Wall clock time and date at job start Tue Mar 31 2020 18:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35685 * 116.99559 * 2 1 4 4 C 1.38918 * 119.68097 * 179.97438 * 3 2 1 5 5 C 1.38373 * 119.10983 * 179.74199 * 4 3 2 6 6 C 1.38832 * 118.48555 * 0.53999 * 5 4 3 7 7 C 1.50705 * 120.35776 * 179.73002 * 6 5 4 8 8 O 1.42893 * 109.47236 * 269.72533 * 7 6 5 9 9 C 1.42897 * 113.99953 * 179.97438 * 8 7 6 10 10 C 1.50705 * 109.47282 * 180.02562 * 9 8 7 11 11 O 1.21284 * 119.99950 * 359.97438 * 10 9 8 12 12 N 1.34772 * 120.00383 * 179.97438 * 10 9 8 13 13 C 1.47425 * 125.64544 * 0.04172 * 12 10 9 14 14 C 1.54907 * 104.83286 * 204.08750 * 13 12 10 15 15 C 1.55159 * 101.58189 * 322.99498 * 14 13 12 16 16 H 1.09000 * 110.86746 * 277.06153 * 15 14 13 17 17 N 1.46506 * 110.71814 * 153.86373 * 15 14 13 18 18 C 1.36929 * 119.99807 * 160.02092 * 17 15 14 19 19 H 1.08004 * 120.00341 * 0.27647 * 18 17 15 20 20 C 1.38815 * 120.00031 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99916 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99958 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47093 * 60.00562 * 22 20 18 24 24 H 1.48495 * 109.47002 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47239 * 300.00281 * 22 20 18 26 26 C 1.47024 * 125.65063 * 179.97438 * 12 10 9 27 27 C 1.38047 * 119.28864 * 359.46045 * 6 5 4 28 28 N 1.31962 * 120.83208 * 0.27321 * 27 6 5 29 29 H 1.09004 * 109.47069 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47302 * 299.99961 * 1 2 3 31 31 H 1.08998 * 109.46841 * 60.00290 * 1 2 3 32 32 H 1.07999 * 120.44640 * 0.04407 * 4 3 2 33 33 H 1.08000 * 120.76014 * 180.29191 * 5 4 3 34 34 H 1.08997 * 109.46880 * 149.72345 * 7 6 5 35 35 H 1.09005 * 109.46489 * 29.72365 * 7 6 5 36 36 H 1.08997 * 109.47329 * 60.00062 * 9 8 7 37 37 H 1.08999 * 109.47366 * 299.99586 * 9 8 7 38 38 H 1.08997 * 110.36863 * 322.93403 * 13 12 10 39 39 H 1.09009 * 110.36670 * 85.14492 * 13 12 10 40 40 H 1.08995 * 111.00579 * 204.91589 * 14 13 12 41 41 H 1.09005 * 111.00065 * 81.06309 * 14 13 12 42 42 H 0.96999 * 120.00076 * 340.02156 * 17 15 14 43 43 H 0.97000 * 120.00284 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.88184 * 59.55834 * 26 12 10 45 45 H 1.09002 * 110.00744 * 298.46825 * 26 12 10 46 46 H 1.07993 * 119.58300 * 180.29686 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4326 1.2741 0.0005 5 6 4.0484 2.5132 -0.0049 6 6 3.2503 3.6493 0.0008 7 6 3.8766 5.0200 0.0013 8 8 4.0740 5.4530 1.3487 9 6 4.6665 6.7484 1.4620 10 6 4.8279 7.1014 2.9182 11 8 4.4704 6.3207 3.7746 12 7 5.3696 8.2846 3.2687 13 6 5.8440 9.3226 2.3355 14 6 6.8880 10.1341 3.1423 15 6 6.2497 10.1441 4.5564 16 1 5.5040 10.9347 4.6403 17 7 7.2787 10.2931 5.5886 18 6 6.9351 10.7304 6.8398 19 1 5.9047 10.9612 7.0672 20 6 7.9099 10.8711 7.8179 21 7 9.1647 10.5847 7.5425 22 14 7.4410 11.4670 9.5252 23 1 6.4627 10.5255 10.1266 24 1 8.6551 11.5315 10.3777 25 1 6.8324 12.8181 9.4281 26 6 5.5841 8.7546 4.6452 27 6 1.8769 3.5098 0.0003 28 7 1.3185 2.3141 -0.0001 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 4.0229 0.3697 0.0002 33 1 5.1253 2.5949 -0.0094 34 1 3.2183 5.7204 -0.5127 35 1 4.8373 4.9806 -0.5122 36 1 4.0249 7.4850 0.9782 37 1 5.6436 6.7446 0.9790 38 1 6.3110 8.8642 1.4637 39 1 5.0173 9.9636 2.0290 40 1 6.9841 11.1464 2.7498 41 1 7.8532 9.6276 3.1529 42 1 8.2034 10.0821 5.3855 43 1 9.8460 10.6834 8.2258 44 1 6.2391 8.0631 5.1752 45 1 4.6295 8.8332 5.1655 46 1 1.2516 4.3903 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317061320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:58:28 Heat of formation + Delta-G solvation = -81.467690 kcal Electronic energy + Delta-G solvation = -27402.318936 eV Core-core repulsion = 23292.332498 eV Total energy + Delta-G solvation = -4109.986438 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.67733 -41.06229 -39.40562 -38.80936 -37.99491 -35.93097 -33.80981 -33.39823 -32.59938 -31.15389 -30.06583 -28.69195 -28.00426 -26.51675 -25.62124 -24.48202 -23.86930 -22.96053 -21.66764 -20.41064 -19.44174 -19.24504 -18.39368 -18.24327 -17.68915 -17.39749 -17.01350 -16.84593 -16.67578 -16.28760 -15.84949 -15.50113 -15.43507 -15.26957 -15.05509 -14.82055 -14.40169 -14.25300 -14.17852 -13.84773 -13.57416 -13.39529 -13.11594 -12.98358 -12.86457 -12.82066 -12.54853 -12.44184 -12.40074 -12.14746 -12.12659 -11.76053 -11.55588 -11.04831 -10.96271 -10.83120 -10.79639 -10.56887 -9.65925 -9.52042 -9.09778 -7.97941 -5.27693 0.03109 0.21950 1.46744 1.49586 1.55148 1.58354 1.73561 2.09995 2.53797 2.60762 3.13003 3.30224 3.33667 3.55726 3.71342 3.88978 3.91823 3.93441 3.98283 4.09644 4.17853 4.24522 4.32650 4.37314 4.39189 4.41647 4.42754 4.52633 4.54486 4.56610 4.72179 4.75018 4.77469 4.90105 4.91555 5.05525 5.22697 5.24945 5.25556 5.40822 5.41966 5.51406 6.09755 6.17242 6.24076 6.57908 6.76785 7.15835 7.31055 8.04034 8.26584 9.24623 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022347 B = 0.001711 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.666400 B =16361.581889 C =16996.104951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.322 6.322 3 C 0.301 3.699 4 C -0.200 4.200 5 C -0.021 4.021 6 C -0.187 4.187 7 C 0.110 3.890 8 O -0.398 6.398 9 C 0.060 3.940 10 C 0.511 3.489 11 O -0.591 6.591 12 N -0.612 5.612 13 C 0.103 3.897 14 C -0.130 4.130 15 C 0.164 3.836 16 H 0.072 0.928 17 N -0.726 5.726 18 C -0.249 4.249 19 H 0.076 0.924 20 C -0.070 4.070 21 N -0.966 5.966 22 Si 0.970 3.030 23 H -0.284 1.284 24 H -0.295 1.295 25 H -0.273 1.273 26 C 0.094 3.906 27 C 0.150 3.850 28 N -0.562 5.562 29 H 0.123 0.877 30 H 0.051 0.949 31 H 0.059 0.941 32 H 0.159 0.841 33 H 0.167 0.833 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.102 0.898 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.376 0.624 43 H 0.252 0.748 44 H 0.029 0.971 45 H 0.040 0.960 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.775 -12.329 -26.589 31.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.229 6.229 3 C 0.123 3.877 4 C -0.221 4.221 5 C -0.046 4.046 6 C -0.189 4.189 7 C 0.034 3.966 8 O -0.317 6.317 9 C -0.019 4.019 10 C 0.301 3.699 11 O -0.471 6.471 12 N -0.347 5.347 13 C -0.018 4.018 14 C -0.169 4.169 15 C 0.053 3.947 16 H 0.090 0.910 17 N -0.365 5.365 18 C -0.381 4.381 19 H 0.094 0.906 20 C -0.263 4.263 21 N -0.615 5.615 22 Si 0.799 3.201 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.199 1.199 26 C -0.032 4.032 27 C -0.006 4.006 28 N -0.286 5.286 29 H 0.141 0.859 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.176 0.824 33 H 0.184 0.816 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.120 0.880 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.209 0.791 43 H 0.061 0.939 44 H 0.048 0.952 45 H 0.059 0.941 46 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -13.955 -13.208 -25.866 32.222 hybrid contribution 0.888 0.186 1.559 1.804 sum -13.068 -13.022 -24.307 30.515 Atomic orbital electron populations 1.23042 0.75922 1.04640 1.02147 1.86222 1.24350 1.24563 1.87751 1.20245 0.90309 0.84933 0.92236 1.21350 0.91704 1.00688 1.08324 1.21717 1.01932 0.90293 0.90687 1.20663 0.94754 0.96421 1.07061 1.21398 1.01278 0.91182 0.82735 1.88062 1.82716 1.33054 1.27916 1.22268 1.01852 0.86999 0.90739 1.20999 0.76735 0.79779 0.92417 1.90710 1.51626 1.50493 1.54279 1.48590 1.60587 1.17043 1.08523 1.22681 0.97672 0.88995 0.92460 1.23010 0.98313 1.02150 0.93387 1.21459 0.91459 0.92263 0.89493 0.90990 1.42521 1.06274 1.78731 1.08943 1.19605 0.93783 1.35592 0.89117 0.90575 1.25538 0.95499 1.03211 1.02038 1.69790 1.00751 1.56356 1.34649 0.85268 0.76416 0.78507 0.79905 1.21062 1.22124 1.19852 1.22777 0.98920 0.98430 0.83117 1.22712 0.92969 0.93831 0.91052 1.67342 1.41511 0.99320 1.20387 0.85927 0.93033 0.92217 0.82376 0.81566 0.89183 0.89334 0.86289 0.86742 0.86761 0.88026 0.87423 0.91440 0.79099 0.93936 0.95219 0.94131 0.80552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.53 10.38 113.37 1.18 1.71 16 2 O -0.32 -6.50 10.48 -90.04 -0.94 -7.44 16 3 C 0.30 6.48 7.49 84.79 0.63 7.12 16 4 C -0.20 -3.56 10.04 22.46 0.23 -3.34 16 5 C -0.02 -0.33 9.85 22.44 0.22 -0.11 16 6 C -0.19 -3.10 5.53 -19.77 -0.11 -3.21 16 7 C 0.11 1.36 6.09 71.24 0.43 1.79 16 8 O -0.40 -8.82 9.86 -129.94 -1.28 -10.10 16 9 C 0.06 1.04 5.42 71.24 0.39 1.43 16 10 C 0.51 15.71 7.93 87.66 0.69 16.41 16 11 O -0.59 -25.73 16.83 15.99 0.27 -25.46 16 12 N -0.61 -17.68 3.33 -811.79 -2.70 -20.38 16 13 C 0.10 1.82 6.69 86.85 0.58 2.41 16 14 C -0.13 -3.23 6.69 31.99 0.21 -3.02 16 15 C 0.16 5.95 3.59 46.18 0.17 6.11 16 16 H 0.07 2.54 8.12 -2.39 -0.02 2.52 16 17 N -0.73 -35.24 5.18 -317.32 -1.64 -36.88 16 18 C -0.25 -13.62 9.98 84.04 0.84 -12.78 16 19 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 20 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 21 N -0.97 -58.37 13.06 21.65 0.28 -58.09 16 22 Si 0.97 46.06 29.55 68.60 2.03 48.09 16 23 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 25 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 26 C 0.09 3.61 6.62 86.73 0.57 4.18 16 27 C 0.15 2.76 10.85 84.63 0.92 3.68 16 28 N -0.56 -12.34 9.22 -308.95 -2.85 -15.19 16 29 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.05 0.81 8.10 -2.39 -0.02 0.79 16 31 H 0.06 0.82 8.10 -2.39 -0.02 0.80 16 32 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 33 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 34 H 0.09 0.62 8.09 -2.39 -0.02 0.60 16 35 H 0.09 0.63 8.09 -2.38 -0.02 0.61 16 36 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.12 1.19 7.85 -2.39 -0.02 1.17 16 38 H 0.11 1.13 7.48 -2.39 -0.02 1.12 16 39 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 40 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.07 1.84 8.00 -2.38 -0.02 1.82 16 42 H 0.38 19.57 7.71 -92.71 -0.72 18.86 16 43 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 44 H 0.03 1.37 8.03 -2.39 -0.02 1.35 16 45 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 46 H 0.18 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -84.00 392.07 0.86 -83.14 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: 0.27 Total: 23.46 kcal Atomic # 6 Polarization: 11.44 SS G_CDS: 7.42 Total: 18.86 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -6.91 Total: -130.54 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -1.96 Total: -43.01 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -84.00 0.86 -83.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317061320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.667 kcal (2) G-P(sol) polarization free energy of solvation -83.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.135 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds