Wall clock time and date at job start Tue Mar 31 2020 19:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35436 * 116.99870 * 2 1 4 4 N 1.32226 * 119.79965 * 0.02562 * 3 2 1 5 5 C 1.31886 * 121.80216 * 179.68456 * 4 3 2 6 6 C 1.38354 * 121.17835 * 0.59398 * 5 4 3 7 7 C 1.38339 * 119.46080 * 359.42312 * 6 5 4 8 8 C 1.39982 * 118.35074 * 0.27502 * 7 6 5 9 9 C 1.47525 * 120.60007 * 179.97438 * 8 7 6 10 10 O 1.21590 * 120.00200 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99903 * 359.97438 * 9 8 7 12 12 C 1.46498 * 120.00022 * 174.93465 * 11 9 8 13 13 C 1.53000 * 109.49455 * 59.91973 * 12 11 9 14 14 O 1.42905 * 109.47338 * 54.31146 * 13 12 11 15 15 C 1.53039 * 109.49993 * 299.85428 * 12 11 9 16 16 C 1.53035 * 109.53776 * 301.41377 * 15 12 11 17 17 C 1.53191 * 109.31146 * 298.63269 * 16 15 12 18 18 N 1.46923 * 108.77702 * 54.63594 * 17 16 15 19 19 C 1.36944 * 120.63132 * 126.38799 * 18 17 16 20 20 H 1.08003 * 119.99667 * 330.46560 * 19 18 17 21 21 C 1.38811 * 119.99845 * 150.46115 * 19 18 17 22 22 N 1.31610 * 120.00268 * 341.57113 * 21 19 18 23 23 Si 1.86802 * 119.99576 * 161.56563 * 21 19 18 24 24 H 1.48501 * 109.47593 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46753 * 120.00427 * 23 21 19 26 26 H 1.48501 * 109.47200 * 240.00090 * 23 21 19 27 27 C 1.46917 * 118.74056 * 306.39416 * 18 17 16 28 28 H 1.08998 * 109.46878 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46837 * 300.00334 * 1 2 3 30 30 H 1.08995 * 109.47535 * 60.00327 * 1 2 3 31 31 H 1.07999 * 119.40795 * 180.31762 * 5 4 3 32 32 H 1.08000 * 120.26872 * 179.70042 * 6 5 4 33 33 H 1.08001 * 120.82509 * 180.26186 * 7 6 5 34 34 H 0.97002 * 119.99950 * 354.94354 * 11 9 8 35 35 H 1.09002 * 109.47089 * 174.30972 * 13 12 11 36 36 H 1.08998 * 109.47578 * 294.31086 * 13 12 11 37 37 H 0.96697 * 114.00215 * 179.97438 * 14 13 12 38 38 H 1.09001 * 109.45386 * 61.43390 * 15 12 11 39 39 H 1.09001 * 109.46062 * 181.38997 * 15 12 11 40 40 H 1.08998 * 109.50135 * 58.58728 * 16 15 12 41 41 H 1.09002 * 109.49537 * 178.68155 * 16 15 12 42 42 H 1.09004 * 109.58627 * 174.42289 * 17 16 15 43 43 H 1.08994 * 109.58857 * 294.84789 * 17 16 15 44 44 H 0.97005 * 120.00030 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.58704 * 293.81766 * 27 18 17 46 46 H 1.09001 * 109.59284 * 173.39135 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0438 1.2068 0.0000 4 7 1.3197 2.3132 0.0005 5 6 1.8770 3.5085 0.0067 6 6 3.2525 3.6575 0.0007 7 6 4.0587 2.5333 0.0001 8 6 3.4450 1.2752 -0.0003 9 6 4.2570 0.0436 -0.0015 10 8 3.7125 -1.0436 -0.0022 11 7 5.6024 0.1234 -0.0028 12 6 6.4086 -1.0947 0.1081 13 6 6.0913 -2.0254 -1.0642 14 8 6.2689 -1.3199 -2.2942 15 6 6.0848 -1.8036 1.4252 16 6 6.3700 -0.8615 2.5970 17 6 7.8567 -0.4919 2.5996 18 7 8.2096 0.0579 1.2836 19 6 8.8196 1.2795 1.1786 20 1 8.6347 2.0410 1.9218 21 6 9.6754 1.5389 0.1169 22 7 10.1878 0.5427 -0.5739 23 14 10.0997 3.3020 -0.3313 24 1 9.3995 4.2300 0.5927 25 1 11.5666 3.5027 -0.2161 26 1 9.6708 3.5749 -1.7266 27 6 7.8957 -0.7277 0.0825 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 1.2484 4.3866 0.0121 32 1 3.6932 4.6435 0.0010 33 1 5.1349 2.6241 -0.0003 34 1 6.0369 0.9875 -0.0769 35 1 6.7618 -2.8844 -1.0379 36 1 5.0593 -2.3677 -0.9874 37 1 6.0851 -1.8500 -3.0817 38 1 5.0325 -2.0877 1.4354 39 1 6.7027 -2.6966 1.5184 40 1 5.7705 0.0427 2.4912 41 1 6.1171 -1.3587 3.5334 42 1 8.0462 0.2551 3.3704 43 1 8.4542 -1.3821 2.7958 44 1 10.7856 0.7240 -1.3160 45 1 8.4964 -1.6373 0.0734 46 1 8.1108 -0.1364 -0.8076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279510243.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:01 Heat of formation + Delta-G solvation = -52.645217 kcal Electronic energy + Delta-G solvation = -31110.703711 eV Core-core repulsion = 27001.967109 eV Total energy + Delta-G solvation = -4108.736602 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.85483 -39.57423 -37.85395 -37.18420 -35.84179 -33.70473 -33.03636 -32.16688 -30.90641 -30.09086 -29.60772 -27.23538 -25.42814 -25.04249 -24.55760 -22.91464 -22.25383 -21.16133 -20.18281 -18.69265 -18.37339 -17.39245 -16.94126 -16.74825 -16.67996 -16.03976 -15.30195 -14.94492 -14.76873 -14.51415 -14.31822 -14.07935 -14.04963 -13.60693 -13.53789 -13.19127 -13.00026 -12.84222 -12.57177 -12.41109 -12.29412 -11.88017 -11.76086 -11.43817 -11.23814 -11.12343 -11.00633 -10.76476 -10.46582 -10.21954 -10.02101 -9.98225 -9.93989 -9.77839 -9.58202 -9.50196 -8.86702 -8.56552 -8.53752 -8.25673 -6.71151 -5.85340 -3.28948 0.74228 1.23689 3.08144 3.21331 3.32149 3.40351 3.42270 3.65398 3.98056 4.23810 4.43586 4.71951 4.78735 4.87478 5.01313 5.17969 5.26502 5.26601 5.27779 5.42464 5.45645 5.56297 5.62598 5.74687 5.79051 5.85114 5.88285 6.00855 6.07166 6.14851 6.30158 6.35906 6.40988 6.50592 6.53634 6.67606 6.82780 6.98340 7.09003 7.22900 7.33761 7.57141 7.70741 7.76152 8.11734 8.23254 8.39616 8.81404 9.14094 9.77787 10.36782 11.22819 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011915 B = 0.004763 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.342354 B = 5877.565766 C = 6966.223463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.269 6.269 3 C 0.366 3.634 4 N -0.550 5.550 5 C 0.156 3.844 6 C -0.219 4.219 7 C -0.006 4.006 8 C -0.199 4.199 9 C 0.562 3.438 10 O -0.533 6.533 11 N -0.682 5.682 12 C 0.160 3.840 13 C 0.068 3.932 14 O -0.560 6.560 15 C -0.120 4.120 16 C -0.128 4.128 17 C 0.143 3.857 18 N -0.590 5.590 19 C -0.262 4.262 20 H 0.066 0.934 21 C 0.009 3.991 22 N -0.893 5.893 23 Si 0.896 3.104 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.288 1.288 27 C 0.176 3.824 28 H 0.095 0.905 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.161 0.839 32 H 0.143 0.857 33 H 0.150 0.850 34 H 0.404 0.596 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.367 0.633 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.017 0.983 44 H 0.254 0.746 45 H 0.032 0.968 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.170 1.189 0.086 15.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.173 6.173 3 C 0.186 3.814 4 N -0.275 5.275 5 C 0.000 4.000 6 C -0.239 4.239 7 C -0.032 4.032 8 C -0.206 4.206 9 C 0.348 3.652 10 O -0.412 6.412 11 N -0.332 5.332 12 C 0.072 3.928 13 C -0.011 4.011 14 O -0.364 6.364 15 C -0.158 4.158 16 C -0.167 4.167 17 C 0.017 3.983 18 N -0.312 5.312 19 C -0.392 4.392 20 H 0.084 0.916 21 C -0.191 4.191 22 N -0.536 5.536 23 Si 0.725 3.275 24 H -0.202 1.202 25 H -0.217 1.217 26 H -0.214 1.214 27 C 0.050 3.950 28 H 0.114 0.886 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.178 0.822 32 H 0.161 0.839 33 H 0.168 0.832 34 H 0.241 0.759 35 H 0.061 0.939 36 H 0.081 0.919 37 H 0.212 0.788 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -16.026 0.526 0.400 16.040 hybrid contribution 1.064 1.085 -0.709 1.677 sum -14.962 1.611 -0.308 15.052 Atomic orbital electron populations 1.22898 0.78104 1.02968 1.02007 1.86551 1.21801 1.23077 1.85892 1.19852 0.88199 0.84958 0.88432 1.67421 1.40450 0.98717 1.20884 1.22570 0.93040 0.93630 0.90766 1.21942 0.94653 1.00042 1.07312 1.21849 1.01330 0.90557 0.89504 1.20247 0.91557 0.95629 1.13122 1.17686 0.82411 0.87846 0.77236 1.90696 1.72038 1.28030 1.50433 1.45701 1.04449 1.10869 1.72217 1.21199 0.95403 0.83973 0.92243 1.22628 1.00228 0.93914 0.84365 1.86550 1.92576 1.42098 1.15155 1.21721 1.01833 0.98145 0.94146 1.21919 0.99532 0.98879 0.96395 1.20971 0.91685 0.96523 0.89162 1.44036 1.68490 1.19532 0.99167 1.19170 1.20589 0.88957 1.10443 0.91614 1.25079 0.96301 0.97066 1.00650 1.70037 1.32004 1.29454 1.22121 0.86342 0.77979 0.84950 0.78208 1.20166 1.21704 1.21418 1.20964 0.85770 0.95971 0.92307 0.88633 0.92501 0.92516 0.82166 0.83948 0.83234 0.75915 0.93937 0.91922 0.78800 0.91213 0.91943 0.92514 0.93158 0.92862 0.96464 0.93542 0.94984 0.88446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.41 10.38 101.05 1.05 1.46 16 2 O -0.27 -4.34 8.58 -39.77 -0.34 -4.68 16 3 C 0.37 5.80 7.51 -16.61 -0.12 5.68 16 4 N -0.55 -7.52 9.21 -12.98 -0.12 -7.64 16 5 C 0.16 1.71 11.17 -17.49 -0.20 1.51 16 6 C -0.22 -2.42 10.09 -39.50 -0.40 -2.82 16 7 C -0.01 -0.09 9.64 -38.89 -0.37 -0.46 16 8 C -0.20 -3.26 5.90 -104.69 -0.62 -3.87 16 9 C 0.56 10.43 7.18 -12.47 -0.09 10.34 16 10 O -0.53 -10.83 11.51 -16.48 -0.19 -11.02 16 11 N -0.68 -12.79 3.88 -48.53 -0.19 -12.97 16 12 C 0.16 3.09 0.45 -131.70 -0.06 3.03 16 13 C 0.07 1.22 5.61 37.16 0.21 1.43 16 14 O -0.56 -10.08 13.09 -35.23 -0.46 -10.55 16 15 C -0.12 -2.19 4.48 -26.69 -0.12 -2.31 16 16 C -0.13 -2.31 5.93 -26.61 -0.16 -2.47 16 17 C 0.14 2.93 6.52 -3.71 -0.02 2.90 16 18 N -0.59 -13.86 2.88 -172.32 -0.50 -14.36 16 19 C -0.26 -6.70 9.55 -15.06 -0.14 -6.85 16 20 H 0.07 1.66 7.90 -52.48 -0.41 1.25 16 21 C 0.01 0.24 4.86 -17.43 -0.08 0.15 16 22 N -0.89 -24.92 11.40 55.49 0.63 -24.28 16 23 Si 0.90 20.51 29.59 -169.99 -5.03 15.48 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 C 0.18 4.03 3.86 -3.71 -0.01 4.01 16 28 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 30 H 0.06 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.15 2.00 6.53 -52.49 -0.34 1.66 16 34 H 0.40 7.75 6.57 -40.82 -0.27 7.48 16 35 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.06 1.16 6.19 -51.93 -0.32 0.83 16 37 H 0.37 4.81 9.12 45.56 0.42 5.23 16 38 H 0.07 1.31 6.40 -51.93 -0.33 0.98 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.06 1.07 7.53 -51.93 -0.39 0.68 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 45 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 46 H 0.10 2.53 6.09 -51.93 -0.32 2.21 16 LS Contribution 368.32 15.07 5.55 5.55 Total: -1.00 -32.08 368.32 -7.53 -39.61 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -5.74 Total: 13.13 kcal Atomic # 6 Polarization: 12.87 SS G_CDS: -1.15 Total: 11.73 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.17 Total: -59.26 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -0.99 Total: -26.24 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.08 -7.53 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279510243.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.031 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds