Wall clock time and date at job start Tue Mar 31 2020 18:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36930 * 120.00232 * 2 1 4 4 H 1.07996 * 120.00498 * 203.04750 * 3 2 1 5 5 C 1.38816 * 119.99523 * 23.05158 * 3 2 1 6 6 N 1.31609 * 120.00652 * 12.93004 * 5 3 2 7 7 Si 1.86801 * 119.99652 * 192.92464 * 5 3 2 8 8 H 1.48495 * 109.47376 * 90.00139 * 7 5 3 9 9 H 1.48500 * 109.47497 * 210.00492 * 7 5 3 10 10 H 1.48508 * 109.47330 * 329.99871 * 7 5 3 11 11 C 1.46504 * 119.99403 * 180.02562 * 2 1 3 12 12 C 1.52991 * 109.47127 * 89.99988 * 11 2 1 13 13 C 1.53004 * 109.47151 * 179.97438 * 12 11 2 14 14 N 1.46496 * 109.47441 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00326 * 179.97438 * 14 13 12 16 16 O 1.21625 * 119.99613 * 0.02562 * 15 14 13 17 17 C 1.47279 * 120.00054 * 180.02562 * 15 14 13 18 18 C 1.36592 * 127.54384 * 359.96047 * 17 15 14 19 19 O 1.34103 * 108.89536 * 179.97438 * 18 17 15 20 20 C 1.33388 * 111.29680 * 359.49938 * 19 18 17 21 21 C 1.36159 * 108.04832 * 0.91685 * 20 19 18 22 22 C 1.47713 * 122.21210 * 178.94910 * 21 20 19 23 23 O 1.21627 * 122.33158 * 223.69661 * 22 21 20 24 24 N 1.35749 * 115.34194 * 43.67492 * 22 21 20 25 25 C 1.45332 * 119.18043 * 14.06749 * 24 22 21 26 26 C 1.52907 * 113.82882 * 273.94517 * 25 24 22 27 27 C 1.50509 * 128.60130 * 181.00133 * 20 19 18 28 28 H 1.09007 * 109.46948 * 275.11777 * 1 2 3 29 29 H 1.09006 * 109.47339 * 35.11506 * 1 2 3 30 30 H 1.08992 * 109.47611 * 155.11975 * 1 2 3 31 31 H 0.97003 * 120.00428 * 179.97438 * 6 5 3 32 32 H 1.09004 * 109.46997 * 329.99194 * 11 2 1 33 33 H 1.08996 * 109.46393 * 209.99634 * 11 2 1 34 34 H 1.08991 * 109.47845 * 59.99323 * 12 11 2 35 35 H 1.09009 * 109.47263 * 299.99368 * 12 11 2 36 36 H 1.09001 * 109.46740 * 59.99936 * 13 12 11 37 37 H 1.08993 * 109.47110 * 300.00180 * 13 12 11 38 38 H 0.96998 * 120.00065 * 0.02562 * 14 13 12 39 39 H 1.07996 * 125.54836 * 359.97107 * 18 17 15 40 40 H 0.97003 * 120.41283 * 194.05198 * 24 22 21 41 41 H 1.09001 * 108.61882 * 152.82179 * 25 24 22 42 42 H 1.09001 * 108.49983 * 34.98678 * 25 24 22 43 43 H 1.09003 * 109.46466 * 284.34161 * 26 25 24 44 44 H 1.09000 * 109.46588 * 164.35065 * 26 25 24 45 45 H 1.08994 * 109.45788 * 349.16758 * 27 20 19 46 46 H 1.09004 * 109.45760 * 229.20368 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1651 1.2232 -0.3661 5 6 1.5387 2.3400 0.4707 6 7 0.4120 2.2597 1.1460 7 14 2.3160 4.0072 0.1458 8 1 1.7989 4.5534 -1.1345 9 1 1.9762 4.9362 1.2534 10 1 3.7910 3.8576 0.0604 11 6 2.1974 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 6 3.2178 -3.0347 -1.4438 14 7 3.4614 -3.4574 -2.8251 15 6 4.1247 -4.6044 -3.0719 16 8 4.5205 -5.2888 -2.1477 17 6 4.3700 -5.0290 -4.4607 18 6 3.9968 -4.3853 -5.6061 19 8 4.4117 -5.1012 -6.6615 20 6 5.0614 -6.2005 -6.2759 21 6 5.0651 -6.2328 -4.9147 22 6 5.6865 -7.3367 -4.1550 23 8 5.1489 -7.8456 -3.1900 24 7 6.8993 -7.7440 -4.6091 25 6 7.6180 -6.9089 -5.5568 26 6 7.2318 -7.1566 -7.0154 27 6 5.7037 -7.2600 -7.1305 28 1 -0.3633 0.0917 1.0236 29 1 -0.3634 0.8407 -0.5912 30 1 -0.3634 -0.9322 -0.4323 31 1 -0.0148 3.0662 1.4753 32 1 1.6083 -2.0286 0.5131 33 1 3.1498 -1.1387 0.5133 34 1 3.0414 -0.9501 -1.9568 35 1 1.4999 -1.8400 -1.9571 36 1 2.6290 -3.7947 -0.9301 37 1 4.1702 -2.9042 -0.9300 38 1 3.1460 -2.9113 -3.5622 39 1 3.4558 -3.4519 -5.6540 40 1 7.2815 -8.5819 -4.3046 41 1 8.6862 -7.0941 -5.4436 42 1 7.4197 -5.8642 -5.3171 43 1 7.6856 -8.0864 -7.3584 44 1 7.5873 -6.3301 -7.6307 45 1 5.4075 -7.1172 -8.1696 46 1 5.3800 -8.2445 -6.7927 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316836975.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:33:48 Heat of formation + Delta-G solvation = -33.989733 kcal Electronic energy + Delta-G solvation = -28351.249727 eV Core-core repulsion = 24243.322087 eV Total energy + Delta-G solvation = -4107.927639 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.26892 -39.72646 -39.35066 -36.90802 -36.23179 -34.72408 -33.30049 -33.21779 -31.97257 -30.54330 -29.66247 -26.76643 -25.99436 -25.56139 -24.42952 -23.46404 -22.09869 -21.61633 -20.55251 -20.05534 -19.59092 -17.75912 -17.58400 -16.91486 -16.74810 -16.69876 -15.86448 -15.73210 -15.45822 -15.34863 -14.96123 -14.73940 -14.36170 -14.03596 -13.95539 -13.58015 -13.48414 -13.26512 -13.10440 -12.88774 -12.65430 -12.33525 -11.92706 -11.69890 -11.55115 -11.41278 -11.01329 -10.80169 -10.78311 -10.46972 -10.33222 -10.19159 -10.10554 -9.97747 -9.83529 -9.78809 -9.44104 -9.06488 -8.91562 -8.53709 -6.72856 -5.70591 -3.17858 0.94312 1.11018 2.15865 2.56619 3.00442 3.13446 3.33789 3.38275 3.44412 3.46092 3.95721 4.08304 4.21342 4.28859 4.40039 4.50655 4.61829 4.75577 4.87683 5.04762 5.08048 5.11143 5.26210 5.29608 5.38071 5.44488 5.47971 5.50578 5.63164 5.85238 5.91251 6.12668 6.20127 6.42843 6.43661 6.57151 6.61799 6.76655 6.78016 6.79344 6.95478 7.38793 7.53076 7.75181 7.81958 7.98996 8.26090 8.41831 9.25605 9.89242 10.38545 11.34187 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021872 B = 0.002015 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1279.891055 B =13892.014547 C =14299.346553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.603 5.603 3 C -0.255 4.255 4 H 0.068 0.932 5 C 0.000 4.000 6 N -0.908 5.908 7 Si 0.905 3.095 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.280 1.280 11 C 0.155 3.845 12 C -0.150 4.150 13 C 0.122 3.878 14 N -0.722 5.722 15 C 0.574 3.426 16 O -0.513 6.513 17 C -0.176 4.176 18 C 0.013 3.987 19 O -0.157 6.157 20 C 0.033 3.967 21 C -0.192 4.192 22 C 0.593 3.407 23 O -0.491 6.491 24 N -0.733 5.733 25 C 0.106 3.894 26 C -0.135 4.135 27 C -0.042 4.042 28 H 0.031 0.969 29 H 0.039 0.961 30 H -0.002 1.002 31 H 0.252 0.748 32 H 0.038 0.962 33 H 0.049 0.951 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.396 0.604 39 H 0.220 0.780 40 H 0.404 0.596 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.085 0.915 45 H 0.092 0.908 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.978 -19.467 -22.239 32.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.326 5.326 3 C -0.384 4.384 4 H 0.086 0.914 5 C -0.198 4.198 6 N -0.553 5.553 7 Si 0.735 3.265 8 H -0.216 1.216 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.026 3.974 12 C -0.190 4.190 13 C -0.001 4.001 14 N -0.374 5.374 15 C 0.359 3.641 16 O -0.389 6.389 17 C -0.181 4.181 18 C -0.056 4.056 19 O -0.051 6.051 20 C -0.019 4.019 21 C -0.197 4.197 22 C 0.379 3.621 23 O -0.363 6.363 24 N -0.388 5.388 25 C -0.020 4.020 26 C -0.174 4.174 27 C -0.079 4.079 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.016 0.984 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.230 0.770 39 H 0.237 0.763 40 H 0.241 0.759 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.104 0.896 45 H 0.111 0.889 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.718 -19.833 -21.236 31.718 hybrid contribution 0.228 1.137 -0.366 1.216 sum 12.946 -18.696 -21.602 31.366 Atomic orbital electron populations 1.20791 0.82671 0.95298 0.99494 1.43900 1.01855 1.00680 1.86152 1.19187 0.98245 0.85617 1.35371 0.91428 1.25044 0.97956 0.98572 0.98245 1.70068 1.19492 1.27154 1.38573 0.86250 0.78739 0.84169 0.77346 1.21567 1.21758 1.20497 1.20599 0.96414 0.88522 0.91822 1.22529 0.99425 0.94113 1.02981 1.21484 1.00578 0.97032 0.81035 1.45962 1.58129 1.23321 1.10017 1.17172 0.78851 0.81236 0.86810 1.90889 1.50105 1.53085 1.44793 1.20979 1.05965 0.96715 0.94449 1.24651 1.00685 0.97512 0.82757 1.83558 1.56016 1.29442 1.36041 1.22645 0.97438 0.88847 0.92977 1.20945 1.07357 0.98411 0.93025 1.17632 0.80489 0.81762 0.82253 1.90903 1.64028 1.57343 1.24011 1.45685 1.20123 1.25899 1.47092 1.21171 0.96653 0.95984 0.88203 1.22263 0.93626 1.03996 0.97491 1.20303 0.94710 0.93706 0.99183 0.95080 0.94186 0.98387 0.93764 0.94331 0.93233 0.91547 0.92190 0.91541 0.91455 0.77020 0.76328 0.75905 0.89661 0.90775 0.89737 0.89600 0.88895 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.02 8.98 59.85 0.54 4.56 16 2 N -0.60 -15.20 2.92 -181.12 -0.53 -15.73 16 3 C -0.25 -6.99 9.65 -15.06 -0.15 -7.13 16 4 H 0.07 1.81 7.86 -52.49 -0.41 1.39 16 5 C 0.00 0.00 5.10 -17.43 -0.09 -0.09 16 6 N -0.91 -26.73 10.71 55.49 0.59 -26.14 16 7 Si 0.90 21.85 29.57 -169.99 -5.03 16.82 16 8 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 9 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 C 0.15 3.15 5.64 -4.04 -0.02 3.12 16 12 C -0.15 -2.45 5.65 -26.73 -0.15 -2.61 16 13 C 0.12 1.83 5.67 -4.04 -0.02 1.80 16 14 N -0.72 -9.38 5.55 -61.43 -0.34 -9.72 16 15 C 0.57 8.75 7.81 -12.58 -0.10 8.65 16 16 O -0.51 -10.20 15.77 -3.75 -0.06 -10.26 16 17 C -0.18 -2.15 6.32 -103.61 -0.65 -2.80 16 18 C 0.01 0.11 11.61 30.14 0.35 0.46 16 19 O -0.16 -1.28 10.48 8.61 0.09 -1.19 16 20 C 0.03 0.28 6.35 -35.15 -0.22 0.05 16 21 C -0.19 -2.28 4.99 -103.56 -0.52 -2.79 16 22 C 0.59 7.79 7.29 -11.95 -0.09 7.70 16 23 O -0.49 -8.87 17.12 -3.75 -0.06 -8.93 16 24 N -0.73 -5.91 5.26 -61.87 -0.33 -6.24 16 25 C 0.11 0.53 6.00 -4.72 -0.03 0.51 16 26 C -0.13 -0.39 6.32 -26.47 -0.17 -0.56 16 27 C -0.04 -0.19 5.65 -27.67 -0.16 -0.35 16 28 H 0.03 0.84 7.34 -51.92 -0.38 0.45 16 29 H 0.04 1.05 7.34 -51.93 -0.38 0.67 16 30 H 0.00 -0.05 8.03 -51.93 -0.42 -0.47 16 31 H 0.25 7.18 8.31 -40.82 -0.34 6.85 16 32 H 0.04 0.75 8.07 -51.93 -0.42 0.33 16 33 H 0.05 1.02 8.04 -51.93 -0.42 0.60 16 34 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 36 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 37 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.40 3.85 7.47 -40.82 -0.31 3.55 16 39 H 0.22 0.92 7.49 -52.49 -0.39 0.52 16 40 H 0.40 2.56 8.95 -40.82 -0.37 2.19 16 41 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 42 H 0.07 0.51 6.93 -51.93 -0.36 0.15 16 43 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 44 H 0.09 0.17 8.14 -51.93 -0.42 -0.26 16 45 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.10 0.46 8.04 -51.93 -0.42 0.05 16 LS Contribution 380.78 15.07 5.74 5.74 Total: -1.00 -38.46 380.78 -8.19 -46.65 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -6.79 Total: -1.53 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -1.48 Total: 10.53 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.60 Total: -57.83 kcal Atomic # 8 Polarization: -20.35 SS G_CDS: -0.03 Total: -20.38 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -38.46 -8.19 -46.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316836975.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.659 kcal (2) G-P(sol) polarization free energy of solvation -38.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds