Wall clock time and date at job start Tue Mar 31 2020 18:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46504 * 120.00093 * 2 1 4 4 C 1.34780 * 119.99957 * 179.97438 * 2 1 3 5 5 O 1.21542 * 119.99754 * 4.84577 * 4 2 1 6 6 C 1.47864 * 119.99719 * 184.84685 * 4 2 1 7 7 C 1.39705 * 120.07109 * 320.64179 * 6 4 2 8 8 C 1.38055 * 120.14356 * 180.02562 * 7 6 4 9 9 C 1.38106 * 120.29640 * 359.97438 * 8 7 6 10 10 C 1.39671 * 120.14205 * 0.02562 * 9 8 7 11 11 C 1.47866 * 120.06946 * 179.97438 * 10 9 8 12 12 O 1.21545 * 119.99510 * 180.02562 * 11 10 9 13 13 N 1.34772 * 120.00073 * 0.02562 * 11 10 9 14 14 C 1.46500 * 119.99633 * 179.97438 * 13 11 10 15 15 C 1.53008 * 109.47040 * 179.97438 * 14 13 11 16 16 H 1.09009 * 109.46828 * 295.00146 * 15 14 13 17 17 C 1.52995 * 109.47061 * 175.00297 * 15 14 13 18 18 O 1.42893 * 109.47164 * 304.99701 * 17 15 14 19 19 N 1.46498 * 109.46851 * 54.99809 * 15 14 13 20 20 C 1.36939 * 119.99613 * 204.99769 * 19 15 14 21 21 H 1.07997 * 120.00335 * 0.02562 * 20 19 15 22 22 C 1.38821 * 119.99713 * 180.02562 * 20 19 15 23 23 N 1.31622 * 119.99726 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00058 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47475 * 89.99635 * 24 22 20 26 26 H 1.48499 * 109.47162 * 210.00058 * 24 22 20 27 27 H 1.48508 * 109.46772 * 329.99957 * 24 22 20 28 28 C 1.39289 * 120.07278 * 140.66997 * 6 4 2 29 29 H 1.09001 * 109.47618 * 270.00213 * 1 2 3 30 30 H 1.09003 * 109.47293 * 30.00615 * 1 2 3 31 31 H 1.09001 * 109.47193 * 150.00603 * 1 2 3 32 32 H 1.09006 * 109.46733 * 265.77431 * 3 2 1 33 33 H 1.09000 * 109.47198 * 25.76649 * 3 2 1 34 34 H 1.08995 * 109.47142 * 145.77162 * 3 2 1 35 35 H 1.08002 * 119.93005 * 0.02562 * 7 6 4 36 36 H 1.07994 * 119.85645 * 179.97438 * 8 7 6 37 37 H 1.07996 * 119.92898 * 179.97438 * 9 8 7 38 38 H 0.96997 * 120.00319 * 0.02562 * 13 11 10 39 39 H 1.08998 * 109.47358 * 299.99943 * 14 13 11 40 40 H 1.09000 * 109.47282 * 60.00539 * 14 13 11 41 41 H 1.08998 * 109.47440 * 64.99783 * 17 15 14 42 42 H 1.09005 * 109.46961 * 185.00191 * 17 15 14 43 43 H 0.96698 * 114.00414 * 180.02562 * 18 17 15 44 44 H 0.96997 * 120.00117 * 25.00885 * 19 15 14 45 45 H 0.97003 * 119.99556 * 180.02562 * 23 22 20 46 46 H 1.08008 * 120.14641 * 0.24876 * 28 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1389 -1.1672 0.0005 5 8 1.5343 -2.2179 -0.0879 6 6 3.6135 -1.1694 0.1087 7 6 4.3663 -0.2044 -0.5650 8 6 5.7432 -0.2054 -0.4654 9 6 6.3858 -1.1585 0.3001 10 6 5.6451 -2.1289 0.9788 11 6 6.3348 -3.1490 1.7975 12 8 5.6889 -3.9931 2.3871 13 7 7.6793 -3.1427 1.8899 14 6 8.3624 -4.1530 2.7016 15 6 9.8737 -3.9231 2.6364 16 1 10.2227 -4.0879 1.6170 17 6 10.5791 -4.8983 3.5809 18 8 10.0384 -4.7626 4.8966 19 7 10.1761 -2.5475 3.0397 20 6 11.3218 -1.9409 2.5986 21 1 12.0022 -2.4764 1.9531 22 6 11.6086 -0.6377 2.9811 23 7 10.7796 0.0147 3.7683 24 14 13.1711 0.1901 2.3789 25 1 12.8984 0.8898 1.0977 26 1 13.6323 1.1735 3.3915 27 1 14.2248 -0.8350 2.1685 28 6 4.2552 -2.1339 0.8821 29 1 -0.3634 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5137 32 1 2.4447 1.5455 -1.0250 33 1 1.5777 2.0462 0.4467 34 1 3.1150 1.1586 0.5780 35 1 3.8700 0.5440 -1.1650 36 1 6.3206 0.5425 -0.9885 37 1 7.4632 -1.1540 0.3735 38 1 8.1946 -2.4688 1.4197 39 1 8.0270 -4.0758 3.7358 40 1 8.1296 -5.1461 2.3172 41 1 10.4273 -5.9188 3.2292 42 1 11.6461 -4.6762 3.6019 43 1 10.4399 -5.3519 5.5497 44 1 9.5649 -2.0665 3.6193 45 1 10.9798 0.9255 4.0353 46 1 3.6781 -2.8849 1.4013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283817250.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:48 Heat of formation + Delta-G solvation = -93.369213 kcal Electronic energy + Delta-G solvation = -28536.941841 eV Core-core repulsion = 24426.439314 eV Total energy + Delta-G solvation = -4110.502527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70979 -40.82870 -39.10956 -38.48860 -36.74750 -36.42348 -35.27696 -33.45256 -32.51542 -32.19585 -30.08872 -28.91353 -27.48861 -26.87886 -25.63942 -24.61736 -23.83474 -21.90996 -21.62076 -20.65027 -19.48614 -18.87466 -18.16155 -17.82202 -17.51872 -17.21987 -17.10860 -16.82962 -16.45337 -16.22178 -15.68212 -15.52743 -15.29432 -15.06361 -14.84745 -14.67394 -14.49769 -14.35811 -14.26687 -13.81439 -13.64582 -13.60544 -13.31625 -13.02645 -12.97010 -12.74546 -12.67603 -12.60970 -12.39007 -12.24513 -11.88740 -11.71694 -11.25944 -11.08073 -10.91017 -10.71588 -10.25690 -10.15861 -9.92184 -9.74724 -8.99003 -7.87057 -5.16894 -0.38019 -0.02483 1.43708 1.52655 1.54360 1.61647 1.78897 1.96565 2.19220 2.60147 2.75047 3.34123 3.44265 3.59121 3.62782 3.79356 3.89471 3.95205 3.99607 4.07850 4.24632 4.29569 4.38932 4.43267 4.47175 4.54755 4.57458 4.62402 4.74225 4.82756 4.85452 4.90392 4.91697 4.99503 5.11557 5.17356 5.21860 5.24216 5.41325 5.43214 5.58055 5.69715 6.17260 6.31005 6.50313 6.95201 7.06528 7.13202 7.39485 8.10220 8.36894 9.35458 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013138 B = 0.002788 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.715000 B =10041.249960 C =11658.473015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.059 3.941 4 C 0.554 3.446 5 O -0.581 6.581 6 C -0.151 4.151 7 C -0.052 4.052 8 C -0.118 4.118 9 C -0.058 4.058 10 C -0.151 4.151 11 C 0.549 3.451 12 O -0.586 6.586 13 N -0.701 5.701 14 C 0.128 3.872 15 C 0.162 3.838 16 H 0.083 0.917 17 C 0.064 3.936 18 O -0.585 6.585 19 N -0.722 5.722 20 C -0.237 4.237 21 H 0.081 0.919 22 C -0.068 4.068 23 N -0.965 5.965 24 Si 0.968 3.032 25 H -0.283 1.283 26 H -0.305 1.305 27 H -0.273 1.273 28 C -0.027 4.027 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.059 0.941 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.178 0.822 36 H 0.176 0.824 37 H 0.141 0.859 38 H 0.412 0.588 39 H 0.051 0.949 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.039 0.961 43 H 0.385 0.615 44 H 0.372 0.628 45 H 0.249 0.751 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.116 3.420 -11.627 17.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.344 5.344 3 C -0.082 4.082 4 C 0.343 3.657 5 O -0.462 6.462 6 C -0.154 4.154 7 C -0.070 4.070 8 C -0.136 4.136 9 C -0.077 4.077 10 C -0.154 4.154 11 C 0.338 3.662 12 O -0.469 6.469 13 N -0.352 5.352 14 C 0.003 3.997 15 C 0.053 3.947 16 H 0.100 0.900 17 C -0.017 4.017 18 O -0.391 6.391 19 N -0.362 5.362 20 C -0.369 4.369 21 H 0.099 0.901 22 C -0.261 4.261 23 N -0.615 5.615 24 Si 0.798 3.202 25 H -0.210 1.210 26 H -0.233 1.233 27 H -0.199 1.199 28 C -0.047 4.047 29 H 0.077 0.923 30 H 0.127 0.873 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.195 0.805 36 H 0.193 0.807 37 H 0.158 0.842 38 H 0.250 0.750 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.233 0.767 44 H 0.204 0.796 45 H 0.057 0.943 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.070 2.780 -11.649 18.477 hybrid contribution 1.270 0.159 0.747 1.482 sum -12.801 2.939 -10.902 17.069 Atomic orbital electron populations 1.21851 0.77594 1.04198 1.02587 1.47782 1.08158 1.06380 1.72047 1.22520 0.98181 0.83719 1.03794 1.18547 0.87361 0.83795 0.75953 1.90761 1.70642 1.33034 1.51794 1.19756 0.92856 0.99319 1.03498 1.22177 0.94135 0.95417 0.95257 1.21512 0.94358 0.98987 0.98709 1.21838 1.00926 0.92177 0.92773 1.19773 0.93874 0.98931 1.02848 1.18616 0.82476 0.84335 0.80798 1.90718 1.66589 1.40764 1.48799 1.45853 1.05807 1.33467 1.50034 1.21447 0.92253 0.91217 0.94762 1.20848 0.91403 0.85539 0.96947 0.89970 1.22884 0.96881 0.98396 0.83529 1.86523 1.65553 1.66851 1.20193 1.42480 1.24739 1.10350 1.58624 1.19599 0.98846 0.95400 1.23022 0.90071 1.25459 1.01392 0.98188 1.01042 1.69849 1.38953 1.11771 1.40915 0.85231 0.79981 0.78063 0.76928 1.20967 1.23266 1.19856 1.21073 0.93040 0.95722 0.94903 0.92252 0.87347 0.92178 0.89214 0.88264 0.90560 0.80508 0.80699 0.84155 0.74985 0.93041 0.90400 0.91735 0.94303 0.76677 0.79584 0.94255 0.86843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.08 10.45 127.77 1.34 2.42 16 2 N -0.61 -10.53 3.27 -875.33 -2.87 -13.40 16 3 C 0.06 0.50 8.88 127.77 1.13 1.63 16 4 C 0.55 14.55 7.35 86.79 0.64 15.19 16 5 O -0.58 -20.44 16.46 -3.85 -0.06 -20.50 16 6 C -0.15 -3.76 5.23 -20.12 -0.11 -3.86 16 7 C -0.05 -0.85 7.56 22.58 0.17 -0.68 16 8 C -0.12 -2.02 10.02 22.20 0.22 -1.79 16 9 C -0.06 -1.42 9.54 22.58 0.22 -1.21 16 10 C -0.15 -4.72 5.87 -20.12 -0.12 -4.84 16 11 C 0.55 20.57 7.77 86.79 0.67 21.24 16 12 O -0.59 -26.03 16.34 -3.86 -0.06 -26.10 16 13 N -0.70 -24.63 5.34 -465.95 -2.49 -27.12 16 14 C 0.13 4.58 5.12 86.38 0.44 5.02 16 15 C 0.16 5.87 2.84 44.99 0.13 6.00 16 16 H 0.08 2.73 8.08 -2.38 -0.02 2.71 16 17 C 0.06 2.08 6.86 71.98 0.49 2.57 16 18 O -0.58 -20.33 12.64 -148.98 -1.88 -22.21 16 19 N -0.72 -33.30 4.51 -322.92 -1.46 -34.76 16 20 C -0.24 -11.86 9.93 84.04 0.83 -11.03 16 21 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 22 C -0.07 -3.62 5.50 84.86 0.47 -3.15 16 23 N -0.96 -55.92 13.06 21.65 0.28 -55.64 16 24 Si 0.97 43.01 29.55 68.60 2.03 45.04 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 26 H -0.31 -14.14 7.11 99.48 0.71 -13.43 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 C -0.03 -0.86 9.17 22.79 0.21 -0.65 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.11 0.66 8.07 -2.39 -0.02 0.64 16 31 H 0.06 1.07 7.36 -2.39 -0.02 1.05 16 32 H 0.09 0.31 6.90 -2.38 -0.02 0.29 16 33 H 0.10 0.42 8.04 -2.39 -0.02 0.40 16 34 H 0.08 0.79 5.80 -2.39 -0.01 0.77 16 35 H 0.18 1.46 5.31 -2.91 -0.02 1.44 16 36 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 37 H 0.14 3.34 6.39 -2.91 -0.02 3.33 16 38 H 0.41 13.83 6.16 -92.71 -0.57 13.26 16 39 H 0.05 2.14 7.40 -2.39 -0.02 2.12 16 40 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 41 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.39 9.41 9.12 -74.06 -0.68 8.73 16 44 H 0.37 19.63 7.80 -92.71 -0.72 18.91 16 45 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 46 H 0.11 4.15 7.64 -2.91 -0.02 4.13 16 Total: -1.00 -79.90 385.41 -0.69 -80.59 By element: Atomic # 1 Polarization: 48.15 SS G_CDS: -0.92 Total: 47.23 kcal Atomic # 6 Polarization: 20.12 SS G_CDS: 6.74 Total: 26.86 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -6.53 Total: -130.91 kcal Atomic # 8 Polarization: -66.80 SS G_CDS: -2.01 Total: -68.81 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -79.90 -0.69 -80.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283817250.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.776 kcal (2) G-P(sol) polarization free energy of solvation -79.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds