Wall clock time and date at job start Tue Mar 31 2020 18:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00093 * 2 1 4 4 C 1.34780 * 119.99957 * 179.97438 * 2 1 3 5 5 O 1.21542 * 119.99754 * 4.84577 * 4 2 1 6 6 C 1.47864 * 119.99719 * 184.84685 * 4 2 1 7 7 C 1.39705 * 120.07109 * 320.64179 * 6 4 2 8 8 C 1.38055 * 120.14356 * 180.02562 * 7 6 4 9 9 C 1.38106 * 120.29640 * 359.97438 * 8 7 6 10 10 C 1.39671 * 120.14205 * 0.02562 * 9 8 7 11 11 C 1.47866 * 120.06946 * 179.97438 * 10 9 8 12 12 O 1.21545 * 119.99510 * 180.02562 * 11 10 9 13 13 N 1.34772 * 120.00073 * 0.02562 * 11 10 9 14 14 C 1.46500 * 119.99633 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.47040 * 179.97438 * 14 13 11 16 16 H 1.09009 * 109.46828 * 295.00146 * 15 14 13 17 17 C 1.52995 * 109.47061 * 175.00297 * 15 14 13 18 18 O 1.42893 * 109.47164 * 304.99701 * 17 15 14 19 19 N 1.46498 * 109.46851 * 54.99809 * 15 14 13 20 20 C 1.36939 * 119.99613 * 204.99769 * 19 15 14 21 21 H 1.07997 * 120.00335 * 0.02562 * 20 19 15 22 22 C 1.38821 * 119.99713 * 180.02562 * 20 19 15 23 23 N 1.31622 * 119.99726 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00058 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47475 * 89.99635 * 24 22 20 26 26 H 1.48499 * 109.47162 * 210.00058 * 24 22 20 27 27 H 1.48508 * 109.46772 * 329.99957 * 24 22 20 28 28 C 1.39289 * 120.07278 * 140.66997 * 6 4 2 29 29 H 1.09001 * 109.47618 * 270.00213 * 1 2 3 30 30 H 1.09003 * 109.47293 * 30.00615 * 1 2 3 31 31 H 1.09001 * 109.47193 * 150.00603 * 1 2 3 32 32 H 1.09006 * 109.46733 * 265.77431 * 3 2 1 33 33 H 1.09000 * 109.47198 * 25.76649 * 3 2 1 34 34 H 1.08995 * 109.47142 * 145.77162 * 3 2 1 35 35 H 1.08002 * 119.93005 * 0.02562 * 7 6 4 36 36 H 1.07994 * 119.85645 * 179.97438 * 8 7 6 37 37 H 1.07996 * 119.92898 * 179.97438 * 9 8 7 38 38 H 0.96997 * 120.00319 * 0.02562 * 13 11 10 39 39 H 1.08998 * 109.47358 * 299.99943 * 14 13 11 40 40 H 1.09000 * 109.47282 * 60.00539 * 14 13 11 41 41 H 1.08998 * 109.47440 * 64.99783 * 17 15 14 42 42 H 1.09005 * 109.46961 * 185.00191 * 17 15 14 43 43 H 0.96698 * 114.00414 * 180.02562 * 18 17 15 44 44 H 0.96997 * 120.00117 * 25.00885 * 19 15 14 45 45 H 0.97003 * 119.99556 * 180.02562 * 23 22 20 46 46 H 1.08008 * 120.14641 * 0.24876 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5343 -2.2179 -0.0879 6 6 3.6135 -1.1694 0.1087 7 6 4.3663 -0.2044 -0.5650 8 6 5.7432 -0.2054 -0.4654 9 6 6.3858 -1.1585 0.3001 10 6 5.6451 -2.1289 0.9788 11 6 6.3348 -3.1490 1.7975 12 8 5.6889 -3.9931 2.3871 13 7 7.6793 -3.1427 1.8899 14 6 8.3624 -4.1530 2.7016 15 6 9.8737 -3.9231 2.6364 16 1 10.2227 -4.0879 1.6170 17 6 10.5791 -4.8983 3.5809 18 8 10.0384 -4.7626 4.8966 19 7 10.1761 -2.5475 3.0397 20 6 11.3218 -1.9409 2.5986 21 1 12.0022 -2.4764 1.9531 22 6 11.6086 -0.6377 2.9811 23 7 10.7796 0.0147 3.7683 24 14 13.1711 0.1901 2.3789 25 1 12.8984 0.8898 1.0977 26 1 13.6323 1.1735 3.3915 27 1 14.2248 -0.8350 2.1685 28 6 4.2552 -2.1339 0.8821 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5137 32 1 2.4447 1.5455 -1.0250 33 1 1.5777 2.0462 0.4467 34 1 3.1150 1.1586 0.5780 35 1 3.8700 0.5440 -1.1650 36 1 6.3206 0.5425 -0.9885 37 1 7.4632 -1.1540 0.3735 38 1 8.1946 -2.4688 1.4197 39 1 8.0270 -4.0758 3.7358 40 1 8.1296 -5.1461 2.3172 41 1 10.4273 -5.9188 3.2292 42 1 11.6461 -4.6762 3.6019 43 1 10.4399 -5.3519 5.5497 44 1 9.5649 -2.0665 3.6193 45 1 10.9798 0.9255 4.0353 46 1 3.6781 -2.8849 1.4013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283817250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:49 Heat of formation + Delta-G solvation = -65.295403 kcal Electronic energy + Delta-G solvation = -28535.724469 eV Core-core repulsion = 24426.439314 eV Total energy + Delta-G solvation = -4109.285155 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.69164 -39.58106 -37.96385 -37.04799 -35.89077 -34.93034 -33.58846 -32.06628 -31.21402 -31.09922 -28.55198 -28.11714 -26.70549 -25.55688 -23.81726 -23.51095 -22.78934 -20.78134 -20.12817 -19.55097 -18.03700 -17.45268 -16.86310 -16.64394 -16.39927 -16.18774 -16.09949 -15.65465 -15.02580 -14.68101 -14.50371 -14.29866 -14.01125 -13.72067 -13.56793 -13.46617 -13.36024 -13.07645 -13.05129 -12.90921 -12.86646 -12.50656 -12.29391 -11.94732 -11.79212 -11.45715 -11.42249 -10.93268 -10.87848 -10.60132 -10.17764 -10.14285 -9.83735 -9.67754 -9.37597 -9.18086 -9.11399 -9.02462 -8.98942 -8.58563 -7.08351 -5.85785 -3.16424 0.62063 1.01476 2.44074 2.66014 3.07931 3.34590 3.41066 3.42927 3.50017 3.85843 4.18544 4.48276 4.56439 4.73042 4.76273 4.89298 4.91272 4.94856 5.04325 5.09364 5.23941 5.28133 5.34473 5.37017 5.45977 5.48795 5.53502 5.57634 5.78436 5.87721 6.00388 6.02714 6.03433 6.13268 6.16410 6.20076 6.35429 6.48686 6.62009 6.72026 6.87250 6.97715 7.58420 7.86828 7.89891 8.19412 8.31061 8.52712 9.43347 9.98471 10.35318 11.35534 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013138 B = 0.002788 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.715000 B =10041.249960 C =11658.473015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.619 5.619 3 C 0.070 3.930 4 C 0.563 3.437 5 O -0.530 6.530 6 C -0.146 4.146 7 C -0.076 4.076 8 C -0.131 4.131 9 C -0.056 4.056 10 C -0.131 4.131 11 C 0.553 3.447 12 O -0.546 6.546 13 N -0.706 5.706 14 C 0.118 3.882 15 C 0.165 3.835 16 H 0.066 0.934 17 C 0.060 3.940 18 O -0.560 6.560 19 N -0.714 5.714 20 C -0.249 4.249 21 H 0.070 0.930 22 C -0.007 4.007 23 N -0.925 5.925 24 Si 0.906 3.094 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.283 1.283 28 C -0.008 4.008 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.139 0.861 38 H 0.408 0.592 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.027 0.973 42 H 0.049 0.951 43 H 0.364 0.636 44 H 0.389 0.611 45 H 0.256 0.744 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.691 1.581 -9.295 16.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.353 5.353 3 C -0.073 4.073 4 C 0.352 3.648 5 O -0.407 6.407 6 C -0.150 4.150 7 C -0.095 4.095 8 C -0.149 4.149 9 C -0.074 4.074 10 C -0.135 4.135 11 C 0.340 3.660 12 O -0.425 6.425 13 N -0.357 5.357 14 C -0.006 4.006 15 C 0.054 3.946 16 H 0.084 0.916 17 C -0.022 4.022 18 O -0.363 6.363 19 N -0.355 5.355 20 C -0.380 4.380 21 H 0.088 0.912 22 C -0.204 4.204 23 N -0.572 5.572 24 Si 0.736 3.264 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.028 4.028 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.154 0.846 36 H 0.155 0.845 37 H 0.157 0.843 38 H 0.246 0.754 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.045 0.955 42 H 0.067 0.933 43 H 0.209 0.791 44 H 0.223 0.777 45 H 0.066 0.934 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.673 0.947 -9.292 17.393 hybrid contribution 1.531 0.740 0.029 1.701 sum -13.142 1.687 -9.263 16.167 Atomic orbital electron populations 1.21675 0.78701 1.03303 1.02092 1.47617 1.07219 1.06294 1.74208 1.22204 0.98197 0.85002 1.01862 1.18369 0.87130 0.83322 0.75990 1.90792 1.69813 1.31045 1.49058 1.19689 0.92675 0.99110 1.03479 1.21758 0.94346 0.96358 0.97015 1.21090 0.94042 0.99595 1.00135 1.21723 1.00869 0.92179 0.92673 1.19995 0.93877 0.98199 1.01390 1.18125 0.82497 0.84277 0.81142 1.90754 1.65875 1.38955 1.46944 1.45901 1.05880 1.33561 1.50370 1.21592 0.92726 0.90288 0.95996 1.20607 0.90938 0.87282 0.95794 0.91603 1.23019 0.98122 0.97076 0.83965 1.86567 1.64877 1.65604 1.19293 1.42388 1.25571 1.08654 1.58924 1.19218 0.98687 0.95556 1.24498 0.91182 1.24748 0.98525 0.97187 0.99966 1.69684 1.37014 1.11823 1.38673 0.86232 0.83054 0.79278 0.77786 1.21682 1.21807 1.20847 1.21239 0.93089 0.94991 0.93474 0.92509 0.91082 0.90278 0.92072 0.90725 0.89918 0.84561 0.84506 0.84321 0.75401 0.90374 0.91897 0.95481 0.93293 0.79120 0.77651 0.93415 0.83898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.64 10.45 59.84 0.63 1.27 16 2 N -0.62 -5.92 3.27 -190.64 -0.62 -6.54 16 3 C 0.07 0.43 8.88 59.85 0.53 0.97 16 4 C 0.56 7.39 7.35 -12.32 -0.09 7.30 16 5 O -0.53 -8.85 16.46 5.33 0.09 -8.76 16 6 C -0.15 -1.85 5.23 -105.02 -0.55 -2.40 16 7 C -0.08 -0.75 7.56 -39.10 -0.30 -1.04 16 8 C -0.13 -1.33 10.02 -39.70 -0.40 -1.73 16 9 C -0.06 -0.71 9.54 -39.10 -0.37 -1.08 16 10 C -0.13 -1.98 5.87 -105.02 -0.62 -2.60 16 11 C 0.55 9.85 7.77 -12.32 -0.10 9.76 16 12 O -0.55 -11.36 16.34 5.33 0.09 -11.27 16 13 N -0.71 -12.12 5.34 -61.24 -0.33 -12.45 16 14 C 0.12 2.10 5.12 -4.04 -0.02 2.08 16 15 C 0.16 3.06 2.84 -67.93 -0.19 2.87 16 16 H 0.07 1.16 8.08 -51.92 -0.42 0.74 16 17 C 0.06 1.02 6.86 37.16 0.25 1.27 16 18 O -0.56 -9.91 12.64 -35.23 -0.45 -10.36 16 19 N -0.71 -16.49 4.51 -53.42 -0.24 -16.73 16 20 C -0.25 -6.32 9.93 -15.05 -0.15 -6.47 16 21 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 23 N -0.92 -26.45 13.06 55.49 0.72 -25.73 16 24 Si 0.91 21.07 29.55 -169.99 -5.02 16.05 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 28 C -0.01 -0.12 9.17 -38.78 -0.36 -0.48 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.34 8.07 -51.93 -0.42 -0.08 16 31 H 0.08 0.71 7.36 -51.93 -0.38 0.33 16 32 H 0.06 0.28 6.90 -51.93 -0.36 -0.08 16 33 H 0.07 0.33 8.04 -51.93 -0.42 -0.09 16 34 H 0.08 0.57 5.80 -51.93 -0.30 0.27 16 35 H 0.14 0.93 5.31 -52.49 -0.28 0.65 16 36 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.14 1.72 6.39 -52.49 -0.34 1.38 16 38 H 0.41 6.80 6.16 -40.82 -0.25 6.55 16 39 H 0.08 1.57 7.40 -51.93 -0.38 1.19 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.36 4.64 9.12 45.56 0.42 5.05 16 44 H 0.39 10.05 7.80 -40.82 -0.32 9.73 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.14 2.32 7.64 -52.48 -0.40 1.92 16 LS Contribution 385.41 15.07 5.81 5.81 Total: -1.00 -34.83 385.41 -7.29 -42.11 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: -5.51 Total: 18.46 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: -1.82 Total: 9.42 kcal Atomic # 7 Polarization: -60.98 SS G_CDS: -0.47 Total: -61.45 kcal Atomic # 8 Polarization: -30.13 SS G_CDS: -0.27 Total: -30.40 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -34.83 -7.29 -42.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283817250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.185 kcal (2) G-P(sol) polarization free energy of solvation -34.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds