Wall clock time and date at job start Tue Mar 31 2020 18:16:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.34666 * 119.70197 * 2 1
4 4 O 1.21965 * 119.95661 * 0.02562 * 3 2 1
5 5 C 1.41238 * 120.08578 * 180.02562 * 3 2 1
6 6 C 1.36107 * 119.50961 * 359.97438 * 5 3 2
7 7 C 1.40402 * 119.41767 * 359.97438 * 6 5 3
8 8 C 1.36295 * 119.90380 * 0.26210 * 7 6 5
9 9 C 1.47882 * 119.75546 * 179.74443 * 8 7 6
10 10 O 1.21539 * 120.00371 * 179.97438 * 9 8 7
11 11 N 1.34780 * 120.00481 * 359.97438 * 9 8 7
12 12 C 1.46499 * 120.00553 * 174.85358 * 11 9 8
13 13 C 1.53002 * 109.49621 * 302.89315 * 12 11 9
14 14 O 1.42904 * 109.47319 * 300.68009 * 13 12 11
15 15 C 1.53036 * 109.49756 * 62.95424 * 12 11 9
16 16 C 1.53048 * 109.53635 * 58.58957 * 15 12 11
17 17 C 1.53185 * 109.31240 * 61.36141 * 16 15 12
18 18 N 1.46932 * 108.77851 * 305.36960 * 17 16 15
19 19 C 1.36935 * 120.62752 * 233.60990 * 18 17 16
20 20 H 1.08005 * 120.00406 * 31.62847 * 19 18 17
21 21 C 1.38816 * 120.00041 * 211.63132 * 19 18 17
22 22 N 1.31620 * 119.99503 * 10.94445 * 21 19 18
23 23 Si 1.86795 * 120.00322 * 190.94893 * 21 19 18
24 24 H 1.48500 * 109.47121 * 89.99595 * 23 21 19
25 25 H 1.48505 * 109.47103 * 210.00017 * 23 21 19
26 26 H 1.48502 * 109.46897 * 329.99524 * 23 21 19
27 27 C 1.46918 * 118.73891 * 53.60594 * 18 17 16
28 28 H 1.08994 * 109.47081 * 359.97438 * 1 2 3
29 29 H 1.09009 * 109.47261 * 120.00094 * 1 2 3
30 30 H 1.09000 * 109.47210 * 239.99674 * 1 2 3
31 31 H 1.08004 * 120.24720 * 179.97438 * 5 3 2
32 32 H 1.08001 * 120.29296 * 180.02562 * 6 5 3
33 33 H 1.07998 * 120.04876 * 179.97438 * 7 6 5
34 34 H 0.97000 * 119.99595 * 354.86216 * 11 9 8
35 35 H 1.08996 * 109.47237 * 60.67289 * 13 12 11
36 36 H 1.08993 * 109.47174 * 180.67388 * 13 12 11
37 37 H 0.96693 * 114.00395 * 180.02562 * 14 13 12
38 38 H 1.08996 * 109.46086 * 178.60518 * 15 12 11
39 39 H 1.09001 * 109.46289 * 298.57211 * 15 12 11
40 40 H 1.08996 * 109.49503 * 181.31730 * 16 15 12
41 41 H 1.08998 * 109.49227 * 301.41471 * 16 15 12
42 42 H 1.09003 * 109.58418 * 65.15293 * 17 16 15
43 43 H 1.08997 * 109.58731 * 185.57726 * 17 16 15
44 44 H 0.97006 * 119.99903 * 179.97438 * 22 21 19
45 45 H 1.08999 * 109.58879 * 186.60782 * 27 18 17
46 46 H 1.09002 * 109.58952 * 66.17994 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1323 1.1697 0.0000
4 8 1.5162 2.2223 0.0005
5 6 3.5446 1.1792 -0.0005
6 6 4.2230 -0.0008 -0.0005
7 6 3.5064 -1.2082 0.0006
8 6 2.1436 -1.1895 -0.0038
9 6 1.3921 -2.4632 -0.0084
10 8 0.1768 -2.4518 -0.0118
11 7 2.0549 -3.6368 -0.0087
12 6 1.3146 -4.8962 0.1006
13 6 0.4744 -4.8854 1.3792
14 8 1.3314 -4.7220 2.5110
15 6 0.3959 -5.0557 -1.1129
16 6 1.2322 -5.0329 -2.3945
17 6 2.2181 -6.2052 -2.3770
18 7 3.0079 -6.1406 -1.1397
19 6 4.3765 -6.1486 -1.1845
20 1 4.8920 -5.7055 -2.0238
21 6 5.1015 -6.7263 -0.1512
22 7 4.4864 -7.4516 0.7587
23 14 6.9496 -6.4741 -0.0520
24 1 7.2412 -5.2614 0.7538
25 1 7.5770 -7.6575 0.5895
26 1 7.5000 -6.3032 -1.4207
27 6 2.3015 -6.0671 0.1463
28 1 -0.3633 1.0276 0.0005
29 1 -0.3634 -0.5139 -0.8900
30 1 -0.3633 -0.5139 0.8899
31 1 4.0824 2.1158 -0.0010
32 1 5.3029 -0.0083 -0.0005
33 1 4.0343 -2.1503 0.0002
34 1 3.0221 -3.6474 -0.0812
35 1 -0.2365 -4.0601 1.3399
36 1 -0.0669 -5.8274 1.4663
37 1 0.8656 -4.7065 3.3582
38 1 -0.1361 -6.0044 -1.0434
39 1 -0.3233 -4.2369 -1.1340
40 1 0.5750 -5.1230 -3.2593
41 1 1.7838 -4.0946 -2.4522
42 1 1.6681 -7.1457 -2.4106
43 1 2.8823 -6.1370 -3.2385
44 1 4.9930 -7.8557 1.4806
45 1 3.0206 -5.9076 0.9498
46 1 1.7582 -6.9962 0.3185
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001271982884.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:16:42
Heat of formation + Delta-G solvation = -49.214818 kcal
Electronic energy + Delta-G solvation = -31203.073828 eV
Core-core repulsion = 27094.485980 eV
Total energy + Delta-G solvation = -4108.587849 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 1.03 seconds
Orbital eigenvalues (eV)
-41.56222 -39.98797 -37.80513 -36.62244 -36.00115 -34.77304 -33.77086 -32.81704
-31.10256 -30.04800 -29.20663 -27.59096 -25.57759 -25.18614 -24.86700 -22.66589
-22.37565 -21.49322 -20.44336 -18.87280 -18.02683 -17.36419 -16.96462 -16.87252
-16.79458 -16.25080 -15.67851 -15.36873 -14.84028 -14.67982 -14.64381 -14.18576
-14.13464 -13.63450 -13.45506 -13.15609 -13.03485 -12.76036 -12.60921 -12.47157
-12.40752 -12.17847 -12.03450 -11.71474 -11.54096 -11.27448 -11.01963 -10.86217
-10.58498 -10.30315 -10.20937 -10.16693 -10.07518 -9.93968 -9.74355 -9.71145
-9.15418 -8.67603 -8.62654 -8.06509 -6.76762 -5.91658 -3.41472 0.40288
1.61931 2.45749 2.94507 3.27569 3.31273 3.35902 3.37234 3.64942
4.36264 4.50987 4.52434 4.55024 4.78889 5.09032 5.17914 5.20698
5.30024 5.46841 5.47922 5.48620 5.56598 5.62298 5.69521 5.78037
5.81634 5.84082 5.93249 5.95939 6.11474 6.15534 6.26572 6.30868
6.37021 6.41215 6.49171 6.71128 6.83348 6.91147 6.95185 7.14986
7.53681 7.67780 7.79798 7.93947 7.95146 8.29268 8.35048 9.07554
9.68646 10.27480 11.15884
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.011826 B = 0.004704 C = 0.003950
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2367.146362 B = 5950.536980 C = 7087.052426
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.068 3.932
2 N -0.476 5.476
3 C 0.512 3.488
4 O -0.557 6.557
5 C -0.227 4.227
6 C -0.021 4.021
7 C -0.183 4.183
8 C 0.124 3.876
9 C 0.552 3.448
10 O -0.539 6.539
11 N -0.663 5.663
12 C 0.156 3.844
13 C 0.067 3.933
14 O -0.560 6.560
15 C -0.121 4.121
16 C -0.129 4.129
17 C 0.141 3.859
18 N -0.591 5.591
19 C -0.264 4.264
20 H 0.066 0.934
21 C 0.010 3.990
22 N -0.897 5.897
23 Si 0.902 3.098
24 H -0.285 1.285
25 H -0.290 1.290
26 H -0.279 1.279
27 C 0.176 3.824
28 H 0.088 0.912
29 H 0.086 0.914
30 H 0.085 0.915
31 H 0.151 0.849
32 H 0.143 0.857
33 H 0.155 0.845
34 H 0.412 0.588
35 H 0.059 0.941
36 H 0.048 0.952
37 H 0.369 0.631
38 H 0.064 0.936
39 H 0.071 0.929
40 H 0.051 0.949
41 H 0.055 0.945
42 H 0.018 0.982
43 H 0.054 0.946
44 H 0.256 0.744
45 H 0.106 0.894
46 H 0.035 0.965
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.212 8.439 0.138 9.919
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 N -0.187 5.187
3 C 0.314 3.686
4 O -0.441 6.441
5 C -0.250 4.250
6 C -0.042 4.042
7 C -0.208 4.208
8 C 0.013 3.987
9 C 0.336 3.664
10 O -0.420 6.420
11 N -0.313 5.313
12 C 0.068 3.932
13 C -0.012 4.012
14 O -0.363 6.363
15 C -0.159 4.159
16 C -0.168 4.168
17 C 0.015 3.985
18 N -0.314 5.314
19 C -0.393 4.393
20 H 0.084 0.916
21 C -0.190 4.190
22 N -0.540 5.540
23 Si 0.732 3.268
24 H -0.212 1.212
25 H -0.217 1.217
26 H -0.204 1.204
27 C 0.049 3.951
28 H 0.107 0.893
29 H 0.105 0.895
30 H 0.104 0.896
31 H 0.169 0.831
32 H 0.161 0.839
33 H 0.172 0.828
34 H 0.250 0.750
35 H 0.077 0.923
36 H 0.067 0.933
37 H 0.215 0.785
38 H 0.083 0.917
39 H 0.090 0.910
40 H 0.070 0.930
41 H 0.074 0.926
42 H 0.036 0.964
43 H 0.073 0.927
44 H 0.066 0.934
45 H 0.124 0.876
46 H 0.052 0.948
Dipole moment (debyes) X Y Z Total
from point charges -5.960 8.958 -0.196 10.761
hybrid contribution 1.057 -0.145 0.524 1.189
sum -4.903 8.813 0.328 10.090
Atomic orbital electron populations
1.22270 0.76147 1.03976 1.04939 1.45375 1.09907 1.05181 1.58246
1.17313 0.89319 0.82539 0.79444 1.90910 1.69984 1.29181 1.53984
1.22335 0.92635 1.00191 1.09792 1.21451 1.01169 0.91395 0.90221
1.21081 0.91386 1.00545 1.07749 1.20354 0.92530 0.87027 0.98809
1.17804 0.87117 0.83278 0.78198 1.90707 1.12932 1.87120 1.51192
1.45794 1.11678 1.04079 1.69768 1.21408 0.93936 0.85575 0.92234
1.22572 0.92580 0.99997 0.86074 1.86575 1.36952 1.96663 1.16138
1.21764 0.97828 1.01987 0.94359 1.21928 0.98219 1.00745 0.95920
1.20996 0.92884 0.94059 0.90558 1.44035 1.02156 1.85454 0.99710
1.19160 0.81080 1.31925 1.07164 0.91589 1.25197 0.97923 0.96617
0.99234 1.69946 1.34912 1.33751 1.15411 0.86307 0.85322 0.77395
0.77810 1.21220 1.21669 1.20387 1.21033 0.93130 0.90362 0.90565
0.89324 0.89519 0.89641 0.83130 0.83916 0.82777 0.74952 0.92264
0.93349 0.78538 0.91749 0.90999 0.92993 0.92578 0.96368 0.92742
0.93356 0.87584 0.94751
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 0.90 8.93 59.85 0.53 1.44 16
2 N -0.48 -6.90 3.02 -122.80 -0.37 -7.28 16
3 C 0.51 7.82 7.43 -15.17 -0.11 7.71 16
4 O -0.56 -10.06 16.39 4.95 0.08 -9.98 16
5 C -0.23 -2.77 10.00 -39.21 -0.39 -3.17 16
6 C -0.02 -0.22 10.08 -39.53 -0.40 -0.62 16
7 C -0.18 -2.26 9.50 -39.47 -0.38 -2.64 16
8 C 0.12 1.75 6.63 -82.33 -0.55 1.20 16
9 C 0.55 8.48 7.13 -12.31 -0.09 8.39 16
10 O -0.54 -8.69 9.43 5.33 0.05 -8.64 16
11 N -0.66 -10.74 3.97 -48.42 -0.19 -10.93 16
12 C 0.16 2.67 0.45 -131.70 -0.06 2.61 16
13 C 0.07 1.04 5.68 37.16 0.21 1.25 16
14 O -0.56 -8.86 12.98 -35.23 -0.46 -9.31 16
15 C -0.12 -1.95 4.52 -26.69 -0.12 -2.07 16
16 C -0.13 -2.10 5.93 -26.61 -0.16 -2.26 16
17 C 0.14 2.70 6.52 -3.71 -0.02 2.67 16
18 N -0.59 -13.02 2.85 -172.32 -0.49 -13.51 16
19 C -0.26 -6.40 9.58 -15.06 -0.14 -6.55 16
20 H 0.07 1.58 7.85 -52.48 -0.41 1.17 16
21 C 0.01 0.26 5.04 -17.43 -0.09 0.17 16
22 N -0.90 -23.91 11.09 55.49 0.62 -23.29 16
23 Si 0.90 19.85 29.57 -169.99 -5.03 14.82 16
24 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16
25 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16
26 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16
27 C 0.18 3.71 3.75 -3.72 -0.01 3.70 16
28 H 0.09 1.17 6.86 -51.93 -0.36 0.82 16
29 H 0.09 1.15 7.20 -51.92 -0.37 0.78 16
30 H 0.09 1.13 7.24 -51.93 -0.38 0.75 16
31 H 0.15 1.55 8.06 -52.48 -0.42 1.12 16
32 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16
33 H 0.15 1.83 6.30 -52.49 -0.33 1.50 16
34 H 0.41 6.92 6.42 -40.82 -0.26 6.66 16
35 H 0.06 0.92 6.16 -51.93 -0.32 0.60 16
36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16
37 H 0.37 4.10 9.12 45.56 0.42 4.51 16
38 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16
39 H 0.07 1.16 6.25 -51.93 -0.32 0.84 16
40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16
41 H 0.06 0.95 7.53 -51.93 -0.39 0.56 16
42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16
43 H 0.05 1.03 7.93 -51.93 -0.41 0.62 16
44 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16
45 H 0.11 2.58 5.88 -51.93 -0.31 2.27 16
46 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16
LS Contribution 361.67 15.07 5.45 5.45
Total: -1.00 -30.09 361.67 -7.66 -37.75
By element:
Atomic # 1 Polarization: 18.63 SS G_CDS: -5.54 Total: 13.09 kcal
Atomic # 6 Polarization: 13.61 SS G_CDS: -1.77 Total: 11.84 kcal
Atomic # 7 Polarization: -54.58 SS G_CDS: -0.44 Total: -55.02 kcal
Atomic # 8 Polarization: -27.61 SS G_CDS: -0.33 Total: -27.93 kcal
Atomic # 14 Polarization: 19.85 SS G_CDS: -5.03 Total: 14.82 kcal
Total LS contribution 5.45 Total: 5.45 kcal
Total: -30.09 -7.66 -37.75 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001271982884.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.469 kcal
(2) G-P(sol) polarization free energy of solvation -30.088 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.557 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.657 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal
(6) G-S(sol) free energy of system = (1) + (5) -49.215 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.03 seconds