Wall clock time and date at job start Tue Mar 31 2020 18:58:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35685 * 116.99559 * 2 1 4 4 C 1.38918 * 119.68097 * 179.97438 * 3 2 1 5 5 C 1.38373 * 119.10983 * 179.74199 * 4 3 2 6 6 C 1.38832 * 118.48555 * 0.53999 * 5 4 3 7 7 C 1.50705 * 120.35776 * 179.73002 * 6 5 4 8 8 O 1.42893 * 109.47236 * 269.72533 * 7 6 5 9 9 C 1.42897 * 113.99953 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.47282 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99950 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00383 * 179.97438 * 10 9 8 13 13 C 1.47425 * 125.64544 * 0.04172 * 12 10 9 14 14 C 1.54907 * 104.83286 * 204.08750 * 13 12 10 15 15 C 1.55159 * 101.58189 * 322.99498 * 14 13 12 16 16 H 1.09000 * 110.86746 * 277.06153 * 15 14 13 17 17 N 1.46506 * 110.71814 * 153.86373 * 15 14 13 18 18 C 1.36929 * 119.99807 * 160.02092 * 17 15 14 19 19 H 1.08004 * 120.00341 * 0.27647 * 18 17 15 20 20 C 1.38815 * 120.00031 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99958 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47093 * 60.00562 * 22 20 18 24 24 H 1.48495 * 109.47002 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47239 * 300.00281 * 22 20 18 26 26 C 1.47024 * 125.65063 * 179.97438 * 12 10 9 27 27 C 1.38047 * 119.28864 * 359.46045 * 6 5 4 28 28 N 1.31962 * 120.83208 * 0.27321 * 27 6 5 29 29 H 1.09004 * 109.47069 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47302 * 299.99961 * 1 2 3 31 31 H 1.08998 * 109.46841 * 60.00290 * 1 2 3 32 32 H 1.07999 * 120.44640 * 0.04407 * 4 3 2 33 33 H 1.08000 * 120.76014 * 180.29191 * 5 4 3 34 34 H 1.08997 * 109.46880 * 149.72345 * 7 6 5 35 35 H 1.09005 * 109.46489 * 29.72365 * 7 6 5 36 36 H 1.08997 * 109.47329 * 60.00062 * 9 8 7 37 37 H 1.08999 * 109.47366 * 299.99586 * 9 8 7 38 38 H 1.08997 * 110.36863 * 322.93403 * 13 12 10 39 39 H 1.09009 * 110.36670 * 85.14492 * 13 12 10 40 40 H 1.08995 * 111.00579 * 204.91589 * 14 13 12 41 41 H 1.09005 * 111.00065 * 81.06309 * 14 13 12 42 42 H 0.96999 * 120.00076 * 340.02156 * 17 15 14 43 43 H 0.97000 * 120.00284 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.88184 * 59.55834 * 26 12 10 45 45 H 1.09002 * 110.00744 * 298.46825 * 26 12 10 46 46 H 1.07993 * 119.58300 * 180.29686 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4326 1.2741 0.0005 5 6 4.0484 2.5132 -0.0049 6 6 3.2503 3.6493 0.0008 7 6 3.8766 5.0200 0.0013 8 8 4.0740 5.4530 1.3487 9 6 4.6665 6.7484 1.4620 10 6 4.8279 7.1014 2.9182 11 8 4.4704 6.3207 3.7746 12 7 5.3696 8.2846 3.2687 13 6 5.8440 9.3226 2.3355 14 6 6.8880 10.1341 3.1423 15 6 6.2497 10.1441 4.5564 16 1 5.5040 10.9347 4.6403 17 7 7.2787 10.2931 5.5886 18 6 6.9351 10.7304 6.8398 19 1 5.9047 10.9612 7.0672 20 6 7.9099 10.8711 7.8179 21 7 9.1647 10.5847 7.5425 22 14 7.4410 11.4670 9.5252 23 1 6.4627 10.5255 10.1266 24 1 8.6551 11.5315 10.3777 25 1 6.8324 12.8181 9.4281 26 6 5.5841 8.7546 4.6452 27 6 1.8769 3.5098 0.0003 28 7 1.3185 2.3141 -0.0001 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.0229 0.3697 0.0002 33 1 5.1253 2.5949 -0.0094 34 1 3.2183 5.7204 -0.5127 35 1 4.8373 4.9806 -0.5122 36 1 4.0249 7.4850 0.9782 37 1 5.6436 6.7446 0.9790 38 1 6.3110 8.8642 1.4637 39 1 5.0173 9.9636 2.0290 40 1 6.9841 11.1464 2.7498 41 1 7.8532 9.6276 3.1529 42 1 8.2034 10.0821 5.3855 43 1 9.8460 10.6834 8.2258 44 1 6.2391 8.0631 5.1752 45 1 4.6295 8.8332 5.1655 46 1 1.2516 4.3903 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317061320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:29 Heat of formation + Delta-G solvation = -54.574530 kcal Electronic energy + Delta-G solvation = -27401.152761 eV Core-core repulsion = 23292.332498 eV Total energy + Delta-G solvation = -4108.820263 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.99930 -39.85907 -38.63763 -37.80274 -36.88039 -34.15829 -33.10657 -31.98606 -31.60471 -29.67562 -28.97122 -27.92263 -26.88363 -25.71868 -23.88324 -23.81570 -22.59128 -22.29454 -20.23116 -19.20030 -18.76882 -17.57878 -17.46038 -17.24496 -16.64865 -16.43318 -16.29451 -15.79549 -15.67206 -14.98459 -14.80466 -14.66320 -14.41430 -13.98800 -13.71882 -13.52572 -13.46224 -13.26030 -12.97618 -12.87999 -12.56837 -12.27805 -12.17412 -11.87334 -11.80659 -11.62967 -11.46941 -11.16535 -10.85281 -10.75794 -10.37496 -10.26046 -10.11337 -10.08633 -9.89910 -9.78734 -9.60879 -9.00966 -8.82578 -8.36736 -7.10533 -5.84914 -3.15915 0.72916 0.88851 2.70495 2.76905 2.78128 3.37639 3.41771 3.46526 3.47197 3.87344 3.96757 4.40527 4.46997 4.53298 4.58648 4.64398 4.78947 4.84304 4.90391 4.94024 4.96607 4.97255 5.02505 5.08090 5.20852 5.27100 5.27581 5.38048 5.46584 5.53906 5.64925 5.68884 5.89195 5.89395 6.03855 6.06277 6.26307 6.33407 6.45939 6.60410 6.81818 6.85215 6.86423 7.46945 7.63804 7.73157 8.32101 8.36736 9.44531 9.97406 10.32058 11.36990 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.001711 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.666400 B =16361.581889 C =16996.104951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.309 6.309 3 C 0.323 3.677 4 C -0.192 4.192 5 C -0.017 4.017 6 C -0.179 4.179 7 C 0.111 3.889 8 O -0.358 6.358 9 C 0.049 3.951 10 C 0.522 3.478 11 O -0.524 6.524 12 N -0.613 5.613 13 C 0.100 3.900 14 C -0.140 4.140 15 C 0.172 3.828 16 H 0.066 0.934 17 N -0.713 5.713 18 C -0.251 4.251 19 H 0.072 0.928 20 C -0.008 4.008 21 N -0.930 5.930 22 Si 0.909 3.091 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.084 3.916 27 C 0.164 3.836 28 N -0.542 5.542 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.387 0.613 43 H 0.257 0.743 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.292 -13.347 -23.681 29.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.215 6.215 3 C 0.145 3.855 4 C -0.213 4.213 5 C -0.043 4.043 6 C -0.181 4.181 7 C 0.034 3.966 8 O -0.276 6.276 9 C -0.030 4.030 10 C 0.309 3.691 11 O -0.399 6.399 12 N -0.350 5.350 13 C -0.024 4.024 14 C -0.179 4.179 15 C 0.059 3.941 16 H 0.084 0.916 17 N -0.353 5.353 18 C -0.381 4.381 19 H 0.090 0.910 20 C -0.204 4.204 21 N -0.577 5.577 22 Si 0.740 3.260 23 H -0.211 1.211 24 H -0.216 1.216 25 H -0.211 1.211 26 C -0.041 4.041 27 C 0.009 3.991 28 N -0.266 5.266 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.221 0.779 43 H 0.067 0.933 44 H 0.091 0.909 45 H 0.077 0.923 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -13.435 -14.255 -22.883 30.122 hybrid contribution 0.811 0.545 0.712 1.209 sum -12.624 -13.709 -22.171 28.963 Atomic orbital electron populations 1.22879 0.77060 1.03010 1.02604 1.86244 1.23095 1.24558 1.87646 1.19916 0.89500 0.84742 0.91369 1.21067 0.92005 0.99599 1.08604 1.21358 1.00726 0.90631 0.91547 1.20377 0.94838 0.95266 1.07632 1.21165 0.99385 0.91708 0.84353 1.88114 1.82178 1.32175 1.25132 1.22208 0.99079 0.86506 0.95248 1.19803 0.78346 0.80802 0.90186 1.90742 1.48788 1.48490 1.51878 1.48520 1.60912 1.16079 1.09469 1.22353 0.97297 0.89927 0.92801 1.23049 0.98284 1.00092 0.96448 1.21216 0.92030 0.92863 0.87946 0.91586 1.42359 1.05603 1.78745 1.08543 1.19215 0.93750 1.37393 0.87785 0.90954 1.24772 0.95368 1.01815 0.98485 1.69646 0.99929 1.54234 1.33917 0.86243 0.77077 0.78637 0.84073 1.21085 1.21626 1.21121 1.23263 1.00877 0.99118 0.80847 1.22318 0.92090 0.93698 0.91035 1.67359 1.40776 0.98734 1.19685 0.88571 0.92131 0.92251 0.83838 0.83802 0.91875 0.91935 0.90309 0.90321 0.91199 0.91300 0.89908 0.90421 0.77853 0.93282 0.90873 0.92344 0.82178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.38 101.05 1.05 1.33 16 2 O -0.31 -3.09 10.48 -18.76 -0.20 -3.29 16 3 C 0.32 3.47 7.49 -17.12 -0.13 3.34 16 4 C -0.19 -1.77 10.04 -39.28 -0.39 -2.16 16 5 C -0.02 -0.15 9.85 -39.31 -0.39 -0.54 16 6 C -0.18 -1.65 5.53 -104.47 -0.58 -2.23 16 7 C 0.11 0.90 6.09 36.01 0.22 1.11 16 8 O -0.36 -4.48 9.86 -55.14 -0.54 -5.03 16 9 C 0.05 0.54 5.42 36.01 0.20 0.73 16 10 C 0.52 8.44 7.93 -10.99 -0.09 8.35 16 11 O -0.52 -11.15 16.83 -14.35 -0.24 -11.39 16 12 N -0.61 -9.44 3.33 -170.52 -0.57 -10.01 16 13 C 0.10 1.12 6.69 -2.53 -0.02 1.10 16 14 C -0.14 -1.94 6.69 -24.58 -0.16 -2.11 16 15 C 0.17 3.17 3.59 -66.09 -0.24 2.94 16 16 H 0.07 1.21 8.12 -51.93 -0.42 0.78 16 17 N -0.71 -17.04 5.18 -51.65 -0.27 -17.31 16 18 C -0.25 -6.75 9.98 -15.06 -0.15 -6.90 16 19 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 21 N -0.93 -27.46 13.06 55.49 0.72 -26.73 16 22 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 26 C 0.08 1.58 6.62 -3.07 -0.02 1.56 16 27 C 0.16 1.59 10.85 -17.57 -0.19 1.40 16 28 N -0.54 -5.96 9.22 -13.33 -0.12 -6.08 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.06 0.41 8.10 -51.93 -0.42 -0.02 16 32 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 35 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 36 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.65 7.85 -51.93 -0.41 0.25 16 38 H 0.07 0.59 7.48 -51.93 -0.39 0.20 16 39 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.08 1.14 8.00 -51.93 -0.42 0.72 16 42 H 0.39 9.82 7.71 -40.82 -0.31 9.50 16 43 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.07 1.61 8.03 -51.93 -0.42 1.19 16 45 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 392.07 15.07 5.91 5.91 Total: -1.00 -35.77 392.07 -8.29 -44.06 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.97 Total: 5.17 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -0.99 Total: 7.62 kcal Atomic # 7 Polarization: -59.90 SS G_CDS: -0.23 Total: -60.13 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.98 Total: -19.70 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.77 -8.29 -44.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317061320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.516 kcal (2) G-P(sol) polarization free energy of solvation -35.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds