Wall clock time and date at job start Tue Mar 31 2020 19:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35671 * 116.99504 * 2 1 4 4 C 1.38928 * 119.67995 * 179.97438 * 3 2 1 5 5 C 1.38380 * 119.11015 * 180.02562 * 4 3 2 6 6 C 1.38829 * 118.48696 * 359.97438 * 5 4 3 7 7 C 1.50699 * 120.35826 * 180.02562 * 6 5 4 8 8 O 1.42900 * 109.47397 * 270.00229 * 7 6 5 9 9 C 1.42900 * 114.00318 * 179.97438 * 8 7 6 10 10 C 1.50697 * 109.47013 * 179.97438 * 9 8 7 11 11 O 1.21273 * 120.00424 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99722 * 179.97438 * 10 9 8 13 13 C 1.46494 * 120.00241 * 179.97438 * 12 10 9 14 14 H 1.09008 * 112.85049 * 334.67473 * 13 12 10 15 15 C 1.53781 * 113.61181 * 105.86670 * 13 12 10 16 16 C 1.54050 * 86.98702 * 89.16508 * 15 13 12 17 17 H 1.09001 * 113.61867 * 139.97479 * 16 15 13 18 18 N 1.46496 * 113.68806 * 270.87548 * 16 15 13 19 19 C 1.36941 * 119.99645 * 252.52536 * 18 16 15 20 20 H 1.07997 * 120.00535 * 0.02562 * 19 18 16 21 21 C 1.38811 * 119.99696 * 180.02562 * 19 18 16 22 22 N 1.31621 * 120.00304 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99880 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47202 * 60.00243 * 23 21 19 25 25 H 1.48509 * 109.46987 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47066 * 300.00090 * 23 21 19 27 27 C 1.53781 * 87.07613 * 25.43279 * 16 15 13 28 28 C 1.38052 * 119.28669 * 0.02562 * 6 5 4 29 29 N 1.31964 * 120.83627 * 359.97438 * 28 6 5 30 30 H 1.08998 * 109.47028 * 59.99983 * 1 2 3 31 31 H 1.08999 * 109.47031 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47517 * 299.99949 * 1 2 3 33 33 H 1.07995 * 120.44473 * 359.97438 * 4 3 2 34 34 H 1.08000 * 120.75741 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.46756 * 29.99821 * 7 6 5 36 36 H 1.08997 * 109.47325 * 150.00167 * 7 6 5 37 37 H 1.09003 * 109.46399 * 300.00164 * 9 8 7 38 38 H 1.09001 * 109.46694 * 59.99584 * 9 8 7 39 39 H 0.97005 * 119.99773 * 0.02562 * 12 10 9 40 40 H 1.09006 * 113.61244 * 203.66744 * 15 13 12 41 41 H 1.08999 * 113.61700 * 334.57129 * 15 13 12 42 42 H 0.96994 * 120.00152 * 72.53163 * 18 16 15 43 43 H 0.96999 * 120.00646 * 179.97438 * 22 21 19 44 44 H 1.08998 * 113.61333 * 220.02465 * 27 16 15 45 45 H 1.08996 * 113.69756 * 89.13170 * 27 16 15 46 46 H 1.08007 * 119.57949 * 180.25711 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 3.4326 1.2740 0.0005 5 6 4.0485 2.5132 0.0011 6 6 3.2504 3.6492 0.0005 7 6 3.8766 5.0199 0.0005 8 8 4.0741 5.4535 1.3477 9 6 4.6666 6.7490 1.4605 10 6 4.8268 7.1029 2.9165 11 8 4.4694 6.3226 3.7733 12 7 5.3684 8.2864 3.2666 13 6 5.5237 8.6309 4.6820 14 1 4.8123 8.1120 5.3245 15 6 6.9765 8.5496 5.1798 16 6 7.1202 10.0221 4.7509 17 1 7.6985 10.6262 5.4500 18 7 7.5515 10.1909 3.3611 19 6 8.8240 10.6155 3.0859 20 1 9.5098 10.8255 3.8934 21 6 9.2326 10.7759 1.7690 22 7 8.3968 10.5204 0.7848 23 14 10.9687 11.3543 1.3936 24 1 11.9452 10.3877 1.9569 25 1 11.1535 11.4435 -0.0773 26 1 11.1876 12.6909 2.0025 27 6 5.5993 10.1445 4.9431 28 6 1.8770 3.5096 0.0000 29 7 1.3185 2.3140 -0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 4.0229 0.3696 0.0014 34 1 5.1254 2.5948 0.0011 35 1 4.8374 4.9803 -0.5130 36 1 3.2184 5.7201 -0.5137 37 1 5.6437 6.7448 0.9774 38 1 4.0250 7.4852 0.9764 39 1 5.6546 8.9105 2.5813 40 1 7.0614 8.3980 6.2560 41 1 7.5975 7.8631 4.6044 42 1 6.9358 10.0020 2.6358 43 1 8.6821 10.6328 -0.1354 44 1 5.1093 10.7448 4.1765 45 1 5.3070 10.4284 5.9540 46 1 1.2516 4.3902 -0.0047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317114708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:21:26 Heat of formation + Delta-G solvation = -60.565952 kcal Electronic energy + Delta-G solvation = -27774.615657 eV Core-core repulsion = 23665.535586 eV Total energy + Delta-G solvation = -4109.080071 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.69089 -41.24571 -39.69762 -39.10622 -38.09694 -35.46303 -34.17101 -33.78844 -32.61926 -31.83775 -29.36948 -28.34467 -26.61777 -26.51199 -26.12323 -24.49387 -24.11406 -22.97650 -21.65169 -20.44639 -19.44571 -19.26067 -18.34780 -18.24759 -17.71631 -17.10599 -17.02596 -16.84716 -16.61893 -16.31863 -15.88829 -15.57518 -15.50264 -15.41085 -15.08283 -14.80312 -14.65840 -14.38406 -14.14045 -13.64280 -13.49125 -13.38618 -13.20541 -13.02879 -12.82830 -12.75305 -12.55087 -12.43858 -12.18620 -12.13541 -11.75906 -11.68719 -11.14306 -10.98088 -10.84962 -10.83546 -10.77813 -10.60863 -9.95753 -9.53095 -8.98933 -7.94174 -5.20876 0.01779 0.20049 1.51574 1.52286 1.56011 1.58029 1.85766 2.09392 2.56746 2.63236 3.14672 3.29766 3.38720 3.61117 3.73601 3.87053 3.89305 3.90506 3.96354 4.03946 4.16427 4.25107 4.29907 4.34589 4.40488 4.40950 4.42536 4.50539 4.51605 4.72690 4.75421 4.85366 4.88624 4.90543 4.98366 5.09070 5.24583 5.24966 5.37908 5.39451 5.54787 5.71872 6.02324 6.16450 6.30332 6.54314 6.75034 7.20870 7.36979 8.09457 8.33419 9.28509 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.002060 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.573551 B =13592.015582 C =14749.250643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.320 6.320 3 C 0.304 3.696 4 C -0.198 4.198 5 C -0.022 4.022 6 C -0.185 4.185 7 C 0.106 3.894 8 O -0.387 6.387 9 C 0.048 3.952 10 C 0.513 3.487 11 O -0.574 6.574 12 N -0.698 5.698 13 C 0.122 3.878 14 H 0.093 0.907 15 C -0.179 4.179 16 C 0.147 3.853 17 H 0.069 0.931 18 N -0.714 5.714 19 C -0.245 4.245 20 H 0.074 0.926 21 C -0.067 4.067 22 N -0.961 5.961 23 Si 0.968 3.032 24 H -0.284 1.284 25 H -0.296 1.296 26 H -0.280 1.280 27 C -0.143 4.143 28 C 0.153 3.847 29 N -0.558 5.558 30 H 0.058 0.942 31 H 0.124 0.876 32 H 0.053 0.947 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.407 0.593 40 H 0.104 0.896 41 H 0.039 0.961 42 H 0.374 0.626 43 H 0.253 0.747 44 H 0.069 0.931 45 H 0.125 0.875 46 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.707 -13.482 -2.713 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.227 6.227 3 C 0.125 3.875 4 C -0.218 4.218 5 C -0.048 4.048 6 C -0.188 4.188 7 C 0.030 3.970 8 O -0.306 6.306 9 C -0.032 4.032 10 C 0.300 3.700 11 O -0.453 6.453 12 N -0.352 5.352 13 C 0.017 3.983 14 H 0.111 0.889 15 C -0.221 4.221 16 C 0.036 3.964 17 H 0.087 0.913 18 N -0.355 5.355 19 C -0.377 4.377 20 H 0.092 0.908 21 C -0.260 4.260 22 N -0.611 5.611 23 Si 0.797 3.203 24 H -0.211 1.211 25 H -0.222 1.222 26 H -0.207 1.207 27 C -0.182 4.182 28 C -0.003 4.003 29 N -0.282 5.282 30 H 0.077 0.923 31 H 0.142 0.858 32 H 0.071 0.929 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.129 0.871 39 H 0.245 0.755 40 H 0.122 0.878 41 H 0.058 0.942 42 H 0.209 0.791 43 H 0.062 0.938 44 H 0.088 0.912 45 H 0.144 0.856 46 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -14.650 -14.436 -1.968 20.662 hybrid contribution 1.665 0.703 -1.071 2.101 sum -12.986 -13.733 -3.039 19.143 Atomic orbital electron populations 1.23058 0.75853 1.04700 1.02196 1.86222 1.24406 1.24369 1.87709 1.20214 0.90209 0.84977 0.92072 1.21326 0.91793 1.00438 1.08242 1.21685 1.01802 0.90455 0.90818 1.20582 0.94942 0.95895 1.07333 1.21387 1.00920 0.91659 0.83016 1.88022 1.82469 1.32571 1.27562 1.22244 1.01092 0.87156 0.92678 1.20783 0.76465 0.81149 0.91628 1.90656 1.51249 1.50171 1.53257 1.45811 1.61896 1.18727 1.08737 1.21829 0.97465 0.97238 0.81778 0.88930 1.24267 0.96176 1.00366 1.01309 1.21526 0.94410 0.94023 0.86402 0.91258 1.42303 1.12177 1.79218 1.01766 1.19580 0.90401 1.35808 0.91906 0.90767 1.25409 1.01459 1.03394 0.95706 1.69712 1.36136 1.56717 0.98499 0.85305 0.80522 0.78215 0.76208 1.21100 1.22186 1.20653 1.23750 0.96866 0.93682 1.03920 1.22674 0.92668 0.93952 0.90965 1.67356 1.41319 0.99172 1.20364 0.92327 0.85819 0.92855 0.82192 0.82019 0.90338 0.89506 0.88709 0.87091 0.75479 0.87784 0.94195 0.79083 0.93839 0.91216 0.85638 0.80500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.38 113.37 1.18 1.72 16 2 O -0.32 -6.76 10.48 -89.88 -0.94 -7.70 16 3 C 0.30 7.01 7.49 84.80 0.63 7.65 16 4 C -0.20 -3.95 10.04 22.47 0.23 -3.73 16 5 C -0.02 -0.44 9.85 22.45 0.22 -0.21 16 6 C -0.19 -3.84 5.53 -19.77 -0.11 -3.95 16 7 C 0.11 2.04 6.08 71.24 0.43 2.47 16 8 O -0.39 -10.75 9.86 -129.94 -1.28 -12.03 16 9 C 0.05 1.25 6.42 71.23 0.46 1.70 16 10 C 0.51 17.45 7.91 87.66 0.69 18.15 16 11 O -0.57 -23.91 16.12 16.03 0.26 -23.65 16 12 N -0.70 -22.96 5.12 -440.05 -2.25 -25.21 16 13 C 0.12 3.87 4.29 45.52 0.20 4.06 16 14 H 0.09 2.94 7.50 -2.38 -0.02 2.92 16 15 C -0.18 -6.05 7.70 31.21 0.24 -5.81 16 16 C 0.15 5.28 4.57 45.61 0.21 5.49 16 17 H 0.07 2.45 8.10 -2.39 -0.02 2.43 16 18 N -0.71 -32.40 5.18 -320.02 -1.66 -34.06 16 19 C -0.25 -12.67 9.97 84.03 0.84 -11.83 16 20 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 21 C -0.07 -3.55 5.50 84.86 0.47 -3.08 16 22 N -0.96 -53.11 13.06 21.65 0.28 -52.83 16 23 Si 0.97 43.65 29.55 68.60 2.03 45.67 16 24 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 26 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 27 C -0.14 -4.06 7.58 31.12 0.24 -3.83 16 28 C 0.15 3.25 10.85 84.63 0.92 4.16 16 29 N -0.56 -13.24 9.22 -308.95 -2.85 -16.08 16 30 H 0.06 0.87 8.10 -2.39 -0.02 0.85 16 31 H 0.12 1.07 8.14 -2.39 -0.02 1.06 16 32 H 0.05 0.86 8.10 -2.39 -0.02 0.84 16 33 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 34 H 0.16 2.44 8.06 -2.91 -0.02 2.42 16 35 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 36 H 0.09 1.24 8.09 -2.39 -0.02 1.22 16 37 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.41 13.67 6.17 -92.70 -0.57 13.10 16 40 H 0.10 2.93 8.14 -2.38 -0.02 2.91 16 41 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.37 17.30 5.35 -92.71 -0.50 16.80 16 43 H 0.25 13.68 8.31 -92.71 -0.77 12.91 16 44 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.13 2.73 8.14 -2.39 -0.02 2.71 16 46 H 0.18 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -70.95 390.89 0.36 -70.60 By element: Atomic # 1 Polarization: 42.39 SS G_CDS: -0.06 Total: 42.33 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 6.84 Total: 12.96 kcal Atomic # 7 Polarization: -121.70 SS G_CDS: -6.48 Total: -128.18 kcal Atomic # 8 Polarization: -41.42 SS G_CDS: -1.96 Total: -43.38 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -70.95 0.36 -70.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317114708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.029 kcal (2) G-P(sol) polarization free energy of solvation -70.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds