Wall clock time and date at job start Tue Mar 31 2020 18:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36936 * 120.00507 * 2 1 4 4 H 1.07998 * 120.00510 * 202.34660 * 3 2 1 5 5 C 1.38809 * 119.99626 * 22.34582 * 3 2 1 6 6 N 1.31622 * 120.00391 * 11.34635 * 5 3 2 7 7 Si 1.86803 * 120.00052 * 191.34548 * 5 3 2 8 8 H 1.48501 * 109.47021 * 59.99966 * 7 5 3 9 9 H 1.48497 * 109.47280 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47064 * 300.00191 * 7 5 3 11 11 C 1.46504 * 119.99810 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46876 * 269.99954 * 11 2 1 13 13 N 1.46504 * 109.46876 * 179.97438 * 12 11 2 14 14 C 1.46505 * 119.99572 * 270.00003 * 13 12 11 15 15 C 1.34768 * 120.00085 * 89.99850 * 13 12 11 16 16 O 1.21278 * 120.00047 * 0.02562 * 15 13 12 17 17 C 1.50701 * 120.00017 * 179.97438 * 15 13 12 18 18 O 1.42904 * 109.47344 * 180.02562 * 17 15 13 19 19 C 1.35710 * 117.00397 * 180.02562 * 18 17 15 20 20 C 1.38987 * 119.91286 * 180.02562 * 19 18 17 21 21 C 1.37706 * 120.09016 * 180.02562 * 20 19 18 22 22 C 1.39738 * 119.90937 * 359.97438 * 21 20 19 23 23 C 1.47600 * 120.08744 * 180.02562 * 22 21 20 24 24 N 1.34774 * 119.99876 * 179.97438 * 23 22 21 25 25 O 1.21587 * 119.99960 * 359.97438 * 23 22 21 26 26 C 1.39740 * 119.82184 * 0.27220 * 22 21 20 27 27 C 1.37705 * 119.91030 * 359.47092 * 26 22 21 28 28 H 1.08997 * 109.47423 * 274.21142 * 1 2 3 29 29 H 1.09005 * 109.47216 * 34.20630 * 1 2 3 30 30 H 1.09005 * 109.47508 * 154.20671 * 1 2 3 31 31 H 0.96997 * 120.00566 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.47508 * 149.99905 * 11 2 1 33 33 H 1.09000 * 109.47033 * 29.99928 * 11 2 1 34 34 H 1.09003 * 109.47125 * 60.00166 * 12 11 2 35 35 H 1.08995 * 109.46841 * 299.99693 * 12 11 2 36 36 H 1.08997 * 109.46935 * 269.99824 * 14 13 12 37 37 H 1.09000 * 109.47588 * 30.00114 * 14 13 12 38 38 H 1.09003 * 109.46847 * 150.00507 * 14 13 12 39 39 H 1.08996 * 109.47163 * 60.00363 * 17 15 13 40 40 H 1.08998 * 109.46899 * 299.99884 * 17 15 13 41 41 H 1.08003 * 119.95680 * 0.02562 * 20 19 18 42 42 H 1.07996 * 120.04888 * 179.97438 * 21 20 19 43 43 H 0.96999 * 120.00014 * 0.02562 * 24 23 22 44 44 H 0.96999 * 119.99967 * 179.72115 * 24 23 22 45 45 H 1.08000 * 120.04039 * 179.73123 * 26 22 21 46 46 H 1.07997 * 119.95450 * 180.25382 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5339 2.3428 0.4571 6 7 0.3842 2.2691 1.0936 7 14 2.3368 4.0047 0.1688 8 1 2.4917 4.2331 -1.2904 9 1 1.4852 5.0734 0.7500 10 1 3.6722 4.0285 0.8180 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7111 1.4418 13 7 3.1844 -2.9802 1.4412 14 6 2.4512 -4.2485 1.4409 15 6 4.5320 -2.9808 1.4410 16 8 5.1389 -1.9308 1.4418 17 6 5.2849 -4.2863 1.4410 18 8 6.6900 -4.0258 1.4414 19 6 7.5163 -5.1024 1.4409 20 6 8.8939 -4.9188 1.4417 21 6 9.7357 -6.0087 1.4407 22 6 9.2030 -7.3005 1.4393 23 6 10.1016 -8.4715 1.4388 24 7 9.5859 -9.7166 1.4380 25 8 11.3070 -8.3127 1.4391 26 6 7.8173 -7.4808 1.4333 27 6 6.9823 -6.3858 1.4397 28 1 -0.3634 0.0755 1.0248 29 1 -0.3634 0.8499 -0.5777 30 1 -0.3634 -0.9253 -0.4472 31 1 -0.0460 3.0775 1.4133 32 1 3.1498 -1.1383 -0.5143 33 1 1.6083 -2.0282 -0.5147 34 1 1.5000 -1.8416 1.9556 35 1 3.0415 -0.9517 1.9559 36 1 2.2695 -4.5635 2.4684 37 1 1.4987 -4.1176 0.9272 38 1 3.0399 -5.0083 0.9267 39 1 5.0213 -4.8577 0.5511 40 1 5.0215 -4.8576 2.3311 41 1 9.3049 -3.9201 1.4432 42 1 10.8061 -5.8652 1.4409 43 1 8.6242 -9.8433 1.4374 44 1 10.1764 -10.4862 1.4336 45 1 7.4018 -8.4777 1.4278 46 1 5.9113 -6.5243 1.4391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272172086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:10 Heat of formation + Delta-G solvation = -46.561586 kcal Electronic energy + Delta-G solvation = -27791.274237 eV Core-core repulsion = 23682.801441 eV Total energy + Delta-G solvation = -4108.472796 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.91523 -40.00613 -39.17613 -37.28974 -36.06139 -34.96383 -34.24683 -31.72316 -31.44444 -30.72282 -29.45527 -27.86921 -26.39887 -25.83427 -24.16702 -23.63355 -22.80159 -21.00258 -20.56572 -19.20213 -19.00841 -18.14421 -17.37503 -16.91163 -16.72172 -16.56664 -16.13127 -15.47019 -15.38135 -15.15517 -14.98706 -14.54209 -14.42843 -13.97802 -13.75994 -13.59104 -13.32628 -13.13127 -13.04433 -12.75325 -12.67634 -12.55780 -12.39861 -11.92972 -11.48065 -11.34878 -11.27758 -10.87733 -10.80597 -10.51958 -10.47726 -10.17057 -10.15530 -9.95105 -9.79899 -9.62695 -9.52939 -8.67985 -8.66597 -8.43733 -6.76187 -5.71633 -3.17056 0.49281 0.89190 2.36243 2.47642 2.64870 3.09048 3.39662 3.44922 3.45374 3.47534 3.50850 4.15619 4.31525 4.40977 4.47240 4.54555 4.58788 4.71664 4.76748 4.98807 4.99592 5.17132 5.27272 5.45787 5.48623 5.52984 5.62466 5.65703 5.74724 5.81037 5.91009 6.17138 6.19923 6.23067 6.34365 6.50257 6.68526 6.69769 6.87567 6.91410 6.99798 7.36160 7.48809 7.69831 7.83730 7.85745 8.26372 8.41598 9.25672 9.87072 10.34469 11.33852 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023881 B = 0.001909 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.217494 B =14664.465535 C =15611.724150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.598 5.598 3 C -0.252 4.252 4 H 0.070 0.930 5 C 0.001 3.999 6 N -0.911 5.911 7 Si 0.906 3.094 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.282 1.282 11 C 0.143 3.857 12 C 0.094 3.906 13 N -0.609 5.609 14 C 0.074 3.926 15 C 0.507 3.493 16 O -0.506 6.506 17 C 0.041 3.959 18 O -0.281 6.281 19 C 0.165 3.835 20 C -0.157 4.157 21 C -0.016 4.016 22 C -0.188 4.188 23 C 0.569 3.431 24 N -0.854 5.854 25 O -0.544 6.544 26 C -0.042 4.042 27 C -0.222 4.222 28 H 0.028 0.972 29 H 0.046 0.954 30 H -0.005 1.005 31 H 0.253 0.747 32 H 0.047 0.953 33 H 0.036 0.964 34 H 0.071 0.929 35 H 0.087 0.913 36 H 0.056 0.944 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.143 0.857 42 H 0.144 0.856 43 H 0.400 0.600 44 H 0.404 0.596 45 H 0.129 0.871 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.103 -26.921 1.716 28.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.321 5.321 3 C -0.382 4.382 4 H 0.088 0.912 5 C -0.197 4.197 6 N -0.557 5.557 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.208 1.208 11 C 0.015 3.985 12 C -0.030 4.030 13 N -0.345 5.345 14 C -0.069 4.069 15 C 0.292 3.708 16 O -0.380 6.380 17 C -0.038 4.038 18 O -0.192 6.192 19 C 0.118 3.882 20 C -0.176 4.176 21 C -0.034 4.034 22 C -0.192 4.192 23 C 0.356 3.644 24 N -0.418 5.418 25 O -0.423 6.423 26 C -0.061 4.061 27 C -0.241 4.241 28 H 0.047 0.953 29 H 0.065 0.935 30 H 0.014 0.986 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.161 0.839 42 H 0.162 0.838 43 H 0.229 0.771 44 H 0.235 0.765 45 H 0.147 0.853 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.069 -25.667 1.773 27.628 hybrid contribution -0.312 0.173 0.047 0.360 sum 9.756 -25.494 1.820 27.358 Atomic orbital electron populations 1.20828 0.82325 0.95636 0.99298 1.43965 1.01952 1.00570 1.85626 1.19227 0.98003 0.85183 1.35782 0.91223 1.25030 0.97679 0.98631 0.98315 1.70047 1.17900 1.27241 1.40492 0.86296 0.78651 0.83491 0.77928 1.21042 1.21644 1.20773 1.21119 0.96143 0.88253 0.93012 1.22732 0.95384 0.82696 1.02199 1.48018 1.04736 1.08439 1.73323 1.21841 0.98089 0.85304 1.01715 1.19860 0.82677 0.89932 0.78353 1.90811 1.67199 1.32702 1.47281 1.22691 0.79819 0.97713 1.03571 1.86193 1.16030 1.29955 1.87034 1.19413 0.90770 0.86000 0.91996 1.20509 0.89782 1.00618 1.06671 1.21091 1.00595 0.90001 0.91764 1.19734 0.93251 0.93851 1.12315 1.18182 0.87730 0.83455 0.75046 1.43753 1.11805 1.07823 1.78405 1.90828 1.15142 1.86213 1.50072 1.21013 0.91951 0.98533 0.94555 1.21203 1.00830 0.91665 1.10399 0.95345 0.93496 0.98602 0.93718 0.93485 0.94615 0.91084 0.89461 0.92530 0.90294 0.91757 0.88847 0.88945 0.83921 0.83823 0.77060 0.76487 0.85344 0.84622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.96 9.01 59.84 0.54 4.50 16 2 N -0.60 -15.14 2.93 -181.12 -0.53 -15.67 16 3 C -0.25 -7.13 9.67 -15.06 -0.15 -7.27 16 4 H 0.07 1.99 7.84 -52.49 -0.41 1.58 16 5 C 0.00 0.04 5.13 -17.43 -0.09 -0.05 16 6 N -0.91 -26.62 10.59 55.49 0.59 -26.03 16 7 Si 0.91 22.53 29.57 -169.99 -5.03 17.50 16 8 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 9 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 C 0.14 2.96 6.03 -4.04 -0.02 2.94 16 12 C 0.09 1.74 5.73 -4.04 -0.02 1.71 16 13 N -0.61 -8.58 2.87 -181.56 -0.52 -9.10 16 14 C 0.07 0.63 10.24 59.85 0.61 1.24 16 15 C 0.51 7.78 7.75 -10.99 -0.09 7.70 16 16 O -0.51 -10.63 16.08 -14.35 -0.23 -10.86 16 17 C 0.04 0.42 3.77 36.01 0.14 0.55 16 18 O -0.28 -3.59 9.66 -38.74 -0.37 -3.97 16 19 C 0.17 1.69 6.70 -39.02 -0.26 1.43 16 20 C -0.16 -1.57 9.97 -39.50 -0.39 -1.96 16 21 C -0.02 -0.15 9.59 -39.22 -0.38 -0.52 16 22 C -0.19 -1.59 5.88 -104.96 -0.62 -2.21 16 23 C 0.57 5.09 8.04 -12.44 -0.10 4.99 16 24 N -0.85 -3.86 8.82 30.47 0.27 -3.59 16 25 O -0.54 -7.09 17.18 5.29 0.09 -7.00 16 26 C -0.04 -0.26 9.53 -39.21 -0.37 -0.63 16 27 C -0.22 -1.62 9.01 -39.49 -0.36 -1.97 16 28 H 0.03 0.73 7.42 -51.93 -0.39 0.34 16 29 H 0.05 1.23 7.19 -51.93 -0.37 0.86 16 30 H 0.00 -0.09 7.84 -51.93 -0.41 -0.50 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.05 1.04 8.03 -51.93 -0.42 0.63 16 33 H 0.04 0.65 7.86 -51.93 -0.41 0.24 16 34 H 0.07 1.27 8.07 -51.93 -0.42 0.85 16 35 H 0.09 1.97 7.42 -51.93 -0.39 1.59 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 38 H 0.06 0.35 6.44 -51.93 -0.33 0.02 16 39 H 0.09 0.68 6.91 -51.93 -0.36 0.32 16 40 H 0.09 0.66 7.62 -51.93 -0.40 0.27 16 41 H 0.14 1.36 8.06 -52.48 -0.42 0.93 16 42 H 0.14 1.29 7.64 -52.49 -0.40 0.89 16 43 H 0.40 0.63 6.85 -40.82 -0.28 0.35 16 44 H 0.40 1.37 8.93 -40.82 -0.36 1.00 16 45 H 0.13 0.32 6.39 -52.49 -0.34 -0.01 16 46 H 0.14 0.64 6.28 -52.49 -0.33 0.31 16 LS Contribution 386.38 15.07 5.82 5.82 Total: -1.00 -37.83 386.38 -7.88 -45.71 By element: Atomic # 1 Polarization: 3.16 SS G_CDS: -6.41 Total: -3.25 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -1.56 Total: 10.44 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.20 Total: -54.39 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.51 Total: -21.83 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.03 Total: 17.50 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -37.83 -7.88 -45.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272172086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.851 kcal (2) G-P(sol) polarization free energy of solvation -37.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds