933 1.4969 4.1342 21 1 5.9876 1.8035 4.6564 22 6 3.8627 1.6203 4.7435 23 7 3.7657 2.2057 5.9172 24 14 2.3330 0.9561 3.9019 25 1 2.0496 -0.4141 4.3994 26 1 1.1787 1.8406 4.2031 27 1 2.5544 0.9138 2.4341 28 6 6.6282 0.7382 2.2388 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.4802 1.5250 -1.0210 33 1 1.5629 2.0547 0.4094 34 1 3.0944 1.1704 0.6115 35 1 2.6877 -3.6703 0.4163 36 1 3.8232 -4.1573 -0.8839 37 1 4.5774 -5.5137 0.9621 38 1 4.2691 -4.2167 2.1638 39 1 5.8546 -4.1327 -1.3425 40 1 7.5054 -3.5490 -0.7647 41 1 4.1939 -0.9823 2.2972 42 1 5.4697 -1.0843 3.5849 43 1 4.5333 1.4326 2.0271 44 1 2.9000 2.2921 6.3460 45 1 7.3537 0.6086 3.0420 46 1 6.9392 1.4831 1.5064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269036361.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:45 Heat of formation + Delta-G solvation = -3.088671 kcal Electronic energy + Delta-G solvation = -32066.936252 eV Core-core repulsion = 27960.348583 eV Total energy + Delta-G solvation = -4106.587669 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.62089 -41.26120 -40.43597 -39.26584 -38.56676 -36.90844 -34.69872 -34.03368 -31.88680 -30.97870 -29.44702 -28.15247 -27.52828 -26.86726 -25.55891 -25.17005 -23.46412 -21.90944 -21.32912 -20.85144 -19.48963 -19.23174 -18.67177 -18.12352 -17.81587 -17.67312 -17.05095 -16.80415 -16.40223 -16.17301 -15.85212 -15.58554 -15.36429 -15.10999 -15.01748 -14.75823 -14.33541 -14.20060 -13.94183 -13.83454 -13.65116 -13.55037 -13.46040 -13.27923 -13.07689 -13.05689 -12.76697 -12.59056 -12.55948 -11.91953 -11.81306 -11.75738 -11.65363 -11.45428 -11.27532 -10.84507 -10.64183 -10.44478 -10.00209 -9.67987 -9.61567 -8.30673 -6.37557 0.19783 0.84922 1.32571 1.36076 1.46422 1.46893 1.80361 1.94745 2.21773 2.34051 2.61514 2.96649 2.99626 3.24237 3.29428 3.51627 3.79900 3.93686 4.00854 4.13929 4.22916 4.29471 4.30844 4.41401 4.43780 4.49558 4.54199 4.58336 4.64948 4.65658 4.69179 4.71583 4.79629 4.87951 4.90532 4.94773 5.00773 5.07798 5.11641 5.24580 5.45038 5.58875 5.79150 6.06955 6.26175 6.44651 6.67560 6.77292 6.79056 7.05880 7.29313 8.84247 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010037 B = 0.007045 C = 0.005099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2788.894182 B = 3973.376847 C = 5490.279164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.586 5.586 3 C 0.064 3.936 4 C 0.509 3.491 5 O -0.531 6.531 6 C 0.505 3.495 7 O -0.512 6.512 8 N -0.560 5.560 9 C 0.077 3.923 10 C -0.097 4.097 11 C -0.129 4.129 12 H 0.132 0.868 13 C -0.097 4.097 14 C 0.017 3.983 15 C 0.582 3.418 16 O -0.587 6.587 17 N -0.619 5.619 18 C 0.110 3.890 19 C 0.001 3.999 20 C -0.511 4.511 21 H 0.043 0.957 22 C 0.027 3.973 23 N -0.940 5.940 24 Si 0.924 3.076 25 H -0.281 1.281 26 H -0.286 1.286 27 H -0.222 1.222 28 C 0.118 3.882 29 H 0.088 0.912 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.130 0.870 38 H 0.081 0.919 39 H 0.133 0.867 40 H 0.118 0.882 41 H 0.047 0.953 42 H 0.080 0.920 43 H 0.068 0.932 44 H 0.267 0.733 45 H 0.079 0.921 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.385 -13.981 -13.364 20.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.318 5.318 3 C -0.078 4.078 4 C 0.291 3.709 5 O -0.410 6.410 6 C 0.289 3.711 7 O -0.387 6.387 8 N -0.295 5.295 9 C -0.043 4.043 10 C -0.134 4.134 11 C -0.149 4.149 12 H 0.150 0.850 13 C -0.135 4.135 14 C -0.072 4.072 15 C 0.372 3.628 16 O -0.468 6.468 17 N -0.350 5.350 18 C -0.013 4.013 19 C -0.019 4.019 20 C -0.549 4.549 21 H 0.062 0.938 22 C -0.172 4.172 23 N -0.579 5.579 24 Si 0.749 3.251 25 H -0.207 1.207 26 H -0.212 1.212 27 H -0.144 1.144 28 C -0.005 4.005 29 H 0.106 0.894 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.088 0.912 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.148 0.852 38 H 0.099 0.901 39 H 0.151 0.849 40 H 0.136 0.864 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.085 0.915 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.025 -13.726 -13.780 20.361 hybrid contribution -0.414 0.524 0.341 0.750 sum -6.439 -13.202 -13.439 19.908 Atomic orbital electron populations 1.22099 0.76022 1.04985 1.03857 1.47720 1.08803 1.06127 1.69130 1.22492 0.98161 0.83674 1.03490 1.19855 0.87728 0.84802 0.78477 1.90588 1.69518 1.30350 1.50519 1.20090 0.88857 0.83358 0.78837 1.90810 1.69774 1.30388 1.47750 1.48069 1.04402 1.07226 1.69760 1.23461 1.00894 0.78382 1.01512 1.22479 0.89559 1.02168 0.99241 1.24084 1.00473 0.92824 0.97473 0.84997 1.23476 1.02069 0.93169 0.94812 1.21613 0.81926 0.90674 1.13017 1.18900 0.83336 0.81962 0.78629 1.90617 1.28870 1.72239 1.55104 1.49466 1.34370 1.24120 1.27088 1.23388 0.89206 1.00173 0.88508 1.20612 0.93728 0.91732 0.95788 1.20922 0.93838 1.41657 0.98519 0.93847 1.25744 1.02052 0.94235 0.95192 1.70043 1.26051 1.44006 1.17827 0.86133 0.78832 0.78004 0.82169 1.20673 1.21214 1.14440 1.22965 0.98855 0.83754 0.94892 0.89376 0.90534 0.88812 0.91230 0.89327 0.89710 0.86771 0.87958 0.85215 0.90085 0.84889 0.86405 0.93434 0.90163 0.91457 0.92408 0.90293 0.92211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.38 10.65 127.77 1.36 2.74 16 2 N -0.59 -15.86 3.27 -873.50 -2.86 -18.72 16 3 C 0.06 1.75 8.37 127.77 1.07 2.82 16 4 C 0.51 15.53 7.72 87.27 0.67 16.20 16 5 O -0.53 -15.93 13.00 -3.24 -0.04 -15.97 16 6 C 0.50 16.87 5.57 87.27 0.49 17.36 16 7 O -0.51 -19.65 9.89 -3.26 -0.03 -19.68 16 8 N -0.56 -16.21 3.02 -768.64 -2.32 -18.53 16 9 C 0.08 1.57 6.22 86.80 0.54 2.11 16 10 C -0.10 -1.55 7.04 31.90 0.22 -1.33 16 11 C -0.13 -2.63 7.04 -9.83 -0.07 -2.70 16 12 H 0.13 2.59 8.14 -2.39 -0.02 2.57 16 13 C -0.10 -2.00 9.45 30.59 0.29 -1.71 16 14 C 0.02 0.49 3.09 2.99 0.01 0.50 16 15 C 0.58 22.92 6.37 87.66 0.56 23.48 16 16 O -0.59 -26.53 17.50 -3.03 -0.05 -26.58 16 17 N -0.62 -25.15 2.58 -858.83 -2.22 -27.37 16 18 C 0.11 4.47 6.04 83.10 0.50 4.97 16 19 C 0.00 0.04 2.74 -11.29 -0.03 0.01 16 20 C -0.51 -27.27 9.39 25.60 0.24 -27.03 16 21 H 0.04 2.57 8.06 -2.91 -0.02 2.55 16 22 C 0.03 1.45 5.47 84.65 0.46 1.91 16 23 N -0.94 -55.57 13.96 21.45 0.30 -55.27 16 24 Si 0.92 40.35 26.70 68.60 1.83 42.18 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 26 H -0.29 -12.41 7.11 99.48 0.71 -11.71 16 27 H -0.22 -8.67 3.78 99.48 0.38 -8.29 16 28 C 0.12 5.01 8.19 83.18 0.68 5.69 16 29 H 0.09 1.75 6.90 -2.38 -0.02 1.74 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.09 2.05 8.02 -2.39 -0.02 2.03 16 34 H 0.08 2.96 3.00 -2.39 -0.01 2.95 16 35 H 0.11 2.57 5.33 -2.38 -0.01 2.56 16 36 H 0.10 1.58 7.30 -2.39 -0.02 1.57 16 37 H 0.13 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.13 2.00 7.16 -2.39 -0.02 1.98 16 40 H 0.12 2.54 8.03 -2.39 -0.02 2.52 16 41 H 0.05 1.88 5.42 -2.39 -0.01 1.87 16 42 H 0.08 3.25 8.10 -2.39 -0.02 3.23 16 43 H 0.07 3.07 5.37 -2.39 -0.01 3.06 16 44 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 45 H 0.08 3.31 8.10 -2.39 -0.02 3.29 16 46 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -73.35 357.35 2.29 -71.06 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.69 Total: 23.86 kcal Atomic # 6 Polarization: 38.03 SS G_CDS: 7.00 Total: 45.03 kcal Atomic # 7 Polarization: -112.79 SS G_CDS: -7.10 Total: -119.89 kcal Atomic # 8 Polarization: -62.11 SS G_CDS: -0.13 Total: -62.23 kcal Atomic # 14 Polarization: 40.35 SS G_CDS: 1.83 Total: 42.18 kcal Total: -73.35 2.29 -71.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269036361.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.970 kcal (2) G-P(sol) polarization free energy of solvation -73.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds