Wall clock time and date at job start Tue Mar 31 2020 18:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46756 * 110.99876 * 2 1 4 4 C 1.53423 * 108.58425 * 175.01599 * 3 2 1 5 5 O 1.43118 * 107.90389 * 296.67666 * 4 3 2 6 6 C 1.36007 * 116.72459 * 45.47394 * 5 4 3 7 7 C 1.39079 * 118.58946 * 165.18951 * 6 5 4 8 8 C 1.37701 * 120.40978 * 179.52007 * 7 6 5 9 9 C 1.39698 * 119.88175 * 0.03427 * 8 7 6 10 10 C 1.47614 * 120.09485 * 180.10220 * 9 8 7 11 11 O 1.21590 * 119.99927 * 179.97438 * 10 9 8 12 12 N 1.34773 * 119.99963 * 359.97438 * 10 9 8 13 13 C 1.46507 * 119.99767 * 179.97438 * 12 10 9 14 14 C 1.52995 * 109.46849 * 179.97438 * 13 12 10 15 15 H 1.09000 * 109.47347 * 60.00321 * 14 13 12 16 16 O 1.42898 * 109.47314 * 299.99861 * 14 13 12 17 17 C 1.53005 * 109.46921 * 180.02562 * 14 13 12 18 18 N 1.46503 * 109.47100 * 185.00183 * 17 14 13 19 19 C 1.36934 * 119.99966 * 179.97438 * 18 17 14 20 20 H 1.07996 * 120.00297 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99900 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99674 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 119.99934 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.46993 * 90.00235 * 23 21 19 25 25 H 1.48497 * 109.46787 * 209.99890 * 23 21 19 26 26 H 1.48500 * 109.47103 * 329.99977 * 23 21 19 27 27 C 1.39552 * 119.80896 * 0.08653 * 9 8 7 28 28 C 1.38731 * 120.12570 * 359.95748 * 27 9 8 29 29 H 1.09005 * 109.47232 * 56.04960 * 1 2 3 30 30 H 1.08998 * 109.46938 * 176.04886 * 1 2 3 31 31 H 1.08998 * 109.47155 * 296.04997 * 1 2 3 32 32 H 1.09003 * 109.61751 * 294.74598 * 3 2 1 33 33 H 1.09000 * 109.61849 * 55.28824 * 3 2 1 34 34 H 1.09000 * 109.76770 * 56.27917 * 4 3 2 35 35 H 1.08992 * 109.77433 * 177.07757 * 4 3 2 36 36 H 1.07999 * 119.79570 * 359.52256 * 7 6 5 37 37 H 1.07997 * 120.05842 * 180.02562 * 8 7 6 38 38 H 0.96996 * 120.00600 * 359.97438 * 12 10 9 39 39 H 1.09001 * 109.46883 * 300.00135 * 13 12 10 40 40 H 1.09000 * 109.46883 * 59.99760 * 13 12 10 41 41 H 0.96701 * 114.00184 * 299.99849 * 16 14 13 42 42 H 1.08998 * 109.47032 * 305.00023 * 17 14 13 43 43 H 1.08991 * 109.47064 * 65.00078 * 17 14 13 44 44 H 0.97002 * 119.99643 * 0.02562 * 18 17 14 45 45 H 0.97002 * 119.99572 * 180.02562 * 22 21 19 46 46 H 1.08003 * 119.93925 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9949 1.3701 0.0000 4 6 3.5226 1.3074 0.1263 5 8 3.8356 0.7167 1.3918 6 6 3.1362 -0.3977 1.7363 7 6 3.6054 -1.1798 2.7863 8 6 2.9213 -2.3106 3.1729 9 6 1.7490 -2.6766 2.5071 10 6 1.0107 -3.8866 2.9191 11 8 -0.0097 -4.2033 2.3387 12 7 1.4677 -4.6404 3.9386 13 6 0.7346 -5.8410 4.3478 14 6 1.4613 -6.5084 5.5171 15 1 1.5166 -5.8133 6.3549 16 8 2.7825 -6.8720 5.1119 17 6 0.6961 -7.7626 5.9441 18 7 1.3238 -8.3350 7.1377 19 6 0.8081 -9.4695 7.7052 20 1 -0.0611 -9.9426 7.2728 21 6 1.4033 -10.0122 8.8358 22 7 0.9079 -11.1029 9.3810 23 14 2.9072 -9.1943 9.5835 24 1 2.4763 -8.1950 10.5938 25 1 3.7570 -10.2228 10.2356 26 1 3.6837 -8.5152 8.5153 27 6 1.2777 -1.8947 1.4516 28 6 1.9704 -0.7567 1.0647 29 1 -0.3634 0.5739 -0.8525 30 1 -0.3633 -1.0252 -0.0708 31 1 -0.3633 0.4513 0.9232 32 1 1.7248 1.8658 -0.9325 33 1 1.5802 1.9213 0.8440 34 1 3.9343 0.6971 -0.6775 35 1 3.9384 2.3137 0.0762 36 1 4.5118 -0.8985 3.3017 37 1 3.2905 -2.9136 3.9893 38 1 2.2819 -4.3880 4.4014 39 1 -0.2733 -5.5637 4.6565 40 1 0.6797 -6.5363 3.5101 41 1 2.8098 -7.4902 4.3688 42 1 -0.3375 -7.4989 6.1682 43 1 0.7175 -8.4939 5.1362 44 1 2.1043 -7.9099 7.5263 45 1 1.3236 -11.4819 10.1713 46 1 0.3718 -2.1759 0.9351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320237293.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:24:31 Heat of formation + Delta-G solvation = -94.312893 kcal Electronic energy + Delta-G solvation = -28076.350215 eV Core-core repulsion = 23965.806767 eV Total energy + Delta-G solvation = -4110.543448 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.22265 -40.90979 -39.09564 -38.23763 -37.67000 -36.21488 -35.36401 -33.49100 -32.29384 -31.63219 -30.85344 -29.97643 -27.53645 -26.20725 -25.59491 -24.20042 -23.17284 -22.84522 -22.49409 -20.82375 -19.79551 -19.49918 -18.74276 -18.09974 -17.58045 -17.22519 -16.99141 -16.54368 -16.52170 -16.15377 -15.88899 -15.61925 -15.43081 -15.41631 -15.15184 -15.11207 -14.75047 -14.64863 -14.30766 -14.19431 -13.99811 -13.54238 -13.35663 -13.21672 -13.11286 -12.85413 -12.79773 -12.63790 -12.22822 -12.05553 -11.87585 -11.82086 -11.75297 -11.28729 -11.05638 -11.02419 -10.89856 -10.22003 -9.63278 -9.31250 -8.76274 -8.03055 -5.36917 -0.24138 0.20870 1.40911 1.43511 1.51902 1.69305 2.00889 2.18094 2.49511 2.53592 2.80946 3.26725 3.36586 3.41056 3.51723 3.59550 3.69491 3.95541 3.98527 4.03760 4.08379 4.09753 4.17102 4.23116 4.26672 4.38225 4.44166 4.60698 4.61511 4.66696 4.72333 4.74478 4.85681 4.91623 4.93834 5.04632 5.18370 5.22446 5.28551 5.42178 5.74164 5.74344 5.84550 6.20242 6.27181 6.46947 6.76559 7.07958 7.13385 7.83132 8.02604 9.18130 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027278 B = 0.001942 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.222686 B =14414.351544 C =15250.205154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.501 5.501 3 C 0.011 3.989 4 C 0.051 3.949 5 O -0.322 6.322 6 C 0.105 3.895 7 C -0.133 4.133 8 C -0.069 4.069 9 C -0.155 4.155 10 C 0.560 3.440 11 O -0.582 6.582 12 N -0.704 5.704 13 C 0.099 3.901 14 C 0.106 3.894 15 H 0.112 0.888 16 O -0.562 6.562 17 C 0.124 3.876 18 N -0.752 5.752 19 C -0.238 4.238 20 H 0.056 0.944 21 C -0.065 4.065 22 N -0.983 5.983 23 Si 0.958 3.042 24 H -0.277 1.277 25 H -0.297 1.297 26 H -0.250 1.250 27 C -0.077 4.077 28 C 0.026 3.974 29 H 0.102 0.898 30 H 0.074 0.926 31 H 0.039 0.961 32 H 0.129 0.871 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.149 0.851 36 H 0.160 0.840 37 H 0.158 0.842 38 H 0.415 0.585 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.388 0.612 42 H 0.039 0.961 43 H 0.035 0.965 44 H 0.369 0.631 45 H 0.258 0.742 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.514 32.232 -21.936 39.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.217 5.217 3 C -0.115 4.115 4 C -0.024 4.024 5 O -0.235 6.235 6 C 0.057 3.943 7 C -0.152 4.152 8 C -0.088 4.088 9 C -0.159 4.159 10 C 0.349 3.651 11 O -0.464 6.464 12 N -0.357 5.357 13 C -0.025 4.025 14 C 0.046 3.954 15 H 0.130 0.870 16 O -0.369 6.369 17 C -0.003 4.003 18 N -0.398 5.398 19 C -0.369 4.369 20 H 0.074 0.926 21 C -0.256 4.256 22 N -0.634 5.634 23 Si 0.785 3.215 24 H -0.203 1.203 25 H -0.224 1.224 26 H -0.174 1.174 27 C -0.098 4.098 28 C -0.072 4.072 29 H 0.120 0.880 30 H 0.093 0.907 31 H 0.057 0.943 32 H 0.147 0.853 33 H 0.076 0.924 34 H 0.095 0.905 35 H 0.166 0.834 36 H 0.177 0.823 37 H 0.175 0.825 38 H 0.254 0.746 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.237 0.763 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.203 0.797 45 H 0.067 0.933 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 6.074 32.170 -22.234 39.575 hybrid contribution 0.155 -0.338 0.866 0.943 sum 6.229 31.833 -21.367 38.842 Atomic orbital electron populations 1.22638 0.83399 1.03822 1.02604 1.58926 1.10338 1.13832 1.38583 1.23006 0.96053 0.87451 1.05020 1.23523 0.94513 1.01210 0.83134 1.86204 1.59934 1.38609 1.38789 1.19136 0.91247 0.88262 0.95646 1.20662 1.02261 0.94353 0.97883 1.21255 0.92554 0.96083 0.98919 1.19594 0.98586 0.97110 1.00561 1.18405 0.83981 0.83222 0.79491 1.90757 1.26608 1.72963 1.56053 1.45654 1.29319 1.26116 1.34569 1.21895 0.96224 0.86876 0.97532 1.22148 0.82667 0.94808 0.95765 0.87026 1.86522 1.26466 1.67830 1.56104 1.21401 0.96127 0.93929 0.88875 1.42540 1.34907 1.30306 1.32063 1.19041 1.09332 1.01445 1.07094 0.92578 1.25548 1.02779 0.98267 0.99046 1.69893 1.44588 1.24320 1.24560 0.85358 0.79688 0.77671 0.78781 1.20332 1.22365 1.17427 1.20995 0.99910 0.93041 0.95889 1.18901 0.96326 0.97530 0.94415 0.87961 0.90734 0.94250 0.85257 0.92395 0.90461 0.83379 0.82287 0.82477 0.74646 0.90371 0.90747 0.76262 0.94329 0.94736 0.79707 0.93312 0.84717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 8.98 127.69 1.15 1.39 16 2 N -0.50 -7.27 4.89 -719.21 -3.52 -10.78 16 3 C 0.01 0.09 5.72 86.47 0.49 0.59 16 4 C 0.05 0.43 7.25 72.12 0.52 0.95 16 5 O -0.32 -4.95 10.39 -93.63 -0.97 -5.93 16 6 C 0.11 1.88 6.48 22.72 0.15 2.02 16 7 C -0.13 -2.07 9.91 22.34 0.22 -1.85 16 8 C -0.07 -1.10 9.53 22.50 0.21 -0.88 16 9 C -0.15 -3.27 5.87 -20.13 -0.12 -3.39 16 10 C 0.56 14.06 7.76 86.72 0.67 14.74 16 11 O -0.58 -18.98 16.33 -4.00 -0.07 -19.04 16 12 N -0.70 -14.64 5.40 -466.18 -2.52 -17.16 16 13 C 0.10 2.28 5.34 86.38 0.46 2.74 16 14 C 0.11 2.71 3.09 30.59 0.09 2.80 16 15 H 0.11 2.77 8.14 -2.39 -0.02 2.75 16 16 O -0.56 -14.18 13.03 -148.98 -1.94 -16.12 16 17 C 0.12 4.33 5.90 86.38 0.51 4.84 16 18 N -0.75 -34.33 5.35 -343.45 -1.84 -36.17 16 19 C -0.24 -13.60 10.47 84.03 0.88 -12.72 16 20 H 0.06 3.51 8.06 -2.91 -0.02 3.48 16 21 C -0.06 -3.84 5.50 84.86 0.47 -3.37 16 22 N -0.98 -63.32 13.97 21.65 0.30 -63.02 16 23 Si 0.96 45.59 27.74 68.60 1.90 47.49 16 24 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 25 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 26 H -0.25 -10.82 6.52 99.48 0.65 -10.18 16 27 C -0.08 -1.64 8.61 22.71 0.20 -1.45 16 28 C 0.03 0.49 5.82 38.21 0.22 0.72 16 29 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.07 1.03 6.09 -2.39 -0.01 1.02 16 31 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.13 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.06 0.53 8.13 -2.39 -0.02 0.51 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.15 0.27 8.14 -2.39 -0.02 0.25 16 36 H 0.16 1.80 8.06 -2.91 -0.02 1.77 16 37 H 0.16 1.71 6.40 -2.91 -0.02 1.69 16 38 H 0.42 6.79 6.37 -92.71 -0.59 6.20 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.39 7.95 9.04 -74.06 -0.67 7.28 16 42 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.37 16.27 5.53 -92.71 -0.51 15.76 16 45 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 46 H 0.14 3.05 5.56 -2.91 -0.02 3.03 16 Total: -1.00 -79.06 377.03 -3.31 -82.36 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: -0.79 Total: 31.23 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 6.13 Total: 7.12 kcal Atomic # 7 Polarization: -119.56 SS G_CDS: -7.57 Total: -127.13 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -2.98 Total: -41.08 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.49 kcal Total: -79.06 -3.31 -82.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320237293.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.949 kcal (2) G-P(sol) polarization free energy of solvation -79.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds