Wall clock time and date at job start Tue Mar 31 2020 18:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 120.00454 * 2 1 4 4 H 1.08000 * 120.00246 * 204.16987 * 3 2 1 5 5 C 1.38812 * 119.99632 * 24.17428 * 3 2 1 6 6 N 1.31614 * 120.00458 * 9.22987 * 5 3 2 7 7 Si 1.86802 * 119.99658 * 189.23859 * 5 3 2 8 8 H 1.48495 * 109.47309 * 89.99615 * 7 5 3 9 9 H 1.48501 * 109.47103 * 209.99765 * 7 5 3 10 10 H 1.48498 * 109.47072 * 329.99273 * 7 5 3 11 11 C 1.46510 * 119.99644 * 179.97438 * 2 1 3 12 12 C 1.52996 * 109.47196 * 270.00301 * 11 2 1 13 13 N 1.46501 * 109.47199 * 180.02562 * 12 11 2 14 14 C 1.46500 * 119.99629 * 270.00005 * 13 12 11 15 15 C 1.34777 * 120.00072 * 89.99894 * 13 12 11 16 16 O 1.21589 * 119.99978 * 4.42695 * 15 13 12 17 17 C 1.47528 * 119.99798 * 184.42874 * 15 13 12 18 18 C 1.39713 * 120.19503 * 311.09095 * 17 15 13 19 19 C 1.37790 * 119.90894 * 180.02562 * 18 17 15 20 20 C 1.38543 * 120.30089 * 0.02562 * 19 18 17 21 21 C 1.38057 * 120.39032 * 359.97438 * 20 19 18 22 22 C 1.38706 * 120.08436 * 0.02562 * 21 20 19 23 23 O 1.35658 * 120.14609 * 180.02562 * 22 21 20 24 24 C 1.42899 * 117.00189 * 359.97308 * 23 22 21 25 25 C 1.50697 * 109.46936 * 179.97438 * 24 23 22 26 26 N 1.34776 * 120.00043 * 179.97438 * 25 24 23 27 27 O 1.21281 * 119.99843 * 0.02562 * 25 24 23 28 28 H 1.09000 * 109.47121 * 275.07930 * 1 2 3 29 29 H 1.09007 * 109.46751 * 35.07762 * 1 2 3 30 30 H 1.08992 * 109.47266 * 155.07584 * 1 2 3 31 31 H 0.96994 * 120.00427 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.46931 * 149.99966 * 11 2 1 33 33 H 1.09002 * 109.46843 * 30.00185 * 11 2 1 34 34 H 1.08996 * 109.47313 * 59.99451 * 12 11 2 35 35 H 1.09009 * 109.46843 * 299.99975 * 12 11 2 36 36 H 1.09004 * 109.47016 * 272.97327 * 14 13 12 37 37 H 1.08998 * 109.47237 * 32.97352 * 14 13 12 38 38 H 1.08998 * 109.47000 * 152.97607 * 14 13 12 39 39 H 1.08003 * 120.04236 * 0.02562 * 18 17 15 40 40 H 1.07999 * 119.84427 * 180.02562 * 19 18 17 41 41 H 1.07999 * 119.80342 * 179.71805 * 20 19 18 42 42 H 1.08006 * 119.95494 * 180.02562 * 21 20 19 43 43 H 1.09003 * 109.46775 * 300.00029 * 24 23 22 44 44 H 1.08998 * 109.47150 * 59.99860 * 24 23 22 45 45 H 0.97005 * 119.99848 * 0.02562 * 26 25 24 46 46 H 0.97002 * 120.00051 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1587 1.2268 -0.3829 5 6 1.5470 2.3353 0.4923 6 7 0.3945 2.2557 1.1228 7 14 2.3716 3.9952 0.2597 8 1 1.9141 4.6007 -1.0167 9 1 2.0113 4.8896 1.3890 10 1 3.8452 3.8149 0.2218 11 6 2.1974 -1.2689 0.0006 12 6 2.4523 -1.7099 1.4432 13 7 3.1853 -2.9784 1.4438 14 6 2.4532 -4.2474 1.4441 15 6 4.5331 -2.9779 1.4440 16 8 5.1406 -1.9279 1.5250 17 6 5.2711 -4.2516 1.3459 18 6 4.9353 -5.3240 2.1760 19 6 5.6289 -6.5107 2.0798 20 6 6.6591 -6.6459 1.1634 21 6 7.0013 -5.5942 0.3371 22 6 6.3139 -4.3924 0.4203 23 8 6.6487 -3.3583 -0.3914 24 6 7.7216 -3.5756 -1.3100 25 6 7.9483 -2.3266 -2.1220 26 7 8.9174 -2.2981 -3.0582 27 8 7.2594 -1.3466 -1.9324 28 1 -0.3633 0.0910 1.0236 29 1 -0.3633 0.8411 -0.5906 30 1 -0.3633 -0.9319 -0.4330 31 1 -0.0265 3.0588 1.4672 32 1 3.1498 -1.1388 -0.5133 33 1 1.6083 -2.0287 -0.5130 34 1 1.5000 -1.8399 1.9571 35 1 3.0415 -0.9500 1.9568 36 1 2.2253 -4.5351 2.4705 37 1 1.5250 -4.1314 0.8846 38 1 3.0646 -5.0197 0.9775 39 1 4.1332 -5.2230 2.8921 40 1 5.3682 -7.3392 2.7216 41 1 7.2004 -7.5782 1.0979 42 1 7.8054 -5.7074 -0.3751 43 1 8.6289 -3.8201 -0.7576 44 1 7.4682 -4.4005 -1.9759 45 1 9.4687 -3.0818 -3.2096 46 1 9.0631 -1.4942 -3.5812 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272062084.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:42 Heat of formation + Delta-G solvation = -71.884960 kcal Electronic energy + Delta-G solvation = -29418.700728 eV Core-core repulsion = 25309.129828 eV Total energy + Delta-G solvation = -4109.570900 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.80698 -40.79276 -39.85308 -38.21942 -37.81049 -36.38341 -34.85795 -33.63906 -32.44488 -31.24772 -30.14669 -29.15240 -27.96147 -27.60232 -25.80595 -24.10515 -23.44526 -22.40370 -21.77775 -20.70548 -19.21515 -18.89224 -18.68461 -18.15136 -17.47686 -17.40468 -17.37450 -16.98078 -16.65955 -16.09701 -15.86768 -15.57372 -15.39478 -15.34921 -15.15957 -14.76080 -14.68096 -14.21986 -13.93009 -13.91906 -13.71817 -13.54408 -13.17070 -13.01483 -12.83157 -12.78172 -12.67859 -12.46510 -12.16481 -12.13217 -12.07319 -12.06740 -11.66391 -11.18413 -10.85649 -10.80191 -10.73244 -9.94213 -9.77662 -9.24176 -8.79636 -7.90210 -5.39946 0.03622 0.42698 1.36976 1.39356 1.45894 1.50378 1.69289 1.73068 2.08387 2.46578 2.77564 2.79606 3.22903 3.52493 3.72643 3.75727 3.89153 3.99408 4.05308 4.07290 4.15157 4.27949 4.35007 4.40706 4.46563 4.53791 4.54480 4.70658 4.80869 4.85589 4.89690 4.97967 5.12505 5.22252 5.29519 5.37805 5.51074 5.53535 5.60656 5.69224 5.74336 5.82523 6.24112 6.28177 6.41283 6.50454 7.10783 7.23561 7.26524 7.79173 8.20695 9.12279 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010356 B = 0.003731 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.046120 B = 7502.632756 C = 9580.532054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.616 5.616 3 C -0.269 4.269 4 H 0.045 0.955 5 C -0.041 4.041 6 N -0.930 5.930 7 Si 0.965 3.035 8 H -0.276 1.276 9 H -0.281 1.281 10 H -0.286 1.286 11 C 0.152 3.848 12 C 0.115 3.885 13 N -0.609 5.609 14 C 0.071 3.929 15 C 0.546 3.454 16 O -0.584 6.584 17 C -0.188 4.188 18 C -0.052 4.052 19 C -0.154 4.154 20 C -0.048 4.048 21 C -0.210 4.210 22 C 0.147 3.853 23 O -0.324 6.324 24 C 0.033 3.967 25 C 0.504 3.496 26 N -0.823 5.823 27 O -0.587 6.587 28 H 0.012 0.988 29 H 0.018 0.982 30 H 0.037 0.963 31 H 0.252 0.748 32 H 0.010 0.990 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.033 0.967 36 H 0.081 0.919 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.146 0.854 40 H 0.166 0.834 41 H 0.173 0.827 42 H 0.169 0.831 43 H 0.131 0.869 44 H 0.136 0.864 45 H 0.425 0.575 46 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.321 -29.641 -3.877 34.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.340 5.340 3 C -0.399 4.399 4 H 0.062 0.938 5 C -0.237 4.237 6 N -0.577 5.577 7 Si 0.792 3.208 8 H -0.202 1.202 9 H -0.206 1.206 10 H -0.212 1.212 11 C 0.025 3.975 12 C -0.010 4.010 13 N -0.342 5.342 14 C -0.071 4.071 15 C 0.336 3.664 16 O -0.464 6.464 17 C -0.192 4.192 18 C -0.070 4.070 19 C -0.172 4.172 20 C -0.065 4.065 21 C -0.228 4.228 22 C 0.100 3.900 23 O -0.236 6.236 24 C -0.044 4.044 25 C 0.289 3.711 26 N -0.390 5.390 27 O -0.466 6.466 28 H 0.031 0.969 29 H 0.037 0.963 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.028 0.972 33 H 0.085 0.915 34 H 0.101 0.899 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.164 0.836 40 H 0.183 0.817 41 H 0.190 0.810 42 H 0.186 0.814 43 H 0.149 0.851 44 H 0.154 0.846 45 H 0.258 0.742 46 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 15.882 -28.250 -3.550 32.602 hybrid contribution 0.620 1.814 -0.332 1.946 sum 16.503 -26.435 -3.882 31.405 Atomic orbital electron populations 1.20629 0.81442 0.96347 0.98186 1.44116 1.02675 1.01002 1.86168 1.19331 0.98423 0.87568 1.34582 0.93755 1.25712 0.98382 1.01556 0.98041 1.70170 1.18585 1.27997 1.40912 0.85315 0.77755 0.80037 0.77645 1.20173 1.20638 1.21184 1.21066 0.94499 0.87476 0.94456 1.21940 0.95234 0.84282 0.99557 1.47977 1.05306 1.08312 1.72613 1.22259 0.97546 0.83789 1.03471 1.18946 0.82386 0.89355 0.75735 1.90816 1.69053 1.35510 1.50982 1.19272 1.00872 0.95200 1.03852 1.21427 0.98888 0.90933 0.95757 1.21435 0.97132 0.97559 1.01046 1.21627 0.94684 0.98688 0.91533 1.21571 1.03805 0.91706 1.05758 1.19323 0.93076 0.87761 0.89815 1.86278 1.51501 1.37525 1.48331 1.22860 0.92059 0.96593 0.92905 1.20749 0.80259 0.89164 0.80960 1.43420 1.35956 1.20971 1.38703 1.90922 1.48655 1.38633 1.68406 0.96919 0.96307 0.94502 0.93848 0.97171 0.91483 0.89888 0.94820 0.90093 0.90228 0.89038 0.83592 0.81675 0.81002 0.81388 0.85097 0.84639 0.74239 0.75610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.47 9.01 127.77 1.15 10.62 16 2 N -0.62 -35.72 2.92 -726.93 -2.12 -37.85 16 3 C -0.27 -17.44 9.66 84.03 0.81 -16.62 16 4 H 0.04 3.04 7.84 -2.91 -0.02 3.02 16 5 C -0.04 -2.59 5.17 84.86 0.44 -2.15 16 6 N -0.93 -58.84 10.58 21.65 0.23 -58.61 16 7 Si 0.96 51.14 29.56 68.60 2.03 53.17 16 8 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 9 H -0.28 -14.33 7.11 99.48 0.71 -13.62 16 10 H -0.29 -15.46 7.11 99.48 0.71 -14.75 16 11 C 0.15 7.66 6.03 86.38 0.52 8.18 16 12 C 0.12 5.32 5.78 86.38 0.50 5.82 16 13 N -0.61 -22.65 2.87 -850.56 -2.44 -25.10 16 14 C 0.07 1.63 9.09 127.77 1.16 2.79 16 15 C 0.55 22.80 6.95 86.69 0.60 23.40 16 16 O -0.58 -32.12 16.08 4.99 0.08 -32.04 16 17 C -0.19 -5.62 4.91 -20.01 -0.10 -5.71 16 18 C -0.05 -0.99 7.60 22.52 0.17 -0.82 16 19 C -0.15 -1.75 10.02 22.24 0.22 -1.52 16 20 C -0.05 -0.44 10.03 22.30 0.22 -0.22 16 21 C -0.21 -2.96 9.03 22.34 0.20 -2.76 16 22 C 0.15 3.93 6.67 22.84 0.15 4.08 16 23 O -0.32 -10.78 8.71 -64.89 -0.57 -11.35 16 24 C 0.03 0.62 5.22 71.24 0.37 0.99 16 25 C 0.50 12.94 8.18 87.66 0.72 13.65 16 26 N -0.82 -10.26 8.87 -173.54 -1.54 -11.80 16 27 O -0.59 -25.50 17.34 16.01 0.28 -25.22 16 28 H 0.01 0.71 7.33 -2.39 -0.02 0.69 16 29 H 0.02 1.05 7.31 -2.38 -0.02 1.03 16 30 H 0.04 1.62 7.83 -2.39 -0.02 1.60 16 31 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 32 H 0.01 0.57 8.04 -2.39 -0.02 0.55 16 33 H 0.07 2.87 7.86 -2.39 -0.02 2.86 16 34 H 0.08 3.51 8.07 -2.39 -0.02 3.49 16 35 H 0.03 1.89 7.36 -2.38 -0.02 1.87 16 36 H 0.08 1.43 7.55 -2.39 -0.02 1.41 16 37 H 0.08 1.71 8.09 -2.39 -0.02 1.69 16 38 H 0.09 1.77 5.67 -2.39 -0.01 1.75 16 39 H 0.15 2.37 6.55 -2.91 -0.02 2.35 16 40 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 41 H 0.17 0.18 8.06 -2.91 -0.02 0.16 16 42 H 0.17 0.99 6.30 -2.91 -0.02 0.97 16 43 H 0.13 1.34 7.66 -2.39 -0.02 1.33 16 44 H 0.14 1.24 7.66 -2.39 -0.02 1.22 16 45 H 0.42 0.88 8.83 -92.70 -0.82 0.06 16 46 H 0.41 5.14 8.93 -92.71 -0.83 4.31 16 Total: -1.00 -107.58 384.95 2.47 -105.11 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -0.62 Total: 3.94 kcal Atomic # 6 Polarization: 32.59 SS G_CDS: 7.15 Total: 39.74 kcal Atomic # 7 Polarization: -127.47 SS G_CDS: -5.88 Total: -133.35 kcal Atomic # 8 Polarization: -68.40 SS G_CDS: -0.21 Total: -68.61 kcal Atomic # 14 Polarization: 51.14 SS G_CDS: 2.03 Total: 53.17 kcal Total: -107.58 2.47 -105.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272062084.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.223 kcal (2) G-P(sol) polarization free energy of solvation -107.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds