Wall clock time and date at job start Tue Mar 31 2020 19:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35436 * 116.99870 * 2 1 4 4 N 1.32226 * 119.79965 * 0.02562 * 3 2 1 5 5 C 1.31886 * 121.80216 * 179.68456 * 4 3 2 6 6 C 1.38354 * 121.17835 * 0.59398 * 5 4 3 7 7 C 1.38339 * 119.46080 * 359.42312 * 6 5 4 8 8 C 1.39982 * 118.35074 * 0.27502 * 7 6 5 9 9 C 1.47525 * 120.60007 * 179.97438 * 8 7 6 10 10 O 1.21590 * 120.00200 * 180.02562 * 9 8 7 11 11 N 1.34776 * 119.99903 * 359.97438 * 9 8 7 12 12 C 1.46498 * 120.00022 * 174.93465 * 11 9 8 13 13 C 1.53000 * 109.49455 * 59.91973 * 12 11 9 14 14 O 1.42905 * 109.47338 * 54.31146 * 13 12 11 15 15 C 1.53039 * 109.49993 * 299.85428 * 12 11 9 16 16 C 1.53035 * 109.53776 * 301.41377 * 15 12 11 17 17 C 1.53191 * 109.31146 * 298.63269 * 16 15 12 18 18 N 1.46923 * 108.77702 * 54.63594 * 17 16 15 19 19 C 1.36944 * 120.63132 * 126.38799 * 18 17 16 20 20 H 1.08003 * 119.99667 * 330.46560 * 19 18 17 21 21 C 1.38811 * 119.99845 * 150.46115 * 19 18 17 22 22 N 1.31610 * 120.00268 * 341.57113 * 21 19 18 23 23 Si 1.86802 * 119.99576 * 161.56563 * 21 19 18 24 24 H 1.48501 * 109.47593 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46753 * 120.00427 * 23 21 19 26 26 H 1.48501 * 109.47200 * 240.00090 * 23 21 19 27 27 C 1.46917 * 118.74056 * 306.39416 * 18 17 16 28 28 H 1.08998 * 109.46878 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46837 * 300.00334 * 1 2 3 30 30 H 1.08995 * 109.47535 * 60.00327 * 1 2 3 31 31 H 1.07999 * 119.40795 * 180.31762 * 5 4 3 32 32 H 1.08000 * 120.26872 * 179.70042 * 6 5 4 33 33 H 1.08001 * 120.82509 * 180.26186 * 7 6 5 34 34 H 0.97002 * 119.99950 * 354.94354 * 11 9 8 35 35 H 1.09002 * 109.47089 * 174.30972 * 13 12 11 36 36 H 1.08998 * 109.47578 * 294.31086 * 13 12 11 37 37 H 0.96697 * 114.00215 * 179.97438 * 14 13 12 38 38 H 1.09001 * 109.45386 * 61.43390 * 15 12 11 39 39 H 1.09001 * 109.46062 * 181.38997 * 15 12 11 40 40 H 1.08998 * 109.50135 * 58.58728 * 16 15 12 41 41 H 1.09002 * 109.49537 * 178.68155 * 16 15 12 42 42 H 1.09004 * 109.58627 * 174.42289 * 17 16 15 43 43 H 1.08994 * 109.58857 * 294.84789 * 17 16 15 44 44 H 0.97005 * 120.00030 * 179.97438 * 22 21 19 45 45 H 1.09004 * 109.58704 * 293.81766 * 27 18 17 46 46 H 1.09001 * 109.59284 * 173.39135 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0438 1.2068 0.0000 4 7 1.3197 2.3132 0.0005 5 6 1.8770 3.5085 0.0067 6 6 3.2525 3.6575 0.0007 7 6 4.0587 2.5333 0.0001 8 6 3.4450 1.2752 -0.0003 9 6 4.2570 0.0436 -0.0015 10 8 3.7125 -1.0436 -0.0022 11 7 5.6024 0.1234 -0.0028 12 6 6.4086 -1.0947 0.1081 13 6 6.0913 -2.0254 -1.0642 14 8 6.2689 -1.3199 -2.2942 15 6 6.0848 -1.8036 1.4252 16 6 6.3700 -0.8615 2.5970 17 6 7.8567 -0.4919 2.5996 18 7 8.2096 0.0579 1.2836 19 6 8.8196 1.2795 1.1786 20 1 8.6347 2.0410 1.9218 21 6 9.6754 1.5389 0.1169 22 7 10.1878 0.5427 -0.5739 23 14 10.0997 3.3020 -0.3313 24 1 9.3995 4.2300 0.5927 25 1 11.5666 3.5027 -0.2161 26 1 9.6708 3.5749 -1.7266 27 6 7.8957 -0.7277 0.0825 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5137 -0.8899 31 1 1.2484 4.3866 0.0121 32 1 3.6932 4.6435 0.0010 33 1 5.1349 2.6241 -0.0003 34 1 6.0369 0.9875 -0.0769 35 1 6.7618 -2.8844 -1.0379 36 1 5.0593 -2.3677 -0.9874 37 1 6.0851 -1.8500 -3.0817 38 1 5.0325 -2.0877 1.4354 39 1 6.7027 -2.6966 1.5184 40 1 5.7705 0.0427 2.4912 41 1 6.1171 -1.3587 3.5334 42 1 8.0462 0.2551 3.3704 43 1 8.4542 -1.3821 2.7958 44 1 10.7856 0.7240 -1.3160 45 1 8.4964 -1.6373 0.0734 46 1 8.1108 -0.1364 -0.8076 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279510243.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:00 Heat of formation + Delta-G solvation = -76.790397 kcal Electronic energy + Delta-G solvation = -31111.750724 eV Core-core repulsion = 27001.967109 eV Total energy + Delta-G solvation = -4109.783616 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.00041 -40.96489 -38.90074 -38.70245 -37.35281 -35.36422 -34.46308 -33.55947 -32.06517 -31.75651 -31.09090 -28.16102 -27.30063 -26.63568 -25.66615 -24.01366 -23.93082 -22.58361 -21.72260 -20.13371 -19.53962 -18.86200 -18.41278 -18.18873 -17.93551 -17.09603 -16.89503 -16.26926 -16.07682 -15.97855 -15.75335 -15.69535 -15.09647 -15.07450 -14.84037 -14.71512 -14.37574 -14.19859 -13.99079 -13.89324 -13.52728 -13.45510 -13.06099 -12.89377 -12.74587 -12.66823 -12.52579 -12.17950 -12.17863 -11.94519 -11.68684 -11.49778 -11.24849 -11.16958 -10.97601 -10.82786 -10.52430 -10.30823 -9.83597 -9.49574 -8.64288 -7.84124 -5.30281 -0.30629 0.23191 1.49881 1.53147 1.62380 1.99031 2.09151 2.28094 2.54558 2.84645 3.28426 3.31325 3.35055 3.66658 3.75551 3.82141 3.99106 4.09682 4.14748 4.24697 4.29453 4.35983 4.42113 4.42215 4.47680 4.52407 4.63048 4.72207 4.82298 4.84897 4.88664 4.95256 4.97774 5.10345 5.13641 5.20178 5.32517 5.40538 5.48448 5.63705 5.73619 5.77995 6.23306 6.42348 6.67908 6.80762 6.91936 7.16630 7.38667 7.86481 8.42034 9.22334 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011915 B = 0.004763 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.342354 B = 5877.565766 C = 6966.223463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.298 6.298 3 C 0.352 3.648 4 N -0.556 5.556 5 C 0.166 3.834 6 C -0.208 4.208 7 C -0.013 4.013 8 C -0.231 4.231 9 C 0.563 3.437 10 O -0.557 6.557 11 N -0.683 5.683 12 C 0.163 3.837 13 C 0.074 3.926 14 O -0.579 6.579 15 C -0.115 4.115 16 C -0.115 4.115 17 C 0.141 3.859 18 N -0.602 5.602 19 C -0.262 4.262 20 H 0.070 0.930 21 C -0.040 4.040 22 N -0.928 5.928 23 Si 0.958 3.042 24 H -0.259 1.259 25 H -0.299 1.299 26 H -0.291 1.291 27 C 0.194 3.806 28 H 0.113 0.887 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.206 0.794 32 H 0.178 0.822 33 H 0.147 0.853 34 H 0.401 0.599 35 H 0.052 0.948 36 H 0.060 0.940 37 H 0.387 0.613 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.048 0.952 41 H 0.077 0.923 42 H 0.057 0.943 43 H 0.015 0.985 44 H 0.248 0.752 45 H 0.007 0.993 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.940 3.144 0.725 17.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.203 6.203 3 C 0.173 3.827 4 N -0.280 5.280 5 C 0.009 3.991 6 C -0.227 4.227 7 C -0.039 4.039 8 C -0.237 4.237 9 C 0.350 3.650 10 O -0.438 6.438 11 N -0.332 5.332 12 C 0.075 3.925 13 C -0.005 4.005 14 O -0.385 6.385 15 C -0.153 4.153 16 C -0.154 4.154 17 C 0.016 3.984 18 N -0.325 5.325 19 C -0.392 4.392 20 H 0.088 0.912 21 C -0.237 4.237 22 N -0.573 5.573 23 Si 0.786 3.214 24 H -0.183 1.183 25 H -0.226 1.226 26 H -0.218 1.218 27 C 0.068 3.932 28 H 0.131 0.869 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.223 0.777 32 H 0.195 0.805 33 H 0.165 0.835 34 H 0.236 0.764 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.235 0.765 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.067 0.933 41 H 0.095 0.905 42 H 0.075 0.925 43 H 0.033 0.967 44 H 0.058 0.942 45 H 0.025 0.975 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -17.829 2.475 1.053 18.030 hybrid contribution 1.556 0.527 -0.890 1.869 sum -16.272 3.002 0.162 16.548 Atomic orbital electron populations 1.23107 0.76145 1.04390 1.02521 1.86497 1.23961 1.23875 1.86004 1.19965 0.88177 0.85576 0.89020 1.67532 1.40331 0.99033 1.21140 1.23396 0.93737 0.93948 0.87990 1.22335 0.94580 1.00558 1.05252 1.21959 1.01587 0.90679 0.89669 1.20146 0.91851 0.95445 1.16296 1.18004 0.82092 0.88563 0.76315 1.90664 1.72300 1.29166 1.51626 1.45631 1.04708 1.10264 1.72615 1.21033 0.93154 0.84710 0.93632 1.22534 1.00186 0.93727 0.84078 1.86502 1.92686 1.43249 1.16092 1.21679 1.01744 0.98317 0.93560 1.21788 0.97360 0.98727 0.97574 1.21077 0.93206 0.96373 0.87778 1.44231 1.68490 1.19344 1.00434 1.19453 1.19761 0.89812 1.10169 0.91245 1.25762 0.96680 1.00336 1.00909 1.70187 1.33136 1.31335 1.22684 0.85357 0.77026 0.81172 0.77800 1.18285 1.22636 1.21828 1.20584 0.87723 0.94008 0.90914 0.86870 0.91896 0.91957 0.77702 0.80457 0.83530 0.76359 0.92948 0.92150 0.76455 0.91373 0.91193 0.93281 0.90496 0.92476 0.96676 0.94245 0.97466 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.38 113.37 1.18 1.90 16 2 O -0.30 -9.57 8.58 -66.50 -0.57 -10.14 16 3 C 0.35 10.91 7.51 85.13 0.64 11.54 16 4 N -0.56 -13.95 9.21 -307.99 -2.84 -16.79 16 5 C 0.17 3.00 11.17 84.71 0.95 3.95 16 6 C -0.21 -3.89 10.09 22.32 0.23 -3.66 16 7 C -0.01 -0.34 9.64 22.72 0.22 -0.12 16 8 C -0.23 -7.48 5.90 -19.91 -0.12 -7.60 16 9 C 0.56 21.08 7.18 86.69 0.62 21.70 16 10 O -0.56 -22.92 11.51 16.82 0.19 -22.72 16 11 N -0.68 -25.94 3.88 -425.71 -1.65 -27.60 16 12 C 0.16 6.39 0.45 3.68 0.00 6.39 16 13 C 0.07 2.69 5.61 71.98 0.40 3.09 16 14 O -0.58 -21.17 13.09 -148.98 -1.95 -23.12 16 15 C -0.11 -4.14 4.48 30.62 0.14 -4.00 16 16 C -0.12 -4.05 5.93 30.67 0.18 -3.87 16 17 C 0.14 5.71 6.52 86.36 0.56 6.28 16 18 N -0.60 -28.59 2.88 -699.11 -2.01 -30.60 16 19 C -0.26 -13.43 9.55 84.03 0.80 -12.63 16 20 H 0.07 3.46 7.90 -2.91 -0.02 3.43 16 21 C -0.04 -2.14 4.86 84.86 0.41 -1.72 16 22 N -0.93 -53.17 11.40 21.65 0.25 -52.92 16 23 Si 0.96 42.38 29.59 68.60 2.03 44.41 16 24 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 25 H -0.30 -13.57 7.11 99.48 0.71 -12.87 16 26 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 27 C 0.19 9.12 3.86 86.37 0.33 9.45 16 28 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 30 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 31 H 0.21 1.80 8.06 -2.91 -0.02 1.78 16 32 H 0.18 2.06 8.06 -2.91 -0.02 2.04 16 33 H 0.15 3.84 6.53 -2.91 -0.02 3.82 16 34 H 0.40 15.66 6.57 -92.71 -0.61 15.05 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.76 16 36 H 0.06 2.25 6.19 -2.39 -0.01 2.23 16 37 H 0.39 10.19 9.12 -74.06 -0.68 9.51 16 38 H 0.07 2.53 6.40 -2.39 -0.02 2.51 16 39 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 40 H 0.05 1.81 7.53 -2.39 -0.02 1.79 16 41 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 42 H 0.06 2.24 7.93 -2.39 -0.02 2.23 16 43 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 45 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 46 H 0.06 3.47 6.09 -2.39 -0.01 3.45 16 Total: -1.00 -70.73 368.32 -0.26 -70.99 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: -0.26 Total: 37.80 kcal Atomic # 6 Polarization: 24.15 SS G_CDS: 6.55 Total: 30.69 kcal Atomic # 7 Polarization: -121.66 SS G_CDS: -6.25 Total: -127.91 kcal Atomic # 8 Polarization: -53.65 SS G_CDS: -2.33 Total: -55.98 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Total: -70.73 -0.26 -70.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279510243.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.798 kcal (2) G-P(sol) polarization free energy of solvation -70.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds