Wall clock time and date at job start Tue Mar 31 2020 18:16:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46501 * 1
3 3 C 1.34666 * 119.70197 * 2 1
4 4 O 1.21965 * 119.95661 * 0.02562 * 3 2 1
5 5 C 1.41238 * 120.08578 * 180.02562 * 3 2 1
6 6 C 1.36107 * 119.50961 * 359.97438 * 5 3 2
7 7 C 1.40402 * 119.41767 * 359.97438 * 6 5 3
8 8 C 1.36295 * 119.90380 * 0.26210 * 7 6 5
9 9 C 1.47882 * 119.75546 * 179.74443 * 8 7 6
10 10 O 1.21539 * 120.00371 * 179.97438 * 9 8 7
11 11 N 1.34780 * 120.00481 * 359.97438 * 9 8 7
12 12 C 1.46499 * 120.00553 * 174.85358 * 11 9 8
13 13 C 1.53002 * 109.49621 * 302.89315 * 12 11 9
14 14 O 1.42904 * 109.47319 * 300.68009 * 13 12 11
15 15 C 1.53036 * 109.49756 * 62.95424 * 12 11 9
16 16 C 1.53048 * 109.53635 * 58.58957 * 15 12 11
17 17 C 1.53185 * 109.31240 * 61.36141 * 16 15 12
18 18 N 1.46932 * 108.77851 * 305.36960 * 17 16 15
19 19 C 1.36935 * 120.62752 * 233.60990 * 18 17 16
20 20 H 1.08005 * 120.00406 * 31.62847 * 19 18 17
21 21 C 1.38816 * 120.00041 * 211.63132 * 19 18 17
22 22 N 1.31620 * 119.99503 * 10.94445 * 21 19 18
23 23 Si 1.86795 * 120.00322 * 190.94893 * 21 19 18
24 24 H 1.48500 * 109.47121 * 89.99595 * 23 21 19
25 25 H 1.48505 * 109.47103 * 210.00017 * 23 21 19
26 26 H 1.48502 * 109.46897 * 329.99524 * 23 21 19
27 27 C 1.46918 * 118.73891 * 53.60594 * 18 17 16
28 28 H 1.08994 * 109.47081 * 359.97438 * 1 2 3
29 29 H 1.09009 * 109.47261 * 120.00094 * 1 2 3
30 30 H 1.09000 * 109.47210 * 239.99674 * 1 2 3
31 31 H 1.08004 * 120.24720 * 179.97438 * 5 3 2
32 32 H 1.08001 * 120.29296 * 180.02562 * 6 5 3
33 33 H 1.07998 * 120.04876 * 179.97438 * 7 6 5
34 34 H 0.97000 * 119.99595 * 354.86216 * 11 9 8
35 35 H 1.08996 * 109.47237 * 60.67289 * 13 12 11
36 36 H 1.08993 * 109.47174 * 180.67388 * 13 12 11
37 37 H 0.96693 * 114.00395 * 180.02562 * 14 13 12
38 38 H 1.08996 * 109.46086 * 178.60518 * 15 12 11
39 39 H 1.09001 * 109.46289 * 298.57211 * 15 12 11
40 40 H 1.08996 * 109.49503 * 181.31730 * 16 15 12
41 41 H 1.08998 * 109.49227 * 301.41471 * 16 15 12
42 42 H 1.09003 * 109.58418 * 65.15293 * 17 16 15
43 43 H 1.08997 * 109.58731 * 185.57726 * 17 16 15
44 44 H 0.97006 * 119.99903 * 179.97438 * 22 21 19
45 45 H 1.08999 * 109.58879 * 186.60782 * 27 18 17
46 46 H 1.09002 * 109.58952 * 66.17994 * 27 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1323 1.1697 0.0000
4 8 1.5162 2.2223 0.0005
5 6 3.5446 1.1792 -0.0005
6 6 4.2230 -0.0008 -0.0005
7 6 3.5064 -1.2082 0.0006
8 6 2.1436 -1.1895 -0.0038
9 6 1.3921 -2.4632 -0.0084
10 8 0.1768 -2.4518 -0.0118
11 7 2.0549 -3.6368 -0.0087
12 6 1.3146 -4.8962 0.1006
13 6 0.4744 -4.8854 1.3792
14 8 1.3314 -4.7220 2.5110
15 6 0.3959 -5.0557 -1.1129
16 6 1.2322 -5.0329 -2.3945
17 6 2.2181 -6.2052 -2.3770
18 7 3.0079 -6.1406 -1.1397
19 6 4.3765 -6.1486 -1.1845
20 1 4.8920 -5.7055 -2.0238
21 6 5.1015 -6.7263 -0.1512
22 7 4.4864 -7.4516 0.7587
23 14 6.9496 -6.4741 -0.0520
24 1 7.2412 -5.2614 0.7538
25 1 7.5770 -7.6575 0.5895
26 1 7.5000 -6.3032 -1.4207
27 6 2.3015 -6.0671 0.1463
28 1 -0.3633 1.0276 0.0005
29 1 -0.3634 -0.5139 -0.8900
30 1 -0.3633 -0.5139 0.8899
31 1 4.0824 2.1158 -0.0010
32 1 5.3029 -0.0083 -0.0005
33 1 4.0343 -2.1503 0.0002
34 1 3.0221 -3.6474 -0.0812
35 1 -0.2365 -4.0601 1.3399
36 1 -0.0669 -5.8274 1.4663
37 1 0.8656 -4.7065 3.3582
38 1 -0.1361 -6.0044 -1.0434
39 1 -0.3233 -4.2369 -1.1340
40 1 0.5750 -5.1230 -3.2593
41 1 1.7838 -4.0946 -2.4522
42 1 1.6681 -7.1457 -2.4106
43 1 2.8823 -6.1370 -3.2385
44 1 4.9930 -7.8557 1.4806
45 1 3.0206 -5.9076 0.9498
46 1 1.7582 -6.9962 0.3185
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001271982884.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:16:41
Heat of formation + Delta-G solvation = -70.315518 kcal
Electronic energy + Delta-G solvation = -31203.988823 eV
Core-core repulsion = 27094.485980 eV
Total energy + Delta-G solvation = -4109.502844 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-42.67922 -41.26880 -39.15394 -37.80998 -37.32784 -35.94118 -35.15520 -34.30350
-32.48016 -31.66394 -30.43038 -28.64728 -27.29925 -26.62613 -25.95144 -23.97575
-23.72630 -22.75939 -21.87755 -20.22336 -19.29149 -18.64933 -18.39300 -18.15580
-17.89609 -17.38985 -17.00284 -16.72736 -16.29278 -16.05472 -15.72973 -15.59554
-15.42768 -15.07951 -14.73125 -14.70801 -14.29702 -14.12128 -13.94907 -13.75985
-13.49778 -13.44544 -13.23595 -12.96118 -12.82509 -12.78770 -12.70145 -12.51448
-12.18866 -11.92684 -11.65498 -11.51842 -11.38501 -11.16875 -11.13577 -11.01176
-10.50740 -10.44943 -9.95931 -9.15696 -8.57681 -7.80277 -5.31883 -0.62774
0.58068 1.35495 1.53878 1.57020 1.63984 1.77264 2.12232 2.56459
2.59004 3.31004 3.33137 3.38223 3.55015 3.69429 3.86279 4.08339
4.10464 4.19515 4.21352 4.28067 4.37343 4.41591 4.44836 4.49941
4.61468 4.73928 4.80599 4.85600 4.87177 4.94316 4.97105 5.00710
5.12853 5.17338 5.23908 5.33376 5.36374 5.49507 5.61411 5.72225
5.80586 5.89053 6.46377 6.54449 6.81475 6.93511 7.05528 7.21495
7.89077 8.43985 9.24976
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.011826 B = 0.004704 C = 0.003950
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2367.146362 B = 5950.536980 C = 7087.052426
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.072 3.928
2 N -0.478 5.478
3 C 0.498 3.502
4 O -0.597 6.597
5 C -0.227 4.227
6 C -0.006 4.006
7 C -0.167 4.167
8 C 0.102 3.898
9 C 0.556 3.444
10 O -0.548 6.548
11 N -0.665 5.665
12 C 0.162 3.838
13 C 0.072 3.928
14 O -0.579 6.579
15 C -0.116 4.116
16 C -0.117 4.117
17 C 0.139 3.861
18 N -0.604 5.604
19 C -0.261 4.261
20 H 0.070 0.930
21 C -0.038 4.038
22 N -0.930 5.930
23 Si 0.960 3.040
24 H -0.277 1.277
25 H -0.305 1.305
26 H -0.271 1.271
27 C 0.192 3.808
28 H 0.086 0.914
29 H 0.086 0.914
30 H 0.085 0.915
31 H 0.172 0.828
32 H 0.184 0.816
33 H 0.162 0.838
34 H 0.409 0.591
35 H 0.064 0.936
36 H 0.056 0.944
37 H 0.389 0.611
38 H 0.069 0.931
39 H 0.077 0.923
40 H 0.076 0.924
41 H 0.052 0.948
42 H 0.014 0.986
43 H 0.055 0.945
44 H 0.249 0.751
45 H 0.074 0.926
46 H 0.007 0.993
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.386 9.515 -0.510 10.489
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 N -0.189 5.189
3 C 0.302 3.698
4 O -0.483 6.483
5 C -0.249 4.249
6 C -0.028 4.028
7 C -0.192 4.192
8 C -0.008 4.008
9 C 0.342 3.658
10 O -0.429 6.429
11 N -0.315 5.315
12 C 0.074 3.926
13 C -0.007 4.007
14 O -0.385 6.385
15 C -0.154 4.154
16 C -0.156 4.156
17 C 0.013 3.987
18 N -0.327 5.327
19 C -0.391 4.391
20 H 0.087 0.913
21 C -0.234 4.234
22 N -0.575 5.575
23 Si 0.789 3.211
24 H -0.204 1.204
25 H -0.232 1.232
26 H -0.195 1.195
27 C 0.066 3.934
28 H 0.104 0.896
29 H 0.105 0.895
30 H 0.103 0.897
31 H 0.189 0.811
32 H 0.201 0.799
33 H 0.179 0.821
34 H 0.246 0.754
35 H 0.082 0.918
36 H 0.074 0.926
37 H 0.238 0.762
38 H 0.087 0.913
39 H 0.096 0.904
40 H 0.095 0.905
41 H 0.070 0.930
42 H 0.032 0.968
43 H 0.073 0.927
44 H 0.058 0.942
45 H 0.092 0.908
46 H 0.025 0.975
Dipole moment (debyes) X Y Z Total
from point charges -5.152 10.035 -0.855 11.312
hybrid contribution 0.809 -0.528 0.703 1.195
sum -4.344 9.506 -0.152 10.453
Atomic orbital electron populations
1.22213 0.76052 1.03752 1.04851 1.45390 1.10187 1.05240 1.58117
1.17850 0.90527 0.82107 0.79359 1.90886 1.70876 1.30325 1.56246
1.22537 0.91125 1.01819 1.09409 1.21803 1.02966 0.89793 0.88200
1.21369 0.90809 1.01718 1.05276 1.20229 0.93076 0.86213 1.01264
1.17873 0.87029 0.83363 0.77563 1.90697 1.13357 1.87285 1.51559
1.45676 1.11375 1.04051 1.70411 1.21171 0.93124 0.84555 0.93741
1.22498 0.92142 1.00558 0.85476 1.86527 1.37987 1.96684 1.17342
1.21733 0.97575 1.02437 0.93690 1.21799 0.97774 0.99006 0.97018
1.21099 0.93167 0.95093 0.89297 1.44231 1.01961 1.85612 1.00882
1.19427 0.82295 1.30634 1.06738 0.91254 1.25821 1.01352 0.96932
0.99336 1.70114 1.35936 1.35352 1.16054 0.85388 0.81097 0.76770
0.77877 1.20358 1.23208 1.19543 1.20642 0.92627 0.90847 0.89321
0.89588 0.89530 0.89694 0.81100 0.79911 0.82076 0.75357 0.91793
0.92575 0.76245 0.91275 0.90431 0.90549 0.92963 0.96843 0.92651
0.94225 0.90762 0.97509
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.91 8.93 127.77 1.14 3.05 16
2 N -0.48 -13.42 3.02 -660.61 -1.99 -15.41 16
3 C 0.50 14.67 7.43 85.00 0.63 15.30 16
4 O -0.60 -21.42 16.39 -5.20 -0.09 -21.50 16
5 C -0.23 -4.94 10.00 22.51 0.23 -4.72 16
6 C -0.01 -0.11 10.08 22.30 0.22 0.11 16
7 C -0.17 -3.70 9.50 22.34 0.21 -3.49 16
8 C 0.10 2.73 6.63 40.45 0.27 2.99 16
9 C 0.56 16.37 7.13 86.80 0.62 16.99 16
10 O -0.55 -16.98 9.43 -3.84 -0.04 -17.01 16
11 N -0.67 -20.84 3.97 -425.38 -1.69 -22.53 16
12 C 0.16 5.42 0.45 3.68 0.00 5.42 16
13 C 0.07 2.20 5.68 71.98 0.41 2.61 16
14 O -0.58 -17.99 12.98 -148.98 -1.93 -19.92 16
15 C -0.12 -3.56 4.52 30.62 0.14 -3.42 16
16 C -0.12 -3.59 5.93 30.67 0.18 -3.41 16
17 C 0.14 5.16 6.52 86.36 0.56 5.72 16
18 N -0.60 -26.47 2.85 -699.11 -1.99 -28.46 16
19 C -0.26 -12.54 9.58 84.03 0.80 -11.74 16
20 H 0.07 3.24 7.85 -2.91 -0.02 3.22 16
21 C -0.04 -1.90 5.04 84.86 0.43 -1.47 16
22 N -0.93 -50.48 11.09 21.65 0.24 -50.24 16
23 Si 0.96 40.51 29.57 68.60 2.03 42.54 16
24 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16
25 H -0.30 -13.51 7.11 99.48 0.71 -12.80 16
26 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16
27 C 0.19 8.19 3.75 86.36 0.32 8.51 16
28 H 0.09 2.30 6.86 -2.39 -0.02 2.28 16
29 H 0.09 2.26 7.20 -2.38 -0.02 2.24 16
30 H 0.08 2.22 7.24 -2.39 -0.02 2.20 16
31 H 0.17 2.98 8.06 -2.91 -0.02 2.95 16
32 H 0.18 1.83 8.06 -2.91 -0.02 1.80 16
33 H 0.16 3.39 6.30 -2.91 -0.02 3.37 16
34 H 0.41 13.31 6.42 -92.71 -0.59 12.71 16
35 H 0.06 1.90 6.16 -2.39 -0.01 1.89 16
36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16
37 H 0.39 8.28 9.12 -74.06 -0.68 7.60 16
38 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16
39 H 0.08 2.34 6.25 -2.39 -0.01 2.33 16
40 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16
41 H 0.05 1.66 7.53 -2.39 -0.02 1.64 16
42 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16
43 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16
44 H 0.25 13.34 8.31 -92.70 -0.77 12.57 16
45 H 0.07 3.68 5.88 -2.39 -0.01 3.67 16
46 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16
Total: -1.00 -65.22 361.67 0.47 -64.75
By element:
Atomic # 1 Polarization: 35.57 SS G_CDS: -0.24 Total: 35.33 kcal
Atomic # 6 Polarization: 26.30 SS G_CDS: 6.17 Total: 32.47 kcal
Atomic # 7 Polarization: -111.21 SS G_CDS: -5.43 Total: -116.64 kcal
Atomic # 8 Polarization: -56.38 SS G_CDS: -2.06 Total: -58.44 kcal
Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal
Total: -65.22 0.47 -64.75 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001271982884.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.570 kcal
(2) G-P(sol) polarization free energy of solvation -65.220 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.790 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.474 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.746 kcal
(6) G-S(sol) free energy of system = (1) + (5) -70.316 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds