Wall clock time and date at job start Tue Mar 31 2020 19:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35671 * 116.99504 * 2 1 4 4 C 1.38928 * 119.67995 * 179.97438 * 3 2 1 5 5 C 1.38380 * 119.11015 * 180.02562 * 4 3 2 6 6 C 1.38829 * 118.48696 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.35826 * 180.02562 * 6 5 4 8 8 O 1.42900 * 109.47397 * 270.00229 * 7 6 5 9 9 C 1.42900 * 114.00318 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47013 * 179.97438 * 9 8 7 11 11 O 1.21273 * 120.00424 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99722 * 179.97438 * 10 9 8 13 13 C 1.46494 * 120.00241 * 179.97438 * 12 10 9 14 14 H 1.09008 * 112.85049 * 334.67473 * 13 12 10 15 15 C 1.53781 * 113.61181 * 105.86670 * 13 12 10 16 16 C 1.54050 * 86.98702 * 89.16508 * 15 13 12 17 17 H 1.09001 * 113.61867 * 139.97479 * 16 15 13 18 18 N 1.46496 * 113.68806 * 270.87548 * 16 15 13 19 19 C 1.36941 * 119.99645 * 252.52536 * 18 16 15 20 20 H 1.07997 * 120.00535 * 0.02562 * 19 18 16 21 21 C 1.38811 * 119.99696 * 180.02562 * 19 18 16 22 22 N 1.31621 * 120.00304 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99880 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47202 * 60.00243 * 23 21 19 25 25 H 1.48509 * 109.46987 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47066 * 300.00090 * 23 21 19 27 27 C 1.53781 * 87.07613 * 25.43279 * 16 15 13 28 28 C 1.38052 * 119.28669 * 0.02562 * 6 5 4 29 29 N 1.31964 * 120.83627 * 359.97438 * 28 6 5 30 30 H 1.08998 * 109.47028 * 59.99983 * 1 2 3 31 31 H 1.08999 * 109.47031 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47517 * 299.99949 * 1 2 3 33 33 H 1.07995 * 120.44473 * 359.97438 * 4 3 2 34 34 H 1.08000 * 120.75741 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.46756 * 29.99821 * 7 6 5 36 36 H 1.08997 * 109.47325 * 150.00167 * 7 6 5 37 37 H 1.09003 * 109.46399 * 300.00164 * 9 8 7 38 38 H 1.09001 * 109.46694 * 59.99584 * 9 8 7 39 39 H 0.97005 * 119.99773 * 0.02562 * 12 10 9 40 40 H 1.09006 * 113.61244 * 203.66744 * 15 13 12 41 41 H 1.08999 * 113.61700 * 334.57129 * 15 13 12 42 42 H 0.96994 * 120.00152 * 72.53163 * 18 16 15 43 43 H 0.96999 * 120.00646 * 179.97438 * 22 21 19 44 44 H 1.08998 * 113.61333 * 220.02465 * 27 16 15 45 45 H 1.08996 * 113.69756 * 89.13170 * 27 16 15 46 46 H 1.08007 * 119.57949 * 180.25711 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0485 2.5132 0.0011 6 6 3.2504 3.6492 0.0005 7 6 3.8766 5.0199 0.0005 8 8 4.0741 5.4535 1.3477 9 6 4.6666 6.7490 1.4605 10 6 4.8268 7.1029 2.9165 11 8 4.4694 6.3226 3.7733 12 7 5.3684 8.2864 3.2666 13 6 5.5237 8.6309 4.6820 14 1 4.8123 8.1120 5.3245 15 6 6.9765 8.5496 5.1798 16 6 7.1202 10.0221 4.7509 17 1 7.6985 10.6262 5.4500 18 7 7.5515 10.1909 3.3611 19 6 8.8240 10.6155 3.0859 20 1 9.5098 10.8255 3.8934 21 6 9.2326 10.7759 1.7690 22 7 8.3968 10.5204 0.7848 23 14 10.9687 11.3543 1.3936 24 1 11.9452 10.3877 1.9569 25 1 11.1535 11.4435 -0.0773 26 1 11.1876 12.6909 2.0025 27 6 5.5993 10.1445 4.9431 28 6 1.8770 3.5096 0.0000 29 7 1.3185 2.3140 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 4.0229 0.3696 0.0014 34 1 5.1254 2.5948 0.0011 35 1 4.8374 4.9803 -0.5130 36 1 3.2184 5.7201 -0.5137 37 1 5.6437 6.7448 0.9774 38 1 4.0250 7.4852 0.9764 39 1 5.6546 8.9105 2.5813 40 1 7.0614 8.3980 6.2560 41 1 7.5975 7.8631 4.6044 42 1 6.9358 10.0020 2.6358 43 1 8.6821 10.6328 -0.1354 44 1 5.1093 10.7448 4.1765 45 1 5.3070 10.4284 5.9540 46 1 1.2516 4.3902 -0.0047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317114708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:27 Heat of formation + Delta-G solvation = -37.196432 kcal Electronic energy + Delta-G solvation = -27773.602278 eV Core-core repulsion = 23665.535586 eV Total energy + Delta-G solvation = -4108.066692 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.90017 -39.89312 -38.63438 -38.05178 -37.00385 -33.67934 -32.99880 -32.65208 -31.80725 -30.02217 -28.38223 -27.53992 -25.70428 -25.14418 -24.40012 -23.72584 -22.59953 -22.17110 -20.28461 -18.98215 -18.68187 -17.56880 -17.45733 -16.99194 -16.65018 -16.23850 -16.05438 -15.65883 -15.31953 -14.82658 -14.72805 -14.66261 -14.37026 -14.08810 -13.87891 -13.60279 -13.43546 -13.19267 -13.03081 -12.61062 -12.30624 -12.17265 -12.07139 -11.84801 -11.66118 -11.50562 -11.37410 -10.93127 -10.86143 -10.30152 -10.19457 -10.15376 -9.96121 -9.91701 -9.73447 -9.62912 -9.46889 -8.98445 -8.72608 -8.57323 -7.12824 -5.93270 -3.21552 0.83572 0.99251 2.79742 2.88801 2.98616 3.36434 3.41221 3.41846 3.52755 4.02677 4.14092 4.47278 4.60842 4.64264 4.73096 4.86078 4.95715 5.01604 5.02941 5.07047 5.15556 5.21104 5.21591 5.27421 5.33443 5.35555 5.40440 5.49306 5.50648 5.65183 5.81837 5.90804 6.02309 6.11934 6.14151 6.23091 6.29398 6.54057 6.68702 6.80191 6.91145 6.94373 7.12206 7.56242 7.60039 7.87252 8.26785 8.54998 9.37223 9.91492 10.24977 11.29689 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.002060 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.573551 B =13592.015582 C =14749.250643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.309 6.309 3 C 0.321 3.679 4 C -0.193 4.193 5 C -0.017 4.017 6 C -0.175 4.175 7 C 0.109 3.891 8 O -0.359 6.359 9 C 0.042 3.958 10 C 0.518 3.482 11 O -0.533 6.533 12 N -0.699 5.699 13 C 0.126 3.874 14 H 0.090 0.910 15 C -0.187 4.187 16 C 0.164 3.836 17 H 0.067 0.933 18 N -0.704 5.704 19 C -0.242 4.242 20 H 0.074 0.926 21 C -0.012 4.012 22 N -0.936 5.936 23 Si 0.911 3.089 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.285 1.285 27 C -0.167 4.167 28 C 0.163 3.837 29 N -0.543 5.543 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.059 0.941 33 H 0.143 0.857 34 H 0.145 0.855 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.408 0.592 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.378 0.622 43 H 0.257 0.743 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.564 -13.803 -2.947 19.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.216 6.216 3 C 0.143 3.857 4 C -0.213 4.213 5 C -0.043 4.043 6 C -0.177 4.177 7 C 0.032 3.968 8 O -0.277 6.277 9 C -0.038 4.038 10 C 0.303 3.697 11 O -0.409 6.409 12 N -0.354 5.354 13 C 0.021 3.979 14 H 0.108 0.892 15 C -0.229 4.229 16 C 0.052 3.948 17 H 0.085 0.915 18 N -0.344 5.344 19 C -0.373 4.373 20 H 0.092 0.908 21 C -0.208 4.208 22 N -0.584 5.584 23 Si 0.742 3.258 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C -0.207 4.207 28 C 0.007 3.993 29 N -0.266 5.266 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.161 0.839 34 H 0.163 0.837 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.246 0.754 40 H 0.096 0.904 41 H 0.089 0.911 42 H 0.213 0.787 43 H 0.067 0.933 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.502 -14.765 -2.232 20.816 hybrid contribution 1.651 0.845 -1.073 2.143 sum -12.851 -13.920 -3.305 19.231 Atomic orbital electron populations 1.22864 0.77167 1.02915 1.02574 1.86235 1.23009 1.24622 1.87746 1.19900 0.89487 0.84719 0.91625 1.21064 0.91975 0.99571 1.08698 1.21386 1.00832 0.90613 0.91443 1.20414 0.94797 0.95370 1.07161 1.21179 0.99619 0.91517 0.84488 1.88063 1.82277 1.32338 1.25064 1.22250 0.99949 0.86385 0.95183 1.20115 0.77530 0.81767 0.90284 1.90684 1.49391 1.49079 1.51778 1.45744 1.62370 1.18771 1.08559 1.21752 0.98179 0.96275 0.81743 0.89166 1.24332 0.96131 1.02338 1.00119 1.21264 0.91987 0.93213 0.88374 0.91528 1.42195 1.13074 1.79105 1.00026 1.19258 0.89134 1.37059 0.91846 0.90843 1.24738 0.98338 1.02143 0.95535 1.69599 1.34929 1.55251 0.98637 0.86208 0.84062 0.78615 0.76936 1.21215 1.21664 1.21168 1.23858 1.00046 0.94768 1.01996 1.22324 0.92125 0.93652 0.91150 1.67350 1.40770 0.98731 1.19744 0.92278 0.88646 0.92187 0.83902 0.83738 0.91731 0.91809 0.89447 0.90053 0.75379 0.90416 0.91084 0.78657 0.93303 0.91047 0.89093 0.82161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.38 101.05 1.05 1.36 16 2 O -0.31 -3.31 10.48 -18.71 -0.20 -3.51 16 3 C 0.32 3.73 7.49 -17.12 -0.13 3.60 16 4 C -0.19 -1.98 10.04 -39.27 -0.39 -2.37 16 5 C -0.02 -0.18 9.85 -39.31 -0.39 -0.56 16 6 C -0.17 -1.89 5.53 -104.47 -0.58 -2.47 16 7 C 0.11 1.13 6.08 36.00 0.22 1.35 16 8 O -0.36 -5.17 9.86 -55.14 -0.54 -5.71 16 9 C 0.04 0.58 6.42 36.00 0.23 0.81 16 10 C 0.52 8.93 7.91 -10.99 -0.09 8.85 16 11 O -0.53 -11.09 16.12 -14.35 -0.23 -11.32 16 12 N -0.70 -11.74 5.12 -53.02 -0.27 -12.02 16 13 C 0.13 2.08 4.29 -67.12 -0.29 1.79 16 14 H 0.09 1.50 7.50 -51.92 -0.39 1.11 16 15 C -0.19 -3.27 7.70 -25.78 -0.20 -3.47 16 16 C 0.16 3.07 4.57 -66.98 -0.31 2.76 16 17 H 0.07 1.24 8.10 -51.93 -0.42 0.81 16 18 N -0.70 -16.16 5.18 -52.50 -0.27 -16.43 16 19 C -0.24 -6.31 9.97 -15.06 -0.15 -6.46 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 22 N -0.94 -25.88 13.06 55.49 0.72 -25.16 16 23 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 27 C -0.17 -2.58 7.58 -25.92 -0.20 -2.77 16 28 C 0.16 1.78 10.85 -17.56 -0.19 1.59 16 29 N -0.54 -6.46 9.22 -13.33 -0.12 -6.59 16 30 H 0.06 0.44 8.10 -51.93 -0.42 0.02 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.48 8.10 -51.93 -0.42 0.06 16 33 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.14 1.18 8.06 -52.49 -0.42 0.76 16 35 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 36 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 37 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.41 6.96 6.17 -40.82 -0.25 6.71 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 42 H 0.38 8.78 5.35 -40.82 -0.22 8.56 16 43 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 44 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.16 1.39 8.06 -52.48 -0.42 0.96 16 LS Contribution 390.89 15.07 5.89 5.89 Total: -1.00 -33.05 390.89 -8.28 -41.33 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -6.74 Total: 13.61 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.50 Total: 3.59 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.06 Total: -60.18 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: -0.97 Total: -20.54 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.05 -8.28 -41.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317114708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.133 kcal (2) G-P(sol) polarization free energy of solvation -33.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds