Wall clock time and date at job start Tue Mar 31 2020 18:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99986 * 2 1 4 4 C 1.34774 * 119.99988 * 180.02562 * 2 1 3 5 5 O 1.21350 * 120.00303 * 3.62572 * 4 2 1 6 6 C 1.49459 * 120.00020 * 183.64080 * 4 2 1 7 7 O 1.21340 * 119.99585 * 354.02935 * 6 4 2 8 8 N 1.34770 * 119.99815 * 174.03419 * 6 4 2 9 9 C 1.47261 * 127.38215 * 359.10266 * 8 6 4 10 10 C 1.54391 * 105.05009 * 219.08249 * 9 8 6 11 11 H 1.09000 * 117.61318 * 116.53285 * 10 9 8 12 12 C 1.52995 * 118.89918 * 274.09690 * 10 9 8 13 13 C 1.52995 * 60.55567 * 91.10207 * 12 10 9 14 14 C 1.50698 * 119.54287 * 111.76719 * 13 12 10 15 15 O 1.21287 * 120.00015 * 289.29678 * 14 13 12 16 16 N 1.34781 * 120.00333 * 109.28838 * 14 13 12 17 17 C 1.47060 * 136.05366 * 359.64055 * 16 14 13 18 18 C 1.53238 * 88.08215 * 207.19811 * 17 16 14 19 19 C 1.50702 * 114.50706 * 220.45541 * 18 17 16 20 20 H 1.08003 * 119.99730 * 93.84036 * 19 18 17 21 21 C 1.37872 * 119.99937 * 273.84327 * 19 18 17 22 22 N 1.31506 * 120.00109 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99800 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47551 * 90.00154 * 23 21 19 25 25 H 1.48500 * 109.47273 * 210.00078 * 23 21 19 26 26 H 1.48497 * 109.47353 * 329.99689 * 23 21 19 27 27 C 1.47065 * 136.05957 * 179.97438 * 16 14 13 28 28 C 1.48150 * 127.83682 * 180.02562 * 8 6 4 29 29 H 1.09005 * 109.46619 * 269.99257 * 1 2 3 30 30 H 1.08996 * 109.47395 * 29.99261 * 1 2 3 31 31 H 1.08996 * 109.47293 * 149.99960 * 1 2 3 32 32 H 1.08991 * 109.47560 * 264.00387 * 3 2 1 33 33 H 1.08997 * 109.47235 * 24.00885 * 3 2 1 34 34 H 1.08999 * 109.46884 * 144.00109 * 3 2 1 35 35 H 1.09002 * 109.08323 * 100.71646 * 9 8 6 36 36 H 1.08995 * 111.29980 * 338.58015 * 9 8 6 37 37 H 1.09008 * 117.44098 * 198.75053 * 12 10 9 38 38 H 1.08999 * 117.44507 * 343.45181 * 12 10 9 39 39 H 1.09001 * 113.46636 * 321.92787 * 17 16 14 40 40 H 1.09000 * 113.47518 * 92.36908 * 17 16 14 41 41 H 1.09005 * 114.02288 * 87.71275 * 18 17 16 42 42 H 0.97008 * 120.00156 * 180.02562 * 22 21 19 43 43 H 1.08997 * 113.47088 * 267.63584 * 27 16 14 44 44 H 1.09010 * 113.46567 * 38.01392 * 27 16 14 45 45 H 1.09000 * 110.40751 * 21.61852 * 28 8 6 46 46 H 1.09007 * 110.49816 * 259.24497 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5340 -2.2170 -0.0674 6 6 3.6312 -1.1685 0.0817 7 8 4.2420 -0.1209 0.0396 8 7 4.2983 -2.3333 0.2024 9 6 3.7253 -3.6872 0.2870 10 6 4.5957 -4.4267 1.3259 11 1 4.1123 -4.7606 2.2440 12 6 5.8834 -5.1091 0.8602 13 6 5.9335 -3.6585 1.3439 14 6 6.6430 -3.3288 2.6319 15 8 6.1636 -3.6692 3.6927 16 7 7.8105 -2.6559 2.6050 17 6 8.6865 -2.0964 1.5647 18 6 9.8630 -2.2797 2.5292 19 6 10.8538 -1.1442 2.5295 20 1 10.7565 -0.3429 3.2471 21 6 11.8845 -1.1283 1.6139 22 7 12.0032 -2.1043 0.7405 23 14 13.1130 0.2788 1.6149 24 1 14.2474 -0.0549 2.5132 25 1 13.6204 0.4940 0.2359 26 1 12.4480 1.5163 2.0962 27 6 8.7720 -2.1632 3.6028 28 6 5.7627 -2.5361 0.2981 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5138 32 1 2.4722 1.5298 -1.0219 33 1 1.5662 2.0528 0.4181 34 1 3.0992 1.1677 0.6040 35 1 3.8046 -4.1692 -0.6874 36 1 2.6860 -3.6575 0.6140 37 1 6.3121 -5.8709 1.5114 38 1 5.9996 -5.2864 -0.2090 39 1 8.7560 -2.7207 0.6739 40 1 8.4736 -1.0528 1.3330 41 1 10.3332 -3.2617 2.4740 42 1 12.7286 -2.0933 0.0965 43 1 8.5821 -1.1376 3.9193 44 1 8.9134 -2.8439 4.4425 45 1 6.2516 -1.6228 0.6374 46 1 6.1686 -2.8485 -0.6642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269036766.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:50 Heat of formation + Delta-G solvation = 2.516014 kcal Electronic energy + Delta-G solvation = -29551.761526 eV Core-core repulsion = 25445.416894 eV Total energy + Delta-G solvation = -4106.344632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.30701 -40.22028 -38.91372 -38.19822 -36.90594 -36.00876 -33.66563 -32.71952 -29.88679 -28.84492 -28.30956 -27.61073 -26.18855 -25.41355 -25.00471 -23.12279 -22.17410 -21.19181 -19.81054 -19.59973 -18.18319 -17.31909 -17.11808 -16.85624 -16.72677 -16.36615 -16.00902 -15.52695 -15.28002 -14.81888 -14.73214 -14.47872 -13.91290 -13.88798 -13.55352 -13.33178 -13.27851 -12.94837 -12.82757 -12.56048 -12.54963 -12.43661 -12.35246 -11.89654 -11.75020 -11.53742 -11.30026 -11.24435 -10.95539 -10.86300 -10.60629 -10.37098 -10.13475 -9.67147 -9.47872 -9.25075 -9.19080 -9.05612 -8.88486 -8.60590 -7.92459 -6.20288 -4.25814 1.21768 1.97022 2.81200 2.97023 3.09755 3.23337 3.30827 3.32884 3.39987 3.55252 3.97884 4.31199 4.32605 4.48919 4.74401 4.79382 4.82792 4.91702 5.01662 5.02420 5.10304 5.27634 5.36273 5.38898 5.52506 5.56687 5.59131 5.67467 5.73443 5.79684 5.85183 6.02166 6.02460 6.06056 6.13948 6.23519 6.40708 6.53438 6.62067 6.67558 6.79482 7.09913 7.39274 7.52559 7.75624 7.77483 8.15531 8.44051 8.68995 8.78259 9.41291 10.89422 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013598 B = 0.003065 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.620025 B = 9132.704274 C =10340.396422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.592 5.592 3 C 0.062 3.938 4 C 0.511 3.489 5 O -0.518 6.518 6 C 0.526 3.474 7 O -0.512 6.512 8 N -0.590 5.590 9 C 0.118 3.882 10 C -0.146 4.146 11 H 0.131 0.869 12 C -0.102 4.102 13 C -0.179 4.179 14 C 0.577 3.423 15 O -0.562 6.562 16 N -0.636 5.636 17 C 0.098 3.902 18 C 0.036 3.964 19 C -0.517 4.517 20 H 0.064 0.936 21 C 0.069 3.931 22 N -0.885 5.885 23 Si 0.896 3.104 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.272 1.272 27 C 0.100 3.900 28 C 0.144 3.856 29 H 0.061 0.939 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.117 0.883 37 H 0.112 0.888 38 H 0.106 0.894 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.264 0.736 43 H 0.074 0.926 44 H 0.058 0.942 45 H 0.098 0.902 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.335 0.458 -5.272 20.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.326 5.326 3 C -0.080 4.080 4 C 0.294 3.706 5 O -0.394 6.394 6 C 0.309 3.691 7 O -0.388 6.388 8 N -0.324 5.324 9 C -0.004 4.004 10 C -0.165 4.165 11 H 0.149 0.851 12 C -0.140 4.140 13 C -0.183 4.183 14 C 0.366 3.634 15 O -0.442 6.442 16 N -0.368 5.368 17 C -0.024 4.024 18 C 0.017 3.983 19 C -0.555 4.555 20 H 0.082 0.918 21 C -0.135 4.135 22 N -0.522 5.522 23 Si 0.723 3.277 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.197 1.197 27 C -0.021 4.021 28 C 0.023 3.977 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.127 0.873 35 H 0.098 0.902 36 H 0.134 0.866 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.092 0.908 44 H 0.076 0.924 45 H 0.116 0.884 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.739 0.269 -4.957 20.354 hybrid contribution 0.668 0.895 -0.109 1.123 sum -19.071 1.164 -5.066 19.766 Atomic orbital electron populations 1.21805 0.78050 1.03719 1.02459 1.47590 1.07438 1.06606 1.70942 1.22460 0.98497 0.83229 1.03766 1.20038 0.88222 0.84180 0.78204 1.90671 1.69771 1.30467 1.48537 1.19643 0.88033 0.82896 0.78503 1.90701 1.69379 1.29467 1.49272 1.48844 1.08089 1.06215 1.69242 1.22185 0.99444 0.80219 0.98529 1.23881 0.88511 1.02170 1.01956 0.85100 1.23086 0.97108 0.91404 1.02413 1.22602 1.03543 0.94250 0.97906 1.18467 0.78744 0.78239 0.87993 1.90646 1.65908 1.56068 1.31589 1.49890 1.19510 1.52846 1.14580 1.23602 0.88411 0.97089 0.93316 1.20287 0.89944 0.99255 0.88790 1.20893 1.10538 1.06824 1.17285 0.91826 1.25014 0.97309 0.95983 0.95149 1.69944 1.31972 1.31582 1.18697 0.86535 0.81338 0.82461 0.77371 1.20496 1.21128 1.19673 1.23390 0.86696 0.97794 0.94256 1.21819 0.79574 0.98413 0.97910 0.92036 0.90546 0.90054 0.91921 0.91325 0.87332 0.90167 0.86551 0.86971 0.87531 0.91979 0.90724 0.91344 0.92616 0.90811 0.92394 0.88374 0.89034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.44 59.85 0.62 1.22 16 2 N -0.59 -6.14 3.27 -190.03 -0.62 -6.76 16 3 C 0.06 0.57 9.55 59.85 0.57 1.14 16 4 C 0.51 6.59 7.70 -11.58 -0.09 6.50 16 5 O -0.52 -7.14 13.37 5.50 0.07 -7.06 16 6 C 0.53 7.58 7.86 -11.58 -0.09 7.49 16 7 O -0.51 -8.14 13.41 5.51 0.07 -8.06 16 8 N -0.59 -8.23 3.30 -170.55 -0.56 -8.79 16 9 C 0.12 1.39 6.26 -2.90 -0.02 1.38 16 10 C -0.15 -1.85 6.76 -89.22 -0.60 -2.45 16 11 H 0.13 1.73 8.14 -51.93 -0.42 1.31 16 12 C -0.10 -1.22 9.89 -26.74 -0.26 -1.48 16 13 C -0.18 -2.73 2.70 -154.28 -0.42 -3.15 16 14 C 0.58 11.37 7.68 -10.98 -0.08 11.29 16 15 O -0.56 -12.67 17.59 5.55 0.10 -12.58 16 16 N -0.64 -12.90 3.63 -185.40 -0.67 -13.58 16 17 C 0.10 2.02 6.59 -8.65 -0.06 1.97 16 18 C 0.04 0.84 3.76 -91.38 -0.34 0.50 16 19 C -0.52 -13.01 8.84 -34.44 -0.30 -13.32 16 20 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 21 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 22 N -0.89 -23.69 13.26 55.43 0.74 -22.96 16 23 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 27 C 0.10 2.10 8.19 -8.50 -0.07 2.03 16 28 C 0.14 2.09 6.15 -2.42 -0.01 2.08 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.37 8.07 -51.93 -0.42 -0.05 16 31 H 0.08 0.64 7.37 -51.93 -0.38 0.25 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.44 8.03 -51.93 -0.42 0.02 16 34 H 0.11 1.25 5.36 -51.93 -0.28 0.97 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.12 1.42 5.65 -51.93 -0.29 1.12 16 37 H 0.11 1.34 8.14 -51.92 -0.42 0.92 16 38 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.07 1.55 8.10 -51.93 -0.42 1.12 16 41 H 0.07 1.72 8.11 -51.93 -0.42 1.30 16 42 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 43 H 0.07 1.50 8.10 -51.93 -0.42 1.08 16 44 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 45 H 0.10 1.63 6.80 -51.93 -0.35 1.28 16 46 H 0.09 1.15 8.14 -51.92 -0.42 0.73 16 LS Contribution 381.50 15.07 5.75 5.75 Total: -1.00 -31.15 381.50 -8.16 -39.31 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -6.76 Total: 2.96 kcal Atomic # 6 Polarization: 18.11 SS G_CDS: -1.26 Total: 16.86 kcal Atomic # 7 Polarization: -50.96 SS G_CDS: -1.12 Total: -52.08 kcal Atomic # 8 Polarization: -27.95 SS G_CDS: 0.24 Total: -27.70 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.15 -8.16 -39.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269036766.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.825 kcal (2) G-P(sol) polarization free energy of solvation -31.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds