Wall clock time and date at job start Tue Mar 31 2020 18:24:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46756 * 110.99876 * 2 1 4 4 C 1.53423 * 108.58425 * 175.01599 * 3 2 1 5 5 O 1.43118 * 107.90389 * 296.67666 * 4 3 2 6 6 C 1.36007 * 116.72459 * 45.47394 * 5 4 3 7 7 C 1.39079 * 118.58946 * 165.18951 * 6 5 4 8 8 C 1.37701 * 120.40978 * 179.52007 * 7 6 5 9 9 C 1.39698 * 119.88175 * 0.03427 * 8 7 6 10 10 C 1.47614 * 120.09485 * 180.10220 * 9 8 7 11 11 O 1.21590 * 119.99927 * 179.97438 * 10 9 8 12 12 N 1.34773 * 119.99963 * 359.97438 * 10 9 8 13 13 C 1.46507 * 119.99767 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.46849 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.47347 * 60.00321 * 14 13 12 16 16 O 1.42898 * 109.47314 * 299.99861 * 14 13 12 17 17 C 1.53005 * 109.46921 * 180.02562 * 14 13 12 18 18 N 1.46503 * 109.47100 * 185.00183 * 17 14 13 19 19 C 1.36934 * 119.99966 * 179.97438 * 18 17 14 20 20 H 1.07996 * 120.00297 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99900 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99674 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99934 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.46993 * 90.00235 * 23 21 19 25 25 H 1.48497 * 109.46787 * 209.99890 * 23 21 19 26 26 H 1.48500 * 109.47103 * 329.99977 * 23 21 19 27 27 C 1.39552 * 119.80896 * 0.08653 * 9 8 7 28 28 C 1.38731 * 120.12570 * 359.95748 * 27 9 8 29 29 H 1.09005 * 109.47232 * 56.04960 * 1 2 3 30 30 H 1.08998 * 109.46938 * 176.04886 * 1 2 3 31 31 H 1.08998 * 109.47155 * 296.04997 * 1 2 3 32 32 H 1.09003 * 109.61751 * 294.74598 * 3 2 1 33 33 H 1.09000 * 109.61849 * 55.28824 * 3 2 1 34 34 H 1.09000 * 109.76770 * 56.27917 * 4 3 2 35 35 H 1.08992 * 109.77433 * 177.07757 * 4 3 2 36 36 H 1.07999 * 119.79570 * 359.52256 * 7 6 5 37 37 H 1.07997 * 120.05842 * 180.02562 * 8 7 6 38 38 H 0.96996 * 120.00600 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.46883 * 300.00135 * 13 12 10 40 40 H 1.09000 * 109.46883 * 59.99760 * 13 12 10 41 41 H 0.96701 * 114.00184 * 299.99849 * 16 14 13 42 42 H 1.08998 * 109.47032 * 305.00023 * 17 14 13 43 43 H 1.08991 * 109.47064 * 65.00078 * 17 14 13 44 44 H 0.97002 * 119.99643 * 0.02562 * 18 17 14 45 45 H 0.97002 * 119.99572 * 180.02562 * 22 21 19 46 46 H 1.08003 * 119.93925 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9949 1.3701 0.0000 4 6 3.5226 1.3074 0.1263 5 8 3.8356 0.7167 1.3918 6 6 3.1362 -0.3977 1.7363 7 6 3.6054 -1.1798 2.7863 8 6 2.9213 -2.3106 3.1729 9 6 1.7490 -2.6766 2.5071 10 6 1.0107 -3.8866 2.9191 11 8 -0.0097 -4.2033 2.3387 12 7 1.4677 -4.6404 3.9386 13 6 0.7346 -5.8410 4.3478 14 6 1.4613 -6.5084 5.5171 15 1 1.5166 -5.8133 6.3549 16 8 2.7825 -6.8720 5.1119 17 6 0.6961 -7.7626 5.9441 18 7 1.3238 -8.3350 7.1377 19 6 0.8081 -9.4695 7.7052 20 1 -0.0611 -9.9426 7.2728 21 6 1.4033 -10.0122 8.8358 22 7 0.9079 -11.1029 9.3810 23 14 2.9072 -9.1943 9.5835 24 1 2.4763 -8.1950 10.5938 25 1 3.7570 -10.2228 10.2356 26 1 3.6837 -8.5152 8.5153 27 6 1.2777 -1.8947 1.4516 28 6 1.9704 -0.7567 1.0647 29 1 -0.3634 0.5739 -0.8525 30 1 -0.3633 -1.0252 -0.0708 31 1 -0.3633 0.4513 0.9232 32 1 1.7248 1.8658 -0.9325 33 1 1.5802 1.9213 0.8440 34 1 3.9343 0.6971 -0.6775 35 1 3.9384 2.3137 0.0762 36 1 4.5118 -0.8985 3.3017 37 1 3.2905 -2.9136 3.9893 38 1 2.2819 -4.3880 4.4014 39 1 -0.2733 -5.5637 4.6565 40 1 0.6797 -6.5363 3.5101 41 1 2.8098 -7.4902 4.3688 42 1 -0.3375 -7.4989 6.1682 43 1 0.7175 -8.4939 5.1362 44 1 2.1043 -7.9099 7.5263 45 1 1.3236 -11.4819 10.1713 46 1 0.3718 -2.1759 0.9351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320237293.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:32 Heat of formation + Delta-G solvation = -63.909614 kcal Electronic energy + Delta-G solvation = -28075.031830 eV Core-core repulsion = 23965.806767 eV Total energy + Delta-G solvation = -4109.225063 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.60078 -39.96917 -38.00812 -37.47179 -37.03189 -34.56348 -34.15141 -31.74237 -31.37872 -30.95047 -29.81301 -29.12267 -26.37678 -25.29609 -24.90763 -22.89089 -22.09596 -21.79257 -21.43006 -20.00103 -18.84945 -18.05680 -17.70410 -17.38127 -16.71991 -16.11590 -16.08983 -15.65772 -15.42216 -15.11361 -14.95267 -14.73568 -14.54527 -14.50930 -14.11924 -13.94853 -13.73672 -13.54037 -13.26628 -12.96801 -12.76704 -12.58534 -12.41148 -12.32631 -12.08043 -12.00625 -11.47141 -11.31189 -11.18250 -10.87329 -10.81773 -10.46153 -10.23092 -10.15153 -9.76030 -9.56355 -9.23180 -8.94287 -8.91986 -8.13351 -7.26440 -5.78035 -3.14340 0.52241 0.89188 2.48114 2.78030 2.92361 3.14346 3.39272 3.44931 3.46729 3.55855 3.92300 4.12764 4.37966 4.43545 4.47040 4.56459 4.59871 4.65210 4.76211 4.76719 4.83108 4.85188 4.87869 5.02486 5.09708 5.12121 5.29968 5.38479 5.45438 5.50906 5.52841 5.67110 5.75098 5.77054 5.86114 5.92946 6.03636 6.28470 6.29366 6.41611 6.43395 6.54274 6.88826 7.37273 7.76551 7.97605 8.07747 8.40380 9.19755 9.91695 10.11243 11.39950 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027278 B = 0.001942 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.222686 B =14414.351544 C =15250.205154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.490 5.490 3 C 0.012 3.988 4 C 0.057 3.943 5 O -0.311 6.311 6 C 0.113 3.887 7 C -0.130 4.130 8 C -0.075 4.075 9 C -0.139 4.139 10 C 0.560 3.440 11 O -0.542 6.542 12 N -0.716 5.716 13 C 0.090 3.910 14 C 0.084 3.916 15 H 0.105 0.895 16 O -0.557 6.557 17 C 0.131 3.869 18 N -0.749 5.749 19 C -0.248 4.248 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.933 5.933 23 Si 0.884 3.116 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.273 1.273 27 C -0.063 4.063 28 C 0.032 3.968 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.117 0.883 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.404 0.596 39 H 0.081 0.919 40 H 0.075 0.925 41 H 0.376 0.624 42 H 0.038 0.962 43 H 0.032 0.968 44 H 0.366 0.634 45 H 0.260 0.740 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.445 29.341 -21.222 36.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.206 5.206 3 C -0.115 4.115 4 C -0.018 4.018 5 O -0.225 6.225 6 C 0.065 3.935 7 C -0.149 4.149 8 C -0.094 4.094 9 C -0.143 4.143 10 C 0.347 3.653 11 O -0.420 6.420 12 N -0.368 5.368 13 C -0.034 4.034 14 C 0.025 3.975 15 H 0.123 0.877 16 O -0.362 6.362 17 C 0.003 3.997 18 N -0.396 5.396 19 C -0.378 4.378 20 H 0.107 0.893 21 C -0.191 4.191 22 N -0.580 5.580 23 Si 0.714 3.286 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.198 1.198 27 C -0.085 4.085 28 C -0.066 4.066 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.121 0.879 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.135 0.865 36 H 0.158 0.842 37 H 0.154 0.846 38 H 0.241 0.759 39 H 0.099 0.901 40 H 0.093 0.907 41 H 0.224 0.776 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.199 0.801 45 H 0.070 0.930 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.984 29.228 -21.476 36.488 hybrid contribution 0.861 0.512 0.791 1.277 sum 4.846 29.740 -20.685 36.549 Atomic orbital electron populations 1.22612 0.84036 1.04086 1.01780 1.58869 1.09653 1.12578 1.39513 1.22854 0.96186 0.88737 1.03708 1.23208 0.94280 0.99870 0.84461 1.86216 1.59926 1.39033 1.37301 1.18906 0.91237 0.87860 0.95520 1.20383 1.01756 0.94674 0.98083 1.21073 0.93556 0.95918 0.98897 1.19673 0.97587 0.97445 0.99577 1.18109 0.84459 0.82852 0.79849 1.90781 1.24775 1.71859 1.54632 1.45807 1.29208 1.26816 1.35008 1.22103 0.96519 0.86566 0.98235 1.22462 0.83121 0.96893 0.95067 0.87730 1.86543 1.26830 1.67419 1.55409 1.21176 0.95707 0.92071 0.90750 1.42569 1.34718 1.31567 1.30699 1.19043 1.10693 1.00572 1.07492 0.89250 1.24679 0.98975 0.97317 0.98087 1.69709 1.42482 1.22148 1.23712 0.86533 0.83866 0.78840 0.79324 1.21112 1.21742 1.19838 1.20986 0.99756 0.92267 0.95448 1.18776 0.96217 0.97587 0.94038 0.90179 0.89627 0.93974 0.87872 0.92250 0.90343 0.86477 0.84202 0.84602 0.75949 0.90080 0.90696 0.77603 0.94415 0.94995 0.80111 0.93019 0.83755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 8.98 60.07 0.54 0.67 16 2 N -0.49 -3.82 4.89 -178.68 -0.87 -4.69 16 3 C 0.01 0.06 5.72 -3.68 -0.02 0.04 16 4 C 0.06 0.31 7.25 37.38 0.27 0.58 16 5 O -0.31 -2.70 10.39 -19.76 -0.21 -2.90 16 6 C 0.11 1.08 6.48 -38.89 -0.25 0.83 16 7 C -0.13 -1.14 9.91 -39.47 -0.39 -1.53 16 8 C -0.07 -0.66 9.53 -39.23 -0.37 -1.04 16 9 C -0.14 -1.51 5.87 -105.04 -0.62 -2.13 16 10 C 0.56 7.17 7.76 -12.44 -0.10 7.07 16 11 O -0.54 -8.71 16.33 5.29 0.09 -8.62 16 12 N -0.72 -8.04 5.40 -61.32 -0.33 -8.37 16 13 C 0.09 1.10 5.34 -4.04 -0.02 1.08 16 14 C 0.08 1.17 3.09 -26.73 -0.08 1.09 16 15 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 16 O -0.56 -7.83 13.03 -35.23 -0.46 -8.29 16 17 C 0.13 2.38 5.90 -4.04 -0.02 2.35 16 18 N -0.75 -17.60 5.35 -59.91 -0.32 -17.92 16 19 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 20 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 21 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 22 N -0.93 -29.41 13.97 55.49 0.78 -28.64 16 23 Si 0.88 22.24 27.74 -169.99 -4.71 17.53 16 24 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 26 H -0.27 -6.53 6.52 56.52 0.37 -6.16 16 27 C -0.06 -0.67 8.61 -38.91 -0.33 -1.01 16 28 C 0.03 0.30 5.82 -83.61 -0.49 -0.18 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.57 6.09 -51.93 -0.32 0.25 16 31 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.12 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 37 H 0.14 0.93 6.40 -52.49 -0.34 0.60 16 38 H 0.40 3.83 6.37 -40.82 -0.26 3.57 16 39 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.38 4.36 9.04 45.56 0.41 4.77 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.37 8.53 5.53 -40.82 -0.23 8.31 16 45 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 46 H 0.14 1.54 5.56 -52.48 -0.29 1.25 16 LS Contribution 377.03 15.07 5.68 5.68 Total: -1.00 -36.17 377.03 -8.19 -44.36 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -5.68 Total: 11.17 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -2.14 Total: 0.69 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: -0.75 Total: -59.62 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.58 Total: -19.81 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.53 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -36.17 -8.19 -44.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320237293.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.550 kcal (2) G-P(sol) polarization free energy of solvation -36.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds