Wall clock time and date at job start Tue Mar 31 2020 18:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 119.99986 * 2 1 4 4 C 1.34774 * 119.99988 * 180.02562 * 2 1 3 5 5 O 1.21350 * 120.00303 * 3.62572 * 4 2 1 6 6 C 1.49459 * 120.00020 * 183.64080 * 4 2 1 7 7 O 1.21340 * 119.99585 * 354.02935 * 6 4 2 8 8 N 1.34770 * 119.99815 * 174.03419 * 6 4 2 9 9 C 1.47261 * 127.38215 * 359.10266 * 8 6 4 10 10 C 1.54391 * 105.05009 * 219.08249 * 9 8 6 11 11 H 1.09000 * 117.61318 * 116.53285 * 10 9 8 12 12 C 1.52995 * 118.89918 * 274.09690 * 10 9 8 13 13 C 1.52995 * 60.55567 * 91.10207 * 12 10 9 14 14 C 1.50698 * 119.54287 * 111.76719 * 13 12 10 15 15 O 1.21287 * 120.00015 * 289.29678 * 14 13 12 16 16 N 1.34781 * 120.00333 * 109.28838 * 14 13 12 17 17 C 1.47060 * 136.05366 * 359.64055 * 16 14 13 18 18 C 1.53238 * 88.08215 * 207.19811 * 17 16 14 19 19 C 1.50702 * 114.50706 * 220.45541 * 18 17 16 20 20 H 1.08003 * 119.99730 * 93.84036 * 19 18 17 21 21 C 1.37872 * 119.99937 * 273.84327 * 19 18 17 22 22 N 1.31506 * 120.00109 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99800 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47551 * 90.00154 * 23 21 19 25 25 H 1.48500 * 109.47273 * 210.00078 * 23 21 19 26 26 H 1.48497 * 109.47353 * 329.99689 * 23 21 19 27 27 C 1.47065 * 136.05957 * 179.97438 * 16 14 13 28 28 C 1.48150 * 127.83682 * 180.02562 * 8 6 4 29 29 H 1.09005 * 109.46619 * 269.99257 * 1 2 3 30 30 H 1.08996 * 109.47395 * 29.99261 * 1 2 3 31 31 H 1.08996 * 109.47293 * 149.99960 * 1 2 3 32 32 H 1.08991 * 109.47560 * 264.00387 * 3 2 1 33 33 H 1.08997 * 109.47235 * 24.00885 * 3 2 1 34 34 H 1.08999 * 109.46884 * 144.00109 * 3 2 1 35 35 H 1.09002 * 109.08323 * 100.71646 * 9 8 6 36 36 H 1.08995 * 111.29980 * 338.58015 * 9 8 6 37 37 H 1.09008 * 117.44098 * 198.75053 * 12 10 9 38 38 H 1.08999 * 117.44507 * 343.45181 * 12 10 9 39 39 H 1.09001 * 113.46636 * 321.92787 * 17 16 14 40 40 H 1.09000 * 113.47518 * 92.36908 * 17 16 14 41 41 H 1.09005 * 114.02288 * 87.71275 * 18 17 16 42 42 H 0.97008 * 120.00156 * 180.02562 * 22 21 19 43 43 H 1.08997 * 113.47088 * 267.63584 * 27 16 14 44 44 H 1.09010 * 113.46567 * 38.01392 * 27 16 14 45 45 H 1.09000 * 110.40751 * 21.61852 * 28 8 6 46 46 H 1.09007 * 110.49816 * 259.24497 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 -0.0005 5 8 1.5340 -2.2170 -0.0674 6 6 3.6312 -1.1685 0.0817 7 8 4.2420 -0.1209 0.0396 8 7 4.2983 -2.3333 0.2024 9 6 3.7253 -3.6872 0.2870 10 6 4.5957 -4.4267 1.3259 11 1 4.1123 -4.7606 2.2440 12 6 5.8834 -5.1091 0.8602 13 6 5.9335 -3.6585 1.3439 14 6 6.6430 -3.3288 2.6319 15 8 6.1636 -3.6692 3.6927 16 7 7.8105 -2.6559 2.6050 17 6 8.6865 -2.0964 1.5647 18 6 9.8630 -2.2797 2.5292 19 6 10.8538 -1.1442 2.5295 20 1 10.7565 -0.3429 3.2471 21 6 11.8845 -1.1283 1.6139 22 7 12.0032 -2.1043 0.7405 23 14 13.1130 0.2788 1.6149 24 1 14.2474 -0.0549 2.5132 25 1 13.6204 0.4940 0.2359 26 1 12.4480 1.5163 2.0962 27 6 8.7720 -2.1632 3.6028 28 6 5.7627 -2.5361 0.2981 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8899 -0.5138 32 1 2.4722 1.5298 -1.0219 33 1 1.5662 2.0528 0.4181 34 1 3.0992 1.1677 0.6040 35 1 3.8046 -4.1692 -0.6874 36 1 2.6860 -3.6575 0.6140 37 1 6.3121 -5.8709 1.5114 38 1 5.9996 -5.2864 -0.2090 39 1 8.7560 -2.7207 0.6739 40 1 8.4736 -1.0528 1.3330 41 1 10.3332 -3.2617 2.4740 42 1 12.7286 -2.0933 0.0965 43 1 8.5821 -1.1376 3.9193 44 1 8.9134 -2.8439 4.4425 45 1 6.2516 -1.6228 0.6374 46 1 6.1686 -2.8485 -0.6642 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269036766.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:49 Heat of formation + Delta-G solvation = -17.596576 kcal Electronic energy + Delta-G solvation = -29552.633673 eV Core-core repulsion = 25445.416894 eV Total energy + Delta-G solvation = -4107.216779 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.38981 -41.44737 -40.31015 -39.34437 -38.47318 -36.89996 -34.74586 -34.65815 -31.42706 -29.88546 -29.29868 -28.53198 -27.21319 -27.08474 -26.70353 -24.33869 -23.35875 -22.29218 -21.37843 -20.59726 -19.58939 -18.73670 -18.43428 -18.08295 -17.76162 -17.69760 -17.19418 -16.75921 -16.66747 -16.37854 -16.01692 -15.66407 -15.20066 -14.95272 -14.77199 -14.64333 -14.25948 -14.15839 -13.98092 -13.71955 -13.61379 -13.46469 -13.30988 -13.25370 -13.10665 -13.00540 -12.74603 -12.73135 -12.62618 -12.23050 -12.18578 -11.77656 -11.40442 -11.15837 -11.06628 -10.78751 -10.55324 -10.44088 -10.14712 -9.82577 -9.62824 -8.16636 -6.27377 0.19686 1.02313 1.39528 1.47236 1.49704 1.58636 1.86385 1.95153 2.24110 2.35407 2.46369 3.01508 3.13275 3.24786 3.37515 3.41393 3.73189 3.94292 4.19113 4.21074 4.27973 4.33469 4.37332 4.40903 4.44252 4.48739 4.55736 4.63247 4.66683 4.70255 4.71039 4.78168 4.81500 4.85062 4.87967 4.95908 5.01577 5.05962 5.08291 5.26374 5.58676 5.81013 5.81408 6.07394 6.22883 6.42198 6.75464 6.80227 6.82722 7.07483 7.42448 8.93209 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013598 B = 0.003065 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.620025 B = 9132.704274 C =10340.396422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.587 5.587 3 C 0.063 3.937 4 C 0.507 3.493 5 O -0.532 6.532 6 C 0.516 3.484 7 O -0.535 6.535 8 N -0.595 5.595 9 C 0.124 3.876 10 C -0.132 4.132 11 H 0.123 0.877 12 C -0.076 4.076 13 C -0.208 4.208 14 C 0.572 3.428 15 O -0.596 6.596 16 N -0.638 5.638 17 C 0.118 3.882 18 C 0.028 3.972 19 C -0.530 4.530 20 H 0.063 0.937 21 C 0.025 3.975 22 N -0.914 5.914 23 Si 0.956 3.044 24 H -0.277 1.277 25 H -0.284 1.284 26 H -0.267 1.267 27 C 0.103 3.897 28 C 0.150 3.850 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.114 0.886 37 H 0.111 0.889 38 H 0.141 0.859 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.043 0.957 42 H 0.265 0.735 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.717 0.790 -6.542 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.320 5.320 3 C -0.078 4.078 4 C 0.289 3.711 5 O -0.410 6.410 6 C 0.301 3.699 7 O -0.413 6.413 8 N -0.328 5.328 9 C 0.003 3.997 10 C -0.151 4.151 11 H 0.141 0.859 12 C -0.114 4.114 13 C -0.212 4.212 14 C 0.363 3.637 15 O -0.479 6.479 16 N -0.370 5.370 17 C -0.005 4.005 18 C 0.008 3.992 19 C -0.568 4.568 20 H 0.082 0.918 21 C -0.176 4.176 22 N -0.552 5.552 23 Si 0.782 3.218 24 H -0.203 1.203 25 H -0.209 1.209 26 H -0.192 1.192 27 C -0.019 4.019 28 C 0.028 3.972 29 H 0.089 0.911 30 H 0.125 0.875 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.126 0.874 36 H 0.132 0.868 37 H 0.130 0.870 38 H 0.159 0.841 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.076 0.924 45 H 0.089 0.911 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.147 0.612 -6.225 22.053 hybrid contribution 1.047 0.802 0.374 1.371 sum -20.100 1.413 -5.851 20.982 Atomic orbital electron populations 1.22045 0.75902 1.04952 1.03426 1.47785 1.08782 1.06140 1.69291 1.22457 0.98183 0.83463 1.03730 1.19831 0.87465 0.84932 0.78875 1.90657 1.69629 1.30950 1.49780 1.20099 0.88935 0.82713 0.78170 1.90699 1.70076 1.30209 1.50325 1.48981 1.07988 1.06947 1.68859 1.22285 0.98783 0.79123 0.99534 1.23963 0.87896 1.01233 1.02031 0.85871 1.23284 0.95182 0.88552 1.04343 1.22519 1.05604 0.96490 0.96560 1.19234 0.78176 0.76991 0.89341 1.90617 1.66614 1.57232 1.33430 1.49897 1.19999 1.53117 1.13943 1.23273 0.87118 0.97112 0.92951 1.20156 0.90557 0.97461 0.90985 1.21173 1.11204 1.07240 1.17182 0.91839 1.25705 0.98931 0.98101 0.94887 1.70036 1.32696 1.33105 1.19378 0.85586 0.79142 0.79848 0.77272 1.20290 1.20923 1.19155 1.23271 0.86403 0.98213 0.94010 1.21748 0.80012 0.96901 0.98539 0.91144 0.87530 0.90642 0.91529 0.88150 0.89932 0.87379 0.86832 0.87025 0.84114 0.91455 0.90871 0.93847 0.92561 0.90291 0.92363 0.91138 0.86676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.94 10.44 127.77 1.33 2.27 16 2 N -0.59 -11.27 3.27 -873.50 -2.86 -14.13 16 3 C 0.06 1.06 9.55 127.77 1.22 2.28 16 4 C 0.51 12.62 7.70 87.27 0.67 13.29 16 5 O -0.53 -14.04 13.37 -3.25 -0.04 -14.08 16 6 C 0.52 14.74 7.86 87.27 0.69 15.42 16 7 O -0.54 -17.22 13.41 -3.22 -0.04 -17.26 16 8 N -0.59 -15.99 3.30 -811.86 -2.68 -18.67 16 9 C 0.12 2.67 6.26 86.71 0.54 3.21 16 10 C -0.13 -3.12 6.76 -9.89 -0.07 -3.18 16 11 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 12 C -0.08 -1.62 9.89 30.59 0.30 -1.32 16 13 C -0.21 -6.14 2.70 -52.04 -0.14 -6.28 16 14 C 0.57 22.68 7.68 87.66 0.67 23.35 16 15 O -0.60 -27.29 17.59 -3.05 -0.05 -27.34 16 16 N -0.64 -26.23 3.63 -858.86 -3.12 -29.36 16 17 C 0.12 4.92 6.59 83.09 0.55 5.46 16 18 C 0.03 1.30 3.76 -11.29 -0.04 1.26 16 19 C -0.53 -26.91 8.84 25.60 0.23 -26.68 16 20 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 21 C 0.02 1.26 5.46 84.65 0.46 1.72 16 22 N -0.91 -49.24 13.26 21.44 0.28 -48.96 16 23 Si 0.96 40.78 29.54 68.60 2.03 42.81 16 24 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 26 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 27 C 0.10 4.40 8.19 83.18 0.68 5.08 16 28 C 0.15 4.20 6.15 86.52 0.53 4.74 16 29 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.11 0.66 8.07 -2.39 -0.02 0.64 16 31 H 0.07 1.04 7.37 -2.39 -0.02 1.02 16 32 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.10 1.03 8.03 -2.39 -0.02 1.01 16 34 H 0.08 1.90 5.36 -2.47 -0.01 1.89 16 35 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.11 2.59 5.65 -2.39 -0.01 2.57 16 37 H 0.11 2.43 8.14 -2.38 -0.02 2.41 16 38 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 39 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 40 H 0.07 3.07 8.10 -2.39 -0.02 3.05 16 41 H 0.04 2.25 8.11 -2.38 -0.02 2.23 16 42 H 0.27 13.60 8.31 -92.70 -0.77 12.83 16 43 H 0.08 3.26 8.10 -2.39 -0.02 3.24 16 44 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 45 H 0.07 2.37 6.80 -2.39 -0.02 2.35 16 46 H 0.12 2.65 8.14 -2.38 -0.02 2.63 16 Total: -1.00 -68.21 381.50 2.14 -66.07 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 1.00 Total: 20.27 kcal Atomic # 6 Polarization: 33.01 SS G_CDS: 7.63 Total: 40.64 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -8.38 Total: -111.11 kcal Atomic # 8 Polarization: -58.54 SS G_CDS: -0.14 Total: -58.68 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -68.21 2.14 -66.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269036766.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.474 kcal (2) G-P(sol) polarization free energy of solvation -68.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds