Wall clock time and date at job start Tue Mar 31 2020 18:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36936 * 119.99728 * 2 1 4 4 H 1.07996 * 120.00215 * 203.05017 * 3 2 1 5 5 C 1.38818 * 119.99792 * 23.04647 * 3 2 1 6 6 N 1.31611 * 120.00124 * 12.93653 * 5 3 2 7 7 Si 1.86808 * 119.99660 * 192.93977 * 5 3 2 8 8 H 1.48494 * 109.47353 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47124 * 120.00268 * 7 5 3 10 10 H 1.48501 * 109.46628 * 239.99615 * 7 5 3 11 11 C 1.46492 * 120.00288 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47257 * 89.99857 * 11 2 1 13 13 C 1.53003 * 109.47416 * 179.97438 * 12 11 2 14 14 N 1.46503 * 109.47348 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99875 * 180.02562 * 14 13 12 16 16 O 1.21581 * 120.00273 * 359.97438 * 15 14 13 17 17 C 1.47602 * 119.99695 * 180.02562 * 15 14 13 18 18 C 1.39738 * 120.08496 * 179.97438 * 17 15 14 19 19 C 1.37704 * 119.90587 * 180.30022 * 18 17 15 20 20 C 1.38993 * 120.08936 * 359.44832 * 19 18 17 21 21 O 1.35712 * 119.91176 * 180.25926 * 20 19 18 22 22 C 1.42904 * 117.00105 * 0.29202 * 21 20 19 23 23 C 1.50694 * 109.47289 * 180.02562 * 22 21 20 24 24 N 1.34779 * 120.00219 * 180.02562 * 23 22 21 25 25 O 1.21285 * 120.00155 * 0.02562 * 23 22 21 26 26 C 1.38992 * 120.17907 * 0.55495 * 20 19 18 27 27 C 1.37703 * 120.08806 * 359.72226 * 26 20 19 28 28 H 1.09000 * 109.46824 * 275.11816 * 1 2 3 29 29 H 1.08993 * 109.47658 * 35.12154 * 1 2 3 30 30 H 1.08999 * 109.46433 * 155.12635 * 1 2 3 31 31 H 0.97002 * 120.00164 * 180.02562 * 6 5 3 32 32 H 1.09005 * 109.47366 * 329.99814 * 11 2 1 33 33 H 1.09000 * 109.47134 * 209.99894 * 11 2 1 34 34 H 1.09004 * 109.47358 * 60.00084 * 12 11 2 35 35 H 1.08998 * 109.47487 * 299.99732 * 12 11 2 36 36 H 1.09000 * 109.46834 * 60.00583 * 13 12 11 37 37 H 1.09000 * 109.47377 * 300.00284 * 13 12 11 38 38 H 0.96999 * 119.99971 * 0.02562 * 14 13 12 39 39 H 1.07994 * 120.04734 * 0.02562 * 18 17 15 40 40 H 1.07997 * 119.95024 * 179.69731 * 19 18 17 41 41 H 1.09000 * 109.46858 * 300.00508 * 22 21 20 42 42 H 1.08997 * 109.46744 * 60.00168 * 22 21 20 43 43 H 0.97005 * 119.99858 * 0.02562 * 24 23 22 44 44 H 0.96991 * 120.00371 * 179.97438 * 24 23 22 45 45 H 1.07995 * 119.95736 * 179.70774 * 26 20 19 46 46 H 1.08004 * 120.04735 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2234 -0.3662 5 6 1.5386 2.3401 0.4706 6 7 0.4118 2.2596 1.1460 7 14 2.3156 4.0075 0.1453 8 1 3.5696 3.8266 -0.6292 9 1 1.3712 4.8507 -0.6307 10 1 2.6238 4.6705 1.4378 11 6 2.1976 -1.2686 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 6 3.2182 -3.0344 -1.4438 14 7 3.4618 -3.4570 -2.8253 15 6 4.1243 -4.6045 -3.0720 16 8 4.5202 -5.2886 -2.1482 17 6 4.3703 -5.0299 -4.4638 18 6 5.0574 -6.2190 -4.7218 19 6 5.2903 -6.6093 -6.0216 20 6 4.8328 -5.8281 -7.0763 21 8 5.0597 -6.2189 -8.3560 22 6 5.7685 -7.4455 -8.5439 23 6 5.9257 -7.7141 -10.0183 24 7 6.5665 -8.8236 -10.4366 25 8 5.4756 -6.9320 -10.8286 26 6 4.1490 -4.6447 -6.8240 27 6 3.9170 -4.2445 -5.5270 28 1 -0.3633 0.0917 1.0236 29 1 -0.3634 0.8405 -0.5912 30 1 -0.3632 -0.9324 -0.4323 31 1 -0.0154 3.0662 1.4745 32 1 1.6085 -2.0286 0.5130 33 1 3.1500 -1.1385 0.5133 34 1 3.0416 -0.9498 -1.9568 35 1 1.5002 -1.8399 -1.9571 36 1 2.6295 -3.7945 -0.9303 37 1 4.1706 -2.9038 -0.9301 38 1 3.1463 -2.9110 -3.5623 39 1 5.4093 -6.8288 -3.9028 40 1 5.8255 -7.5257 -6.2218 41 1 6.7527 -7.3708 -8.0815 42 1 5.2114 -8.2612 -8.0830 43 1 6.9262 -9.4494 -9.7886 44 1 6.6674 -8.9967 -11.3856 45 1 3.7992 -4.0381 -7.6462 46 1 3.3859 -3.3246 -5.3316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316835771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:36 Heat of formation + Delta-G solvation = -63.490044 kcal Electronic energy + Delta-G solvation = -26893.941968 eV Core-core repulsion = 22784.735099 eV Total energy + Delta-G solvation = -4109.206869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.01830 -40.07848 -39.26482 -37.34343 -36.23721 -34.80152 -34.40400 -32.23207 -31.57079 -30.98355 -29.70634 -28.79731 -25.98230 -25.45869 -23.61478 -23.29155 -21.85924 -21.42959 -20.73045 -20.03701 -19.03009 -18.35658 -17.68061 -16.99382 -16.98851 -16.71206 -16.30102 -15.59180 -15.47048 -15.22213 -14.86908 -14.81956 -14.33834 -14.18070 -14.13866 -13.88852 -13.40500 -13.17459 -13.02098 -12.85561 -12.81307 -12.61686 -11.76163 -11.56089 -11.43139 -11.33325 -11.01579 -10.79802 -10.78218 -10.60598 -10.47000 -10.41315 -10.18245 -9.98235 -9.83269 -9.78610 -9.50219 -9.04599 -8.63646 -8.53743 -6.72598 -5.70652 -3.17743 0.57142 0.93134 1.89634 2.04595 2.69475 3.16786 3.20178 3.38497 3.45774 3.47709 3.59116 4.02437 4.23809 4.33357 4.36687 4.42106 4.51029 4.63136 4.83425 4.92927 5.11282 5.24579 5.44612 5.46408 5.58491 5.72160 5.80683 5.85115 5.89977 6.00876 6.03626 6.11258 6.16108 6.20141 6.42483 6.52762 6.56358 6.76100 6.77429 6.80920 6.94932 7.38965 7.52102 7.53552 7.75044 7.82535 8.20200 8.41869 9.25755 9.89429 10.38431 11.34159 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021498 B = 0.001596 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.153701 B =17538.824222 C =18304.248130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.903 3.097 8 H -0.278 1.278 9 H -0.290 1.290 10 H -0.290 1.290 11 C 0.155 3.845 12 C -0.151 4.151 13 C 0.120 3.880 14 N -0.722 5.722 15 C 0.557 3.443 16 O -0.544 6.544 17 C -0.168 4.168 18 C -0.018 4.018 19 C -0.220 4.220 20 C 0.150 3.850 21 O -0.287 6.287 22 C 0.037 3.963 23 C 0.520 3.480 24 N -0.851 5.851 25 O -0.516 6.516 26 C -0.153 4.153 27 C -0.044 4.044 28 H 0.031 0.969 29 H 0.039 0.961 30 H -0.003 1.003 31 H 0.251 0.749 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.067 0.933 38 H 0.399 0.601 39 H 0.141 0.859 40 H 0.134 0.866 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.404 0.596 44 H 0.410 0.590 45 H 0.140 0.860 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.621 -24.745 -20.576 34.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.326 5.326 3 C -0.385 4.385 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.553 5.553 7 Si 0.733 3.267 8 H -0.203 1.203 9 H -0.217 1.217 10 H -0.217 1.217 11 C 0.027 3.973 12 C -0.192 4.192 13 C -0.003 4.003 14 N -0.373 5.373 15 C 0.344 3.656 16 O -0.423 6.423 17 C -0.172 4.172 18 C -0.037 4.037 19 C -0.239 4.239 20 C 0.103 3.897 21 O -0.199 6.199 22 C -0.042 4.042 23 C 0.303 3.697 24 N -0.417 5.417 25 O -0.390 6.390 26 C -0.171 4.171 27 C -0.062 4.062 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.016 0.984 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.234 0.766 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.116 0.884 42 H 0.116 0.884 43 H 0.232 0.768 44 H 0.242 0.758 45 H 0.158 0.842 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 11.345 -24.322 -20.358 33.686 hybrid contribution 0.520 0.647 -0.490 0.964 sum 11.865 -23.675 -20.848 33.703 Atomic orbital electron populations 1.20784 0.82676 0.95295 0.99462 1.43895 1.01842 1.00673 1.86142 1.19231 0.98264 0.85624 1.35331 0.91382 1.25030 0.97903 0.98541 0.98233 1.70078 1.19470 1.27044 1.38687 0.86202 0.78546 0.84395 0.77507 1.20329 1.21655 1.21739 1.20594 0.96375 0.88525 0.91808 1.22544 0.99473 0.94195 1.02992 1.21491 1.00530 0.97043 0.81255 1.46074 1.57609 1.23548 1.10037 1.18140 0.78031 0.81069 0.88312 1.90768 1.51650 1.54199 1.45728 1.19959 1.05855 0.98191 0.93176 1.21054 0.92466 0.93903 0.96285 1.21185 1.07730 1.02394 0.92600 1.19267 0.94108 0.93771 0.82508 1.86124 1.71500 1.38290 1.23954 1.22499 0.98903 0.87863 0.94936 1.20040 0.77985 0.81527 0.90192 1.43652 1.60720 1.24918 1.12441 1.90837 1.46776 1.45811 1.55591 1.20376 1.03155 0.96029 0.97549 1.21193 0.95616 0.98327 0.91102 0.95106 0.94185 0.98411 0.93828 0.94389 0.93254 0.91511 0.92184 0.91620 0.91455 0.76571 0.84161 0.84854 0.88438 0.88434 0.76770 0.75835 0.84177 0.84509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 8.98 59.85 0.54 4.54 16 2 N -0.60 -15.08 2.92 -181.13 -0.53 -15.61 16 3 C -0.25 -6.98 9.65 -15.06 -0.15 -7.13 16 4 H 0.07 1.82 7.86 -52.49 -0.41 1.41 16 5 C 0.00 0.03 5.10 -17.43 -0.09 -0.06 16 6 N -0.91 -26.65 10.71 55.49 0.59 -26.05 16 7 Si 0.90 21.87 29.57 -169.99 -5.03 16.84 16 8 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 9 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 C 0.16 3.11 5.64 -4.05 -0.02 3.09 16 12 C -0.15 -2.46 5.65 -26.73 -0.15 -2.61 16 13 C 0.12 1.73 5.67 -4.04 -0.02 1.70 16 14 N -0.72 -9.06 5.51 -61.32 -0.34 -9.40 16 15 C 0.56 7.57 7.76 -12.44 -0.10 7.47 16 16 O -0.54 -9.23 16.34 5.29 0.09 -9.14 16 17 C -0.17 -1.83 5.88 -104.96 -0.62 -2.44 16 18 C -0.02 -0.17 9.58 -39.22 -0.38 -0.55 16 19 C -0.22 -1.64 9.01 -39.50 -0.36 -1.99 16 20 C 0.15 1.30 6.70 -39.02 -0.26 1.04 16 21 O -0.29 -2.56 9.66 -38.75 -0.37 -2.94 16 22 C 0.04 0.17 5.21 36.00 0.19 0.36 16 23 C 0.52 3.27 8.18 -10.99 -0.09 3.18 16 24 N -0.85 -1.45 8.87 31.22 0.28 -1.17 16 25 O -0.52 -6.14 17.34 -14.36 -0.25 -6.39 16 26 C -0.15 -1.35 9.97 -39.50 -0.39 -1.74 16 27 C -0.04 -0.39 9.53 -39.22 -0.37 -0.77 16 28 H 0.03 0.82 7.34 -51.93 -0.38 0.44 16 29 H 0.04 1.05 7.34 -51.93 -0.38 0.67 16 30 H 0.00 -0.06 8.03 -51.93 -0.42 -0.47 16 31 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 32 H 0.04 0.72 8.07 -51.93 -0.42 0.30 16 33 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.40 4.06 6.49 -40.82 -0.27 3.79 16 39 H 0.14 1.30 7.64 -52.49 -0.40 0.90 16 40 H 0.13 0.54 6.28 -52.49 -0.33 0.21 16 41 H 0.10 0.20 7.64 -51.93 -0.40 -0.19 16 42 H 0.10 0.20 7.66 -51.93 -0.40 -0.20 16 43 H 0.40 -0.71 8.83 -40.82 -0.36 -1.07 16 44 H 0.41 0.49 8.93 -40.82 -0.36 0.13 16 45 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.14 0.96 6.39 -52.48 -0.34 0.62 16 LS Contribution 390.26 15.07 5.88 5.88 Total: -1.00 -37.90 390.26 -8.48 -46.38 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -6.53 Total: -2.49 kcal Atomic # 6 Polarization: 6.36 SS G_CDS: -2.27 Total: 4.09 kcal Atomic # 7 Polarization: -52.24 SS G_CDS: 0.00 Total: -52.23 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -0.54 Total: -18.47 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -37.90 -8.48 -46.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316835771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.113 kcal (2) G-P(sol) polarization free energy of solvation -37.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds