Wall clock time and date at job start Tue Mar 31 2020 18:40:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 120.00454 * 2 1 4 4 H 1.08000 * 120.00246 * 204.16987 * 3 2 1 5 5 C 1.38812 * 119.99632 * 24.17428 * 3 2 1 6 6 N 1.31614 * 120.00458 * 9.22987 * 5 3 2 7 7 Si 1.86802 * 119.99658 * 189.23859 * 5 3 2 8 8 H 1.48495 * 109.47309 * 89.99615 * 7 5 3 9 9 H 1.48501 * 109.47103 * 209.99765 * 7 5 3 10 10 H 1.48498 * 109.47072 * 329.99273 * 7 5 3 11 11 C 1.46510 * 119.99644 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47196 * 270.00301 * 11 2 1 13 13 N 1.46501 * 109.47199 * 180.02562 * 12 11 2 14 14 C 1.46500 * 119.99629 * 270.00005 * 13 12 11 15 15 C 1.34777 * 120.00072 * 89.99894 * 13 12 11 16 16 O 1.21589 * 119.99978 * 4.42695 * 15 13 12 17 17 C 1.47528 * 119.99798 * 184.42874 * 15 13 12 18 18 C 1.39713 * 120.19503 * 311.09095 * 17 15 13 19 19 C 1.37790 * 119.90894 * 180.02562 * 18 17 15 20 20 C 1.38543 * 120.30089 * 0.02562 * 19 18 17 21 21 C 1.38057 * 120.39032 * 359.97438 * 20 19 18 22 22 C 1.38706 * 120.08436 * 0.02562 * 21 20 19 23 23 O 1.35658 * 120.14609 * 180.02562 * 22 21 20 24 24 C 1.42899 * 117.00189 * 359.97308 * 23 22 21 25 25 C 1.50697 * 109.46936 * 179.97438 * 24 23 22 26 26 N 1.34776 * 120.00043 * 179.97438 * 25 24 23 27 27 O 1.21281 * 119.99843 * 0.02562 * 25 24 23 28 28 H 1.09000 * 109.47121 * 275.07930 * 1 2 3 29 29 H 1.09007 * 109.46751 * 35.07762 * 1 2 3 30 30 H 1.08992 * 109.47266 * 155.07584 * 1 2 3 31 31 H 0.96994 * 120.00427 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.46931 * 149.99966 * 11 2 1 33 33 H 1.09002 * 109.46843 * 30.00185 * 11 2 1 34 34 H 1.08996 * 109.47313 * 59.99451 * 12 11 2 35 35 H 1.09009 * 109.46843 * 299.99975 * 12 11 2 36 36 H 1.09004 * 109.47016 * 272.97327 * 14 13 12 37 37 H 1.08998 * 109.47237 * 32.97352 * 14 13 12 38 38 H 1.08998 * 109.47000 * 152.97607 * 14 13 12 39 39 H 1.08003 * 120.04236 * 0.02562 * 18 17 15 40 40 H 1.07999 * 119.84427 * 180.02562 * 19 18 17 41 41 H 1.07999 * 119.80342 * 179.71805 * 20 19 18 42 42 H 1.08006 * 119.95494 * 180.02562 * 21 20 19 43 43 H 1.09003 * 109.46775 * 300.00029 * 24 23 22 44 44 H 1.08998 * 109.47150 * 59.99860 * 24 23 22 45 45 H 0.97005 * 119.99848 * 0.02562 * 26 25 24 46 46 H 0.97002 * 120.00051 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1587 1.2268 -0.3829 5 6 1.5470 2.3353 0.4923 6 7 0.3945 2.2557 1.1228 7 14 2.3716 3.9952 0.2597 8 1 1.9141 4.6007 -1.0167 9 1 2.0113 4.8896 1.3890 10 1 3.8452 3.8149 0.2218 11 6 2.1974 -1.2689 0.0006 12 6 2.4523 -1.7099 1.4432 13 7 3.1853 -2.9784 1.4438 14 6 2.4532 -4.2474 1.4441 15 6 4.5331 -2.9779 1.4440 16 8 5.1406 -1.9279 1.5250 17 6 5.2711 -4.2516 1.3459 18 6 4.9353 -5.3240 2.1760 19 6 5.6289 -6.5107 2.0798 20 6 6.6591 -6.6459 1.1634 21 6 7.0013 -5.5942 0.3371 22 6 6.3139 -4.3924 0.4203 23 8 6.6487 -3.3583 -0.3914 24 6 7.7216 -3.5756 -1.3100 25 6 7.9483 -2.3266 -2.1220 26 7 8.9174 -2.2981 -3.0582 27 8 7.2594 -1.3466 -1.9324 28 1 -0.3633 0.0910 1.0236 29 1 -0.3633 0.8411 -0.5906 30 1 -0.3633 -0.9319 -0.4330 31 1 -0.0265 3.0588 1.4672 32 1 3.1498 -1.1388 -0.5133 33 1 1.6083 -2.0287 -0.5130 34 1 1.5000 -1.8399 1.9571 35 1 3.0415 -0.9500 1.9568 36 1 2.2253 -4.5351 2.4705 37 1 1.5250 -4.1314 0.8846 38 1 3.0646 -5.0197 0.9775 39 1 4.1332 -5.2230 2.8921 40 1 5.3682 -7.3392 2.7216 41 1 7.2004 -7.5782 1.0979 42 1 7.8054 -5.7074 -0.3751 43 1 8.6289 -3.8201 -0.7576 44 1 7.4682 -4.4005 -1.9759 45 1 9.4687 -3.0818 -3.2096 46 1 9.0631 -1.4942 -3.5812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272062084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:43 Heat of formation + Delta-G solvation = -37.926712 kcal Electronic energy + Delta-G solvation = -29417.228188 eV Core-core repulsion = 25309.129828 eV Total energy + Delta-G solvation = -4108.098360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.84330 -39.65632 -38.67395 -37.33471 -35.84219 -34.68089 -33.95829 -31.92032 -30.99382 -30.49414 -28.66157 -28.12634 -26.35723 -25.70241 -24.23807 -23.01063 -22.37859 -20.95777 -20.44691 -19.43934 -18.30865 -17.83917 -17.04961 -16.62411 -16.59264 -16.50962 -16.12950 -15.51688 -15.17882 -14.94700 -14.51610 -14.45623 -14.29502 -13.96124 -13.56658 -13.29053 -12.95116 -12.92043 -12.84417 -12.58618 -12.31836 -12.18968 -11.89803 -11.73584 -11.41782 -11.31817 -11.13603 -10.71778 -10.68844 -10.36750 -10.12021 -9.98153 -9.96514 -9.78077 -9.60197 -9.43552 -9.12809 -8.46811 -8.43157 -8.17645 -6.56756 -5.56133 -3.02547 0.84374 1.15445 2.37922 2.44088 3.03403 3.34318 3.53594 3.55106 3.57991 3.64491 3.68729 4.35426 4.52226 4.56904 4.63010 4.68068 4.68911 4.76264 4.99239 5.07485 5.25397 5.32459 5.51730 5.58684 5.62303 5.80118 5.84863 5.89003 6.01452 6.03923 6.18575 6.40920 6.42102 6.45255 6.50779 6.82054 6.85603 6.92752 6.96367 7.14616 7.25271 7.50284 7.84712 7.85727 8.01967 8.03043 8.57927 8.66702 9.42417 10.03307 10.51913 11.49167 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010356 B = 0.003731 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.046120 B = 7502.632756 C = 9580.532054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.599 5.599 3 C -0.246 4.246 4 H 0.071 0.929 5 C 0.001 3.999 6 N -0.914 5.914 7 Si 0.904 3.096 8 H -0.289 1.289 9 H -0.291 1.291 10 H -0.277 1.277 11 C 0.144 3.856 12 C 0.096 3.904 13 N -0.609 5.609 14 C 0.076 3.924 15 C 0.554 3.446 16 O -0.508 6.508 17 C -0.149 4.149 18 C -0.051 4.051 19 C -0.164 4.164 20 C -0.064 4.064 21 C -0.219 4.219 22 C 0.173 3.827 23 O -0.267 6.267 24 C 0.038 3.962 25 C 0.511 3.489 26 N -0.855 5.855 27 O -0.494 6.494 28 H 0.030 0.970 29 H 0.043 0.957 30 H -0.005 1.005 31 H 0.250 0.750 32 H 0.048 0.952 33 H 0.033 0.967 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.128 0.872 42 H 0.132 0.868 43 H 0.094 0.906 44 H 0.093 0.907 45 H 0.400 0.600 46 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.139 -24.818 -3.650 29.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.322 5.322 3 C -0.376 4.376 4 H 0.088 0.912 5 C -0.196 4.196 6 N -0.560 5.560 7 Si 0.734 3.266 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.203 1.203 11 C 0.015 3.985 12 C -0.028 4.028 13 N -0.344 5.344 14 C -0.068 4.068 15 C 0.340 3.660 16 O -0.383 6.383 17 C -0.153 4.153 18 C -0.069 4.069 19 C -0.183 4.183 20 C -0.082 4.082 21 C -0.238 4.238 22 C 0.125 3.875 23 O -0.178 6.178 24 C -0.041 4.041 25 C 0.293 3.707 26 N -0.422 5.422 27 O -0.366 6.366 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.013 0.987 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.150 0.850 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.228 0.772 46 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 14.668 -23.299 -3.285 27.727 hybrid contribution 0.866 0.510 -0.348 1.064 sum 15.534 -22.788 -3.633 27.817 Atomic orbital electron populations 1.20820 0.82521 0.95301 0.99398 1.43950 1.01858 1.00652 1.85726 1.19328 0.98944 0.85556 1.33723 0.91172 1.25045 0.97678 0.98608 0.98318 1.70047 1.17952 1.27193 1.40799 0.86231 0.79331 0.83989 0.77014 1.21607 1.21782 1.20263 1.21123 0.96168 0.87998 0.93187 1.22590 0.95261 0.83130 1.01847 1.47954 1.05221 1.07900 1.73293 1.21915 0.97570 0.86148 1.01157 1.18003 0.82137 0.88166 0.77691 1.90874 1.67539 1.32286 1.47585 1.19413 0.99094 0.96421 1.00332 1.21279 0.98093 0.91088 0.96469 1.20986 0.98100 0.98059 1.01111 1.21035 0.95715 0.97819 0.93619 1.21165 1.03953 0.93524 1.05144 1.18955 0.92398 0.86510 0.89598 1.86341 1.49397 1.35209 1.46833 1.22488 0.91683 0.97195 0.92757 1.20032 0.80700 0.89281 0.80640 1.43638 1.37770 1.19848 1.40974 1.90954 1.44913 1.35360 1.65340 0.95187 0.93840 0.98682 0.93954 0.93318 0.94846 0.91466 0.89551 0.92969 0.91115 0.91154 0.84498 0.85295 0.85444 0.85048 0.88811 0.88878 0.77236 0.75929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.29 9.01 59.85 0.54 4.83 16 2 N -0.60 -16.60 2.92 -181.12 -0.53 -17.13 16 3 C -0.25 -7.52 9.66 -15.06 -0.15 -7.66 16 4 H 0.07 2.21 7.84 -52.49 -0.41 1.80 16 5 C 0.00 0.03 5.17 -17.43 -0.09 -0.06 16 6 N -0.91 -28.17 10.58 55.49 0.59 -27.58 16 7 Si 0.90 23.97 29.56 -169.99 -5.03 18.95 16 8 H -0.29 -7.54 7.11 56.52 0.40 -7.13 16 9 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 10 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 11 C 0.14 3.42 6.03 -4.04 -0.02 3.39 16 12 C 0.10 2.07 5.78 -4.04 -0.02 2.05 16 13 N -0.61 -10.85 2.87 -182.81 -0.53 -11.38 16 14 C 0.08 0.93 9.09 59.85 0.54 1.48 16 15 C 0.55 10.75 6.95 -12.47 -0.09 10.66 16 16 O -0.51 -12.54 16.08 -4.11 -0.07 -12.61 16 17 C -0.15 -2.20 4.91 -104.85 -0.51 -2.72 16 18 C -0.05 -0.55 7.60 -39.19 -0.30 -0.84 16 19 C -0.16 -1.35 10.02 -39.63 -0.40 -1.74 16 20 C -0.06 -0.48 10.03 -39.54 -0.40 -0.88 16 21 C -0.22 -1.99 9.03 -39.47 -0.36 -2.35 16 22 C 0.17 2.36 6.67 -38.70 -0.26 2.10 16 23 O -0.27 -4.24 8.71 -44.67 -0.39 -4.63 16 24 C 0.04 0.37 5.22 36.00 0.19 0.56 16 25 C 0.51 6.30 8.18 -10.99 -0.09 6.21 16 26 N -0.85 -5.68 8.87 31.22 0.28 -5.40 16 27 O -0.49 -9.71 17.34 -14.36 -0.25 -9.96 16 28 H 0.03 0.83 7.33 -51.93 -0.38 0.45 16 29 H 0.04 1.21 7.31 -51.92 -0.38 0.83 16 30 H -0.01 -0.12 7.83 -51.93 -0.41 -0.53 16 31 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 32 H 0.05 1.27 8.04 -51.93 -0.42 0.86 16 33 H 0.03 0.71 7.86 -51.93 -0.41 0.30 16 34 H 0.07 1.38 8.07 -51.93 -0.42 0.96 16 35 H 0.09 2.21 7.36 -51.92 -0.38 1.83 16 36 H 0.05 0.53 7.55 -51.93 -0.39 0.14 16 37 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 38 H 0.07 0.75 5.67 -51.93 -0.29 0.46 16 39 H 0.14 1.27 6.55 -52.48 -0.34 0.93 16 40 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 41 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 42 H 0.13 0.76 6.30 -52.48 -0.33 0.43 16 43 H 0.09 0.61 7.66 -51.93 -0.40 0.21 16 44 H 0.09 0.58 7.66 -51.93 -0.40 0.18 16 45 H 0.40 0.94 8.83 -40.82 -0.36 0.58 16 46 H 0.41 2.58 8.93 -40.82 -0.36 2.22 16 LS Contribution 384.95 15.07 5.80 5.80 Total: -1.00 -42.64 384.95 -8.02 -50.66 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -6.49 Total: -1.74 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: -1.41 Total: 15.03 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.19 Total: -61.49 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.70 Total: -27.20 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.03 Total: 18.95 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -42.64 -8.02 -50.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272062084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.732 kcal (2) G-P(sol) polarization free energy of solvation -42.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds