Wall clock time and date at job start Tue Mar 31 2020 18:41:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36936 * 120.00507 * 2 1 4 4 H 1.07998 * 120.00510 * 202.34660 * 3 2 1 5 5 C 1.38809 * 119.99626 * 22.34582 * 3 2 1 6 6 N 1.31622 * 120.00391 * 11.34635 * 5 3 2 7 7 Si 1.86803 * 120.00052 * 191.34548 * 5 3 2 8 8 H 1.48501 * 109.47021 * 59.99966 * 7 5 3 9 9 H 1.48497 * 109.47280 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47064 * 300.00191 * 7 5 3 11 11 C 1.46504 * 119.99810 * 180.02562 * 2 1 3 12 12 C 1.53004 * 109.46876 * 269.99954 * 11 2 1 13 13 N 1.46504 * 109.46876 * 179.97438 * 12 11 2 14 14 C 1.46505 * 119.99572 * 270.00003 * 13 12 11 15 15 C 1.34768 * 120.00085 * 89.99850 * 13 12 11 16 16 O 1.21278 * 120.00047 * 0.02562 * 15 13 12 17 17 C 1.50701 * 120.00017 * 179.97438 * 15 13 12 18 18 O 1.42904 * 109.47344 * 180.02562 * 17 15 13 19 19 C 1.35710 * 117.00397 * 180.02562 * 18 17 15 20 20 C 1.38987 * 119.91286 * 180.02562 * 19 18 17 21 21 C 1.37706 * 120.09016 * 180.02562 * 20 19 18 22 22 C 1.39738 * 119.90937 * 359.97438 * 21 20 19 23 23 C 1.47600 * 120.08744 * 180.02562 * 22 21 20 24 24 N 1.34774 * 119.99876 * 179.97438 * 23 22 21 25 25 O 1.21587 * 119.99960 * 359.97438 * 23 22 21 26 26 C 1.39740 * 119.82184 * 0.27220 * 22 21 20 27 27 C 1.37705 * 119.91030 * 359.47092 * 26 22 21 28 28 H 1.08997 * 109.47423 * 274.21142 * 1 2 3 29 29 H 1.09005 * 109.47216 * 34.20630 * 1 2 3 30 30 H 1.09005 * 109.47508 * 154.20671 * 1 2 3 31 31 H 0.96997 * 120.00566 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.47508 * 149.99905 * 11 2 1 33 33 H 1.09000 * 109.47033 * 29.99928 * 11 2 1 34 34 H 1.09003 * 109.47125 * 60.00166 * 12 11 2 35 35 H 1.08995 * 109.46841 * 299.99693 * 12 11 2 36 36 H 1.08997 * 109.46935 * 269.99824 * 14 13 12 37 37 H 1.09000 * 109.47588 * 30.00114 * 14 13 12 38 38 H 1.09003 * 109.46847 * 150.00507 * 14 13 12 39 39 H 1.08996 * 109.47163 * 60.00363 * 17 15 13 40 40 H 1.08998 * 109.46899 * 299.99884 * 17 15 13 41 41 H 1.08003 * 119.95680 * 0.02562 * 20 19 18 42 42 H 1.07996 * 120.04888 * 179.97438 * 21 20 19 43 43 H 0.96999 * 120.00014 * 0.02562 * 24 23 22 44 44 H 0.96999 * 119.99967 * 179.72115 * 24 23 22 45 45 H 1.08000 * 120.04039 * 179.73123 * 26 22 21 46 46 H 1.07997 * 119.95450 * 180.25382 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1689 1.2210 -0.3556 5 6 1.5339 2.3428 0.4571 6 7 0.3842 2.2691 1.0936 7 14 2.3368 4.0047 0.1688 8 1 2.4917 4.2331 -1.2904 9 1 1.4852 5.0734 0.7500 10 1 3.6722 4.0285 0.8180 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7111 1.4418 13 7 3.1844 -2.9802 1.4412 14 6 2.4512 -4.2485 1.4409 15 6 4.5320 -2.9808 1.4410 16 8 5.1389 -1.9308 1.4418 17 6 5.2849 -4.2863 1.4410 18 8 6.6900 -4.0258 1.4414 19 6 7.5163 -5.1024 1.4409 20 6 8.8939 -4.9188 1.4417 21 6 9.7357 -6.0087 1.4407 22 6 9.2030 -7.3005 1.4393 23 6 10.1016 -8.4715 1.4388 24 7 9.5859 -9.7166 1.4380 25 8 11.3070 -8.3127 1.4391 26 6 7.8173 -7.4808 1.4333 27 6 6.9823 -6.3858 1.4397 28 1 -0.3634 0.0755 1.0248 29 1 -0.3634 0.8499 -0.5777 30 1 -0.3634 -0.9253 -0.4472 31 1 -0.0460 3.0775 1.4133 32 1 3.1498 -1.1383 -0.5143 33 1 1.6083 -2.0282 -0.5147 34 1 1.5000 -1.8416 1.9556 35 1 3.0415 -0.9517 1.9559 36 1 2.2695 -4.5635 2.4684 37 1 1.4987 -4.1176 0.9272 38 1 3.0399 -5.0083 0.9267 39 1 5.0213 -4.8577 0.5511 40 1 5.0215 -4.8576 2.3311 41 1 9.3049 -3.9201 1.4432 42 1 10.8061 -5.8652 1.4409 43 1 8.6242 -9.8433 1.4374 44 1 10.1764 -10.4862 1.4336 45 1 7.4018 -8.4777 1.4278 46 1 5.9113 -6.5243 1.4391 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272172086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:41:09 Heat of formation + Delta-G solvation = -74.897078 kcal Electronic energy + Delta-G solvation = -27792.502956 eV Core-core repulsion = 23682.801441 eV Total energy + Delta-G solvation = -4109.701515 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.67897 -40.91443 -40.09160 -38.11528 -37.68680 -36.43533 -34.84015 -33.54599 -32.16892 -31.54947 -30.70528 -28.91793 -27.92044 -27.39896 -25.27442 -24.62477 -23.69029 -22.41686 -21.58412 -20.28489 -19.69044 -18.84440 -18.79183 -18.13114 -17.60980 -17.59181 -17.21372 -16.87280 -16.22267 -16.04569 -15.95488 -15.72403 -15.55022 -15.13062 -15.08680 -14.74818 -14.40069 -14.25616 -14.00759 -13.94616 -13.83751 -13.48265 -13.42486 -13.12845 -13.05532 -12.78740 -12.74849 -12.44339 -12.11537 -12.09658 -12.02658 -11.95530 -11.60965 -11.21003 -10.86819 -10.70019 -10.69518 -10.12670 -9.79918 -9.34585 -8.78696 -7.87613 -5.34761 -0.15819 0.29931 1.41761 1.43922 1.47084 1.51640 1.52694 1.81888 2.43014 2.52260 2.59738 2.82368 3.26517 3.37179 3.70818 3.77961 3.84031 3.95235 3.96455 4.07938 4.14835 4.19711 4.39180 4.39529 4.46210 4.53383 4.61760 4.79682 4.85218 4.93882 4.95606 4.99150 5.05545 5.16781 5.18523 5.30443 5.34541 5.50404 5.58814 5.62269 5.73523 5.90349 6.21611 6.30499 6.43016 6.46036 7.12764 7.14607 7.32458 7.84014 8.23524 9.15072 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023881 B = 0.001909 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.217494 B =14664.465535 C =15611.724150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.617 5.617 3 C -0.264 4.264 4 H 0.055 0.945 5 C -0.048 4.048 6 N -0.933 5.933 7 Si 0.964 3.036 8 H -0.277 1.277 9 H -0.286 1.286 10 H -0.285 1.285 11 C 0.148 3.852 12 C 0.111 3.889 13 N -0.605 5.605 14 C 0.063 3.937 15 C 0.496 3.504 16 O -0.581 6.581 17 C 0.048 3.952 18 O -0.320 6.320 19 C 0.147 3.853 20 C -0.177 4.177 21 C -0.029 4.029 22 C -0.197 4.197 23 C 0.565 3.435 24 N -0.829 5.829 25 O -0.596 6.596 26 C -0.026 4.026 27 C -0.211 4.211 28 H 0.008 0.992 29 H 0.017 0.983 30 H 0.039 0.961 31 H 0.250 0.750 32 H 0.023 0.977 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.034 0.966 36 H 0.079 0.921 37 H 0.083 0.917 38 H 0.106 0.894 39 H 0.135 0.865 40 H 0.134 0.866 41 H 0.129 0.871 42 H 0.133 0.867 43 H 0.418 0.582 44 H 0.412 0.588 45 H 0.176 0.824 46 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.477 -31.197 1.442 32.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.340 5.340 3 C -0.395 4.395 4 H 0.073 0.927 5 C -0.243 4.243 6 N -0.579 5.579 7 Si 0.792 3.208 8 H -0.203 1.203 9 H -0.212 1.212 10 H -0.211 1.211 11 C 0.021 3.979 12 C -0.014 4.014 13 N -0.339 5.339 14 C -0.078 4.078 15 C 0.284 3.716 16 O -0.460 6.460 17 C -0.029 4.029 18 O -0.232 6.232 19 C 0.101 3.899 20 C -0.196 4.196 21 C -0.048 4.048 22 C -0.200 4.200 23 C 0.352 3.648 24 N -0.393 5.393 25 O -0.479 6.479 26 C -0.044 4.044 27 C -0.230 4.230 28 H 0.026 0.974 29 H 0.036 0.964 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.091 0.909 34 H 0.099 0.901 35 H 0.053 0.947 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.125 0.875 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.251 0.749 44 H 0.245 0.755 45 H 0.193 0.807 46 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 8.387 -30.065 1.494 31.249 hybrid contribution 0.198 1.346 0.118 1.366 sum 8.585 -28.719 1.612 30.018 Atomic orbital electron populations 1.20610 0.81720 0.96479 0.97900 1.44154 1.02601 1.01283 1.86006 1.19358 0.97653 0.86986 1.35477 0.92675 1.25699 0.98464 1.01546 0.98615 1.70180 1.18817 1.27626 1.41325 0.85400 0.77532 0.79886 0.77993 1.20268 1.21177 1.21091 1.21158 0.95113 0.87334 0.94338 1.22041 0.95270 0.84184 0.99920 1.47984 1.04786 1.08823 1.72338 1.22293 0.98426 0.83063 1.04009 1.20925 0.82930 0.91197 0.76537 1.90782 1.68774 1.35831 1.50651 1.22812 0.78312 0.94438 1.07307 1.86137 1.17371 1.31911 1.87813 1.19580 0.90244 0.86812 0.93296 1.20504 0.90689 1.00327 1.08095 1.21063 1.00205 0.90811 0.92686 1.19865 0.94645 0.93030 1.12473 1.18331 0.87054 0.84707 0.74669 1.43549 1.13059 1.06575 1.76134 1.90808 1.17269 1.87014 1.52781 1.21463 0.90436 1.00539 0.92000 1.21587 1.02826 0.90044 1.08511 0.97391 0.96402 0.94309 0.94063 0.95868 0.90942 0.90059 0.94701 0.90280 0.89778 0.87527 0.84755 0.84827 0.85274 0.84866 0.74926 0.75547 0.80672 0.80804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.53 9.01 127.77 1.15 9.68 16 2 N -0.62 -31.59 2.93 -726.93 -2.13 -33.71 16 3 C -0.26 -15.41 9.67 84.03 0.81 -14.59 16 4 H 0.06 3.30 7.84 -2.91 -0.02 3.28 16 5 C -0.05 -2.79 5.13 84.86 0.44 -2.35 16 6 N -0.93 -55.70 10.59 21.65 0.23 -55.48 16 7 Si 0.96 47.44 29.57 68.60 2.03 49.47 16 8 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 9 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 10 H -0.28 -14.03 7.11 99.48 0.71 -13.32 16 11 C 0.15 6.07 6.03 86.38 0.52 6.59 16 12 C 0.11 4.14 5.73 86.38 0.50 4.64 16 13 N -0.61 -15.82 2.87 -846.74 -2.43 -18.26 16 14 C 0.06 0.74 10.24 127.77 1.31 2.05 16 15 C 0.50 14.78 7.75 87.66 0.68 15.46 16 16 O -0.58 -25.70 16.08 16.01 0.26 -25.44 16 17 C 0.05 0.81 3.77 71.24 0.27 1.08 16 18 O -0.32 -7.85 9.66 -71.27 -0.69 -8.54 16 19 C 0.15 2.78 6.70 22.63 0.15 2.93 16 20 C -0.18 -3.70 9.97 22.32 0.22 -3.48 16 21 C -0.03 -0.55 9.59 22.51 0.22 -0.34 16 22 C -0.20 -2.97 5.88 -20.08 -0.12 -3.09 16 23 C 0.57 9.24 8.04 86.71 0.70 9.94 16 24 N -0.83 -4.81 8.82 -175.77 -1.55 -6.36 16 25 O -0.60 -15.69 17.18 -3.99 -0.07 -15.76 16 26 C -0.03 -0.20 9.53 22.51 0.21 0.01 16 27 C -0.21 -2.08 9.01 22.33 0.20 -1.88 16 28 H 0.01 0.40 7.42 -2.39 -0.02 0.39 16 29 H 0.02 0.92 7.19 -2.38 -0.02 0.91 16 30 H 0.04 1.50 7.84 -2.38 -0.02 1.48 16 31 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.02 1.05 8.03 -2.39 -0.02 1.03 16 33 H 0.07 2.43 7.86 -2.39 -0.02 2.41 16 34 H 0.08 2.84 8.07 -2.39 -0.02 2.82 16 35 H 0.03 1.66 7.42 -2.39 -0.02 1.64 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 0.97 8.07 -2.39 -0.02 0.95 16 38 H 0.11 0.40 6.44 -2.39 -0.02 0.39 16 39 H 0.14 1.14 6.91 -2.39 -0.02 1.12 16 40 H 0.13 1.14 7.62 -2.39 -0.02 1.12 16 41 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 42 H 0.13 2.71 7.64 -2.91 -0.02 2.69 16 43 H 0.42 -0.71 6.85 -92.71 -0.64 -1.35 16 44 H 0.41 1.63 8.93 -92.71 -0.83 0.80 16 45 H 0.18 -0.34 6.39 -2.91 -0.02 -0.36 16 46 H 0.17 0.33 6.28 -2.91 -0.02 0.31 16 Total: -1.00 -91.97 386.38 2.47 -89.50 By element: Atomic # 1 Polarization: -1.64 SS G_CDS: -0.44 Total: -2.08 kcal Atomic # 6 Polarization: 19.41 SS G_CDS: 7.26 Total: 26.66 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -5.88 Total: -113.81 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: -0.50 Total: -49.75 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -91.97 2.47 -89.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272172086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.604 kcal (2) G-P(sol) polarization free energy of solvation -91.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds