Wall clock time and date at job start Tue Mar 31 2020 18:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36936 * 119.99728 * 2 1 4 4 H 1.07996 * 120.00215 * 203.05017 * 3 2 1 5 5 C 1.38818 * 119.99792 * 23.04647 * 3 2 1 6 6 N 1.31611 * 120.00124 * 12.93653 * 5 3 2 7 7 Si 1.86808 * 119.99660 * 192.93977 * 5 3 2 8 8 H 1.48494 * 109.47353 * 359.97438 * 7 5 3 9 9 H 1.48496 * 109.47124 * 120.00268 * 7 5 3 10 10 H 1.48501 * 109.46628 * 239.99615 * 7 5 3 11 11 C 1.46492 * 120.00288 * 180.02562 * 2 1 3 12 12 C 1.52996 * 109.47257 * 89.99857 * 11 2 1 13 13 C 1.53003 * 109.47416 * 179.97438 * 12 11 2 14 14 N 1.46503 * 109.47348 * 179.97438 * 13 12 11 15 15 C 1.34777 * 119.99875 * 180.02562 * 14 13 12 16 16 O 1.21581 * 120.00273 * 359.97438 * 15 14 13 17 17 C 1.47602 * 119.99695 * 180.02562 * 15 14 13 18 18 C 1.39738 * 120.08496 * 179.97438 * 17 15 14 19 19 C 1.37704 * 119.90587 * 180.30022 * 18 17 15 20 20 C 1.38993 * 120.08936 * 359.44832 * 19 18 17 21 21 O 1.35712 * 119.91176 * 180.25926 * 20 19 18 22 22 C 1.42904 * 117.00105 * 0.29202 * 21 20 19 23 23 C 1.50694 * 109.47289 * 180.02562 * 22 21 20 24 24 N 1.34779 * 120.00219 * 180.02562 * 23 22 21 25 25 O 1.21285 * 120.00155 * 0.02562 * 23 22 21 26 26 C 1.38992 * 120.17907 * 0.55495 * 20 19 18 27 27 C 1.37703 * 120.08806 * 359.72226 * 26 20 19 28 28 H 1.09000 * 109.46824 * 275.11816 * 1 2 3 29 29 H 1.08993 * 109.47658 * 35.12154 * 1 2 3 30 30 H 1.08999 * 109.46433 * 155.12635 * 1 2 3 31 31 H 0.97002 * 120.00164 * 180.02562 * 6 5 3 32 32 H 1.09005 * 109.47366 * 329.99814 * 11 2 1 33 33 H 1.09000 * 109.47134 * 209.99894 * 11 2 1 34 34 H 1.09004 * 109.47358 * 60.00084 * 12 11 2 35 35 H 1.08998 * 109.47487 * 299.99732 * 12 11 2 36 36 H 1.09000 * 109.46834 * 60.00583 * 13 12 11 37 37 H 1.09000 * 109.47377 * 300.00284 * 13 12 11 38 38 H 0.96999 * 119.99971 * 0.02562 * 14 13 12 39 39 H 1.07994 * 120.04734 * 0.02562 * 18 17 15 40 40 H 1.07997 * 119.95024 * 179.69731 * 19 18 17 41 41 H 1.09000 * 109.46858 * 300.00508 * 22 21 20 42 42 H 1.08997 * 109.46744 * 60.00168 * 22 21 20 43 43 H 0.97005 * 119.99858 * 0.02562 * 24 23 22 44 44 H 0.96991 * 120.00371 * 179.97438 * 24 23 22 45 45 H 1.07995 * 119.95736 * 179.70774 * 26 20 19 46 46 H 1.08004 * 120.04735 * 179.97438 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2234 -0.3662 5 6 1.5386 2.3401 0.4706 6 7 0.4118 2.2596 1.1460 7 14 2.3156 4.0075 0.1453 8 1 3.5696 3.8266 -0.6292 9 1 1.3712 4.8507 -0.6307 10 1 2.6238 4.6705 1.4378 11 6 2.1976 -1.2686 -0.0006 12 6 2.4526 -1.7097 -1.4432 13 6 3.2182 -3.0344 -1.4438 14 7 3.4618 -3.4570 -2.8253 15 6 4.1243 -4.6045 -3.0720 16 8 4.5202 -5.2886 -2.1482 17 6 4.3703 -5.0299 -4.4638 18 6 5.0574 -6.2190 -4.7218 19 6 5.2903 -6.6093 -6.0216 20 6 4.8328 -5.8281 -7.0763 21 8 5.0597 -6.2189 -8.3560 22 6 5.7685 -7.4455 -8.5439 23 6 5.9257 -7.7141 -10.0183 24 7 6.5665 -8.8236 -10.4366 25 8 5.4756 -6.9320 -10.8286 26 6 4.1490 -4.6447 -6.8240 27 6 3.9170 -4.2445 -5.5270 28 1 -0.3633 0.0917 1.0236 29 1 -0.3634 0.8405 -0.5912 30 1 -0.3632 -0.9324 -0.4323 31 1 -0.0154 3.0662 1.4745 32 1 1.6085 -2.0286 0.5130 33 1 3.1500 -1.1385 0.5133 34 1 3.0416 -0.9498 -1.9568 35 1 1.5002 -1.8399 -1.9571 36 1 2.6295 -3.7945 -0.9303 37 1 4.1706 -2.9038 -0.9301 38 1 3.1463 -2.9110 -3.5623 39 1 5.4093 -6.8288 -3.9028 40 1 5.8255 -7.5257 -6.2218 41 1 6.7527 -7.3708 -8.0815 42 1 5.2114 -8.2612 -8.0830 43 1 6.9262 -9.4494 -9.7886 44 1 6.6674 -8.9967 -11.3856 45 1 3.7992 -4.0381 -7.6462 46 1 3.3859 -3.3246 -5.3316 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316835771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:35 Heat of formation + Delta-G solvation = -91.850929 kcal Electronic energy + Delta-G solvation = -26895.171788 eV Core-core repulsion = 22784.735099 eV Total energy + Delta-G solvation = -4110.436689 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.64338 -40.86173 -39.96891 -38.14074 -37.81356 -36.20941 -34.79832 -33.84418 -32.28646 -32.13289 -30.94476 -29.30723 -27.93521 -27.00549 -24.60337 -24.00869 -23.22793 -22.19411 -21.83889 -21.20417 -19.60505 -18.86576 -18.70098 -18.41061 -17.48401 -17.41864 -17.22438 -16.81045 -16.67345 -16.30899 -15.88856 -15.65749 -15.41561 -15.33211 -14.92262 -14.86803 -14.65664 -14.55771 -14.44418 -13.82074 -13.55501 -13.50368 -13.31588 -13.00926 -12.80942 -12.61663 -12.49023 -12.27202 -12.11615 -12.05259 -11.96989 -11.81819 -11.46260 -11.13928 -11.09049 -10.75403 -10.62712 -10.15837 -10.11801 -9.32737 -8.75928 -7.80947 -5.30328 -0.16184 0.29742 1.47116 1.47302 1.48512 1.58786 1.63508 1.81512 2.17223 2.52970 2.80619 2.81668 3.32713 3.64925 3.66732 3.74976 3.82164 3.89658 4.06803 4.11080 4.14437 4.19305 4.28540 4.37864 4.47519 4.52753 4.68147 4.81517 4.88215 4.94229 4.97137 5.08560 5.19064 5.26942 5.30912 5.31383 5.43026 5.52373 5.54709 5.65925 5.73343 5.81488 6.19606 6.35037 6.40688 6.53794 7.17392 7.19225 7.24997 7.89807 8.33367 9.22350 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021498 B = 0.001596 C = 0.001529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.153701 B =17538.824222 C =18304.248130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.620 5.620 3 C -0.260 4.260 4 H 0.072 0.928 5 C -0.055 4.055 6 N -0.941 5.941 7 Si 0.967 3.033 8 H -0.265 1.265 9 H -0.291 1.291 10 H -0.294 1.294 11 C 0.150 3.850 12 C -0.129 4.129 13 C 0.132 3.868 14 N -0.715 5.715 15 C 0.557 3.443 16 O -0.585 6.585 17 C -0.190 4.190 18 C -0.025 4.025 19 C -0.209 4.209 20 C 0.151 3.849 21 O -0.312 6.312 22 C 0.028 3.972 23 C 0.516 3.484 24 N -0.826 5.826 25 O -0.585 6.585 26 C -0.166 4.166 27 C -0.039 4.039 28 H 0.002 0.998 29 H 0.014 0.986 30 H 0.033 0.967 31 H 0.247 0.753 32 H 0.050 0.950 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.412 0.588 39 H 0.139 0.861 40 H 0.172 0.828 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.424 0.576 44 H 0.414 0.586 45 H 0.146 0.854 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.096 -26.508 -22.088 36.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.344 5.344 3 C -0.390 4.390 4 H 0.090 0.910 5 C -0.250 4.250 6 N -0.588 5.588 7 Si 0.796 3.204 8 H -0.189 1.189 9 H -0.218 1.218 10 H -0.221 1.221 11 C 0.023 3.977 12 C -0.169 4.169 13 C 0.007 3.993 14 N -0.367 5.367 15 C 0.346 3.654 16 O -0.467 6.467 17 C -0.193 4.193 18 C -0.044 4.044 19 C -0.227 4.227 20 C 0.105 3.895 21 O -0.224 6.224 22 C -0.049 4.049 23 C 0.300 3.700 24 N -0.393 5.393 25 O -0.464 6.464 26 C -0.184 4.184 27 C -0.058 4.058 28 H 0.021 0.979 29 H 0.033 0.967 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.249 0.751 39 H 0.157 0.843 40 H 0.189 0.811 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.256 0.744 44 H 0.246 0.754 45 H 0.164 0.836 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 12.871 -26.163 -21.894 36.462 hybrid contribution 0.134 1.018 -0.096 1.031 sum 13.005 -25.145 -21.990 35.846 Atomic orbital electron populations 1.20533 0.82845 0.95962 0.97550 1.44150 1.02119 1.01737 1.86365 1.19571 0.98476 0.86747 1.34238 0.91003 1.25800 0.98671 1.01919 0.98630 1.70241 1.20939 1.27479 1.40141 0.85196 0.78048 0.80109 0.77053 1.18948 1.21838 1.22094 1.20780 0.95767 0.86901 0.94242 1.22171 0.99933 0.94791 1.00013 1.21212 0.99799 0.95898 0.82354 1.45929 1.57422 1.23640 1.09661 1.18552 0.77124 0.80554 0.89153 1.90740 1.53407 1.55390 1.47144 1.19840 1.08054 0.99617 0.91814 1.21178 0.92420 0.93547 0.97276 1.21452 1.06894 1.03252 0.91101 1.19406 0.93551 0.93702 0.82885 1.86103 1.72059 1.40269 1.23967 1.22880 1.00693 0.87286 0.94072 1.20456 0.77351 0.81589 0.90600 1.43503 1.58696 1.23724 1.13342 1.90812 1.50039 1.48311 1.57247 1.20565 1.03555 0.96671 0.97627 1.21291 0.95237 0.98568 0.90676 0.97942 0.96698 0.94856 0.94355 0.93192 0.93776 0.92148 0.91542 0.91695 0.92202 0.75097 0.84291 0.81118 0.85284 0.85233 0.74415 0.75365 0.83613 0.83019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.69 8.98 127.77 1.15 9.84 16 2 N -0.62 -30.83 2.92 -726.96 -2.12 -32.96 16 3 C -0.26 -14.20 9.65 84.04 0.81 -13.39 16 4 H 0.07 3.79 7.86 -2.91 -0.02 3.77 16 5 C -0.06 -3.12 5.10 84.86 0.43 -2.69 16 6 N -0.94 -56.22 10.71 21.65 0.23 -55.98 16 7 Si 0.97 45.15 29.57 68.60 2.03 47.18 16 8 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 9 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 10 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 11 C 0.15 5.85 5.64 86.38 0.49 6.34 16 12 C -0.13 -3.99 5.65 30.59 0.17 -3.81 16 13 C 0.13 3.62 5.67 86.38 0.49 4.11 16 14 N -0.71 -17.04 5.51 -466.19 -2.57 -19.61 16 15 C 0.56 14.70 7.76 86.71 0.67 15.38 16 16 O -0.58 -19.71 16.34 -3.97 -0.06 -19.78 16 17 C -0.19 -3.89 5.88 -20.08 -0.12 -4.01 16 18 C -0.03 -0.43 9.58 22.51 0.22 -0.22 16 19 C -0.21 -2.48 9.01 22.32 0.20 -2.27 16 20 C 0.15 2.29 6.70 22.63 0.15 2.44 16 21 O -0.31 -4.96 9.66 -71.30 -0.69 -5.65 16 22 C 0.03 0.17 5.21 71.23 0.37 0.54 16 23 C 0.52 5.62 8.18 87.65 0.72 6.33 16 24 N -0.83 -0.81 8.87 -173.53 -1.54 -2.35 16 25 O -0.58 -13.92 17.34 15.99 0.28 -13.65 16 26 C -0.17 -2.69 9.97 22.32 0.22 -2.47 16 27 C -0.04 -0.64 9.53 22.51 0.21 -0.43 16 28 H 0.00 0.12 7.34 -2.39 -0.02 0.11 16 29 H 0.01 0.77 7.34 -2.39 -0.02 0.75 16 30 H 0.03 1.37 8.03 -2.39 -0.02 1.35 16 31 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.05 1.83 8.07 -2.38 -0.02 1.81 16 33 H 0.04 1.76 8.04 -2.39 -0.02 1.74 16 34 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 35 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.06 1.82 8.14 -2.39 -0.02 1.81 16 37 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.41 7.66 6.49 -92.71 -0.60 7.06 16 39 H 0.14 2.40 7.64 -2.91 -0.02 2.38 16 40 H 0.17 0.59 6.28 -2.91 -0.02 0.58 16 41 H 0.13 -0.02 7.64 -2.39 -0.02 -0.04 16 42 H 0.13 -0.04 7.66 -2.39 -0.02 -0.05 16 43 H 0.42 -2.94 8.83 -92.70 -0.82 -3.76 16 44 H 0.41 0.22 8.93 -92.72 -0.83 -0.60 16 45 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 46 H 0.15 1.87 6.39 -2.91 -0.02 1.85 16 Total: -1.00 -84.48 390.26 0.53 -83.95 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -1.21 Total: 3.15 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 6.19 Total: 15.70 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -6.00 Total: -110.90 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.48 Total: -39.08 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -84.48 0.53 -83.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316835771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.902 kcal (2) G-P(sol) polarization free energy of solvation -84.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds