Wall clock time and date at job start Tue Mar 31 2020 18:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34607 * 119.47774 * 2 1 4 4 C 1.37996 * 120.45706 * 180.28427 * 3 2 1 5 5 C 1.47455 * 120.25309 * 179.70838 * 4 3 2 6 6 O 1.21607 * 120.00331 * 359.72496 * 5 4 3 7 7 N 1.34773 * 119.99881 * 179.72174 * 5 4 3 8 8 C 1.46500 * 120.00537 * 174.97430 * 7 5 4 9 9 C 1.53007 * 109.49455 * 60.08415 * 8 7 5 10 10 O 1.42904 * 109.46986 * 54.32679 * 9 8 7 11 11 C 1.53038 * 109.49782 * 300.02761 * 8 7 5 12 12 C 1.53049 * 109.53358 * 301.40878 * 11 8 7 13 13 C 1.53187 * 109.31443 * 298.63363 * 12 11 8 14 14 N 1.46933 * 108.77407 * 54.63283 * 13 12 11 15 15 C 1.36934 * 120.62684 * 126.11676 * 14 13 12 16 16 H 1.08003 * 120.00279 * 330.71522 * 15 14 13 17 17 C 1.38816 * 120.00035 * 150.71626 * 15 14 13 18 18 N 1.31615 * 119.99794 * 341.64196 * 17 15 14 19 19 Si 1.86795 * 120.00027 * 161.63857 * 17 15 14 20 20 H 1.48501 * 109.47567 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47226 * 120.00379 * 19 17 15 22 22 H 1.48500 * 109.47363 * 240.00071 * 19 17 15 23 23 C 1.46922 * 118.74063 * 306.39499 * 14 13 12 24 24 C 1.41590 * 119.48486 * 359.43164 * 4 3 2 25 25 C 1.35976 * 119.01611 * 0.27852 * 24 4 3 26 26 C 1.34539 * 119.48050 * 179.70970 * 2 1 3 27 27 O 1.21967 * 119.74901 * 359.97438 * 26 2 1 28 28 H 1.09002 * 109.47011 * 180.28708 * 1 2 3 29 29 H 1.08996 * 109.47270 * 300.28303 * 1 2 3 30 30 H 1.09001 * 109.46986 * 60.29092 * 1 2 3 31 31 H 1.08000 * 119.76860 * 0.02562 * 3 2 1 32 32 H 0.97006 * 120.00215 * 354.97156 * 7 5 4 33 33 H 1.09001 * 109.46720 * 174.32340 * 9 8 7 34 34 H 1.08995 * 109.47440 * 294.32987 * 9 8 7 35 35 H 0.96698 * 114.00161 * 179.97438 * 10 9 8 36 36 H 1.09000 * 109.46246 * 181.39022 * 11 8 7 37 37 H 1.09005 * 109.45145 * 61.41572 * 11 8 7 38 38 H 1.08997 * 109.49301 * 178.68292 * 12 11 8 39 39 H 1.09001 * 109.49362 * 58.58945 * 12 11 8 40 40 H 1.09005 * 109.58759 * 294.85226 * 13 12 11 41 41 H 1.08995 * 109.70579 * 174.49045 * 13 12 11 42 42 H 0.97002 * 119.99989 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.58569 * 173.39236 * 23 14 13 44 44 H 1.09004 * 109.58566 * 293.81914 * 23 14 13 45 45 H 1.08005 * 120.49594 * 180.25436 * 24 4 3 46 46 H 1.07991 * 120.25592 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1718 0.0000 4 6 3.5071 1.1954 -0.0059 5 6 4.2281 2.4816 -0.0124 6 8 3.6068 3.5270 -0.0176 7 7 5.5758 2.4987 -0.0124 8 6 6.2923 3.7711 -0.1300 9 6 5.9132 4.6806 1.0406 10 8 6.1455 3.9938 2.2721 11 6 5.9139 4.4506 -1.4480 12 6 6.2618 3.5274 -2.6180 13 6 7.7711 3.2653 -2.6251 14 7 8.1671 2.7466 -1.3087 15 6 8.8585 1.5694 -1.2019 16 1 8.7246 0.7953 -1.9430 17 6 9.7315 1.3710 -0.1410 18 7 10.1751 2.4011 0.5476 19 14 10.2765 -0.3580 0.3092 20 1 9.6405 -1.3334 -0.6125 21 1 11.7535 -0.4577 0.1924 22 1 9.8691 -0.6576 1.7055 23 6 7.8019 3.5118 -0.1088 24 6 4.2250 -0.0250 0.0002 25 6 3.5345 -1.1964 0.0061 26 6 2.1271 -1.1712 0.0059 27 8 1.5031 -2.2191 0.0117 28 1 -0.3633 -1.0277 0.0051 29 1 -0.3633 0.5182 0.8874 30 1 -0.3633 0.5093 -0.8926 31 1 1.5751 2.0999 0.0004 32 1 6.0714 1.6685 0.0654 33 1 6.5203 5.5854 1.0091 34 1 4.8591 4.9476 0.9668 35 1 5.9269 4.5119 3.0587 36 1 6.4659 5.3853 -1.5463 37 1 4.8438 4.6583 -1.4551 38 1 5.9706 4.0021 -3.5550 39 1 5.7289 2.5830 -2.5071 40 1 8.3026 4.1954 -2.8263 41 1 8.0131 2.5323 -3.3946 42 1 10.7849 2.2625 1.2892 43 1 8.0621 2.9403 0.7822 44 1 8.3359 4.4620 -0.1048 45 1 5.3051 -0.0255 -0.0001 46 1 4.0618 -2.1388 0.0112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325850389.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:54 Heat of formation + Delta-G solvation = -55.346163 kcal Electronic energy + Delta-G solvation = -30786.580336 eV Core-core repulsion = 26677.726612 eV Total energy + Delta-G solvation = -4108.853724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.57384 -39.95332 -37.68938 -36.70925 -35.90685 -34.85338 -33.72729 -32.53967 -30.63886 -30.00109 -29.60895 -27.86341 -25.46769 -25.09780 -24.45805 -23.19167 -22.29689 -21.28994 -20.28780 -18.73119 -18.15097 -17.42256 -16.90270 -16.76259 -16.66043 -16.29164 -15.84897 -15.15658 -14.80856 -14.61928 -14.36758 -14.20980 -14.07987 -13.54832 -13.51636 -13.28003 -13.14320 -13.05746 -12.76779 -12.53935 -12.39277 -12.06926 -11.94090 -11.66511 -11.50868 -11.17510 -11.03073 -10.77766 -10.50184 -10.27764 -10.23851 -10.14781 -10.02844 -9.92023 -9.68776 -9.62036 -9.03495 -8.55932 -8.47934 -8.06229 -6.73961 -5.87340 -3.30961 0.68003 1.34016 2.35541 3.13150 3.32533 3.41918 3.42845 3.62533 3.78805 4.41780 4.42776 4.52197 4.65144 4.80835 4.89410 4.91430 4.97268 5.16892 5.25841 5.32918 5.39003 5.56142 5.65574 5.69781 5.80253 5.84561 5.92693 5.94075 6.07254 6.09611 6.26858 6.30576 6.34283 6.45199 6.47954 6.60633 6.78649 6.79347 6.92865 7.02565 7.24970 7.53466 7.74904 7.79773 8.04362 8.11829 8.37296 8.65504 9.12128 9.75597 10.33976 11.20907 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011044 B = 0.004556 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.733507 B = 6143.751885 C = 7414.902063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 N -0.494 5.494 3 C 0.197 3.803 4 C -0.238 4.238 5 C 0.575 3.425 6 O -0.563 6.563 7 N -0.677 5.677 8 C 0.158 3.842 9 C 0.068 3.932 10 O -0.560 6.560 11 C -0.120 4.120 12 C -0.129 4.129 13 C 0.142 3.858 14 N -0.590 5.590 15 C -0.263 4.263 16 H 0.067 0.933 17 C 0.010 3.990 18 N -0.893 5.893 19 Si 0.895 3.105 20 H -0.276 1.276 21 H -0.290 1.290 22 H -0.287 1.287 23 C 0.175 3.825 24 C 0.008 3.992 25 C -0.247 4.247 26 C 0.515 3.485 27 O -0.552 6.552 28 H 0.105 0.895 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.177 0.823 32 H 0.407 0.593 33 H 0.043 0.957 34 H 0.062 0.938 35 H 0.368 0.632 36 H 0.062 0.938 37 H 0.069 0.931 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.017 0.983 41 H 0.053 0.947 42 H 0.255 0.745 43 H 0.098 0.902 44 H 0.033 0.967 45 H 0.145 0.855 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.403 2.284 -0.018 15.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.202 5.202 3 C 0.065 3.935 4 C -0.247 4.247 5 C 0.362 3.638 6 O -0.445 6.445 7 N -0.326 5.326 8 C 0.070 3.930 9 C -0.011 4.011 10 O -0.364 6.364 11 C -0.158 4.158 12 C -0.168 4.168 13 C 0.016 3.984 14 N -0.312 5.312 15 C -0.392 4.392 16 H 0.084 0.916 17 C -0.190 4.190 18 N -0.536 5.536 19 Si 0.725 3.275 20 H -0.201 1.201 21 H -0.217 1.217 22 H -0.214 1.214 23 C 0.049 3.951 24 C -0.013 4.013 25 C -0.268 4.268 26 C 0.318 3.682 27 O -0.434 6.434 28 H 0.123 0.877 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.194 0.806 32 H 0.244 0.756 33 H 0.061 0.939 34 H 0.080 0.920 35 H 0.213 0.787 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.035 0.965 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.117 0.883 44 H 0.051 0.949 45 H 0.163 0.837 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -15.897 1.817 -0.337 16.004 hybrid contribution 0.584 -0.616 0.709 1.106 sum -15.313 1.201 0.372 15.365 Atomic orbital electron populations 1.22290 0.76858 1.06479 1.03574 1.45135 1.09684 1.06891 1.58502 1.22194 0.93013 0.89740 0.88601 1.19642 0.92370 0.95029 1.17645 1.17532 0.82630 0.87294 0.76353 1.90654 1.67860 1.33071 1.52944 1.45686 1.04757 1.10886 1.71306 1.21247 0.96781 0.82663 0.92305 1.22622 1.00012 0.94114 0.84351 1.86559 1.89953 1.44734 1.15126 1.21728 1.01619 0.98361 0.94096 1.21930 0.99398 0.99092 0.96388 1.20970 0.91388 0.96848 0.89175 1.44031 1.63585 1.24430 0.99164 1.19174 1.18119 0.91361 1.10590 0.91559 1.25074 0.96371 0.96973 1.00615 1.70034 1.33138 1.28238 1.22222 0.86347 0.78268 0.84621 0.78284 1.20110 1.21698 1.21375 1.20978 0.85257 0.96424 0.92456 1.21693 1.01341 0.90975 0.87315 1.21992 0.92087 1.00293 1.12466 1.17304 0.89573 0.82571 0.78758 1.90910 1.69534 1.30011 1.52974 0.87656 0.89947 0.89922 0.80581 0.75586 0.93876 0.91977 0.78739 0.91902 0.91213 0.93123 0.92411 0.96479 0.92813 0.93526 0.88345 0.94948 0.83748 0.82834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.36 10.55 59.85 0.63 1.00 16 2 N -0.49 -5.45 2.95 -126.73 -0.37 -5.83 16 3 C 0.20 2.16 9.92 -16.42 -0.16 2.00 16 4 C -0.24 -3.19 5.88 -104.95 -0.62 -3.80 16 5 C 0.58 9.08 7.17 -12.51 -0.09 8.99 16 6 O -0.56 -9.55 12.64 5.27 0.07 -9.48 16 7 N -0.68 -11.61 3.88 -48.55 -0.19 -11.80 16 8 C 0.16 2.84 0.45 -131.70 -0.06 2.78 16 9 C 0.07 1.13 5.62 37.16 0.21 1.33 16 10 O -0.56 -9.34 13.09 -35.23 -0.46 -9.81 16 11 C -0.12 -2.01 4.47 -26.69 -0.12 -2.13 16 12 C -0.13 -2.18 5.93 -26.61 -0.16 -2.34 16 13 C 0.14 2.81 6.52 -3.71 -0.02 2.79 16 14 N -0.59 -13.46 2.88 -172.32 -0.50 -13.96 16 15 C -0.26 -6.62 9.55 -15.06 -0.14 -6.76 16 16 H 0.07 1.66 7.89 -52.48 -0.41 1.24 16 17 C 0.01 0.25 4.86 -17.43 -0.08 0.17 16 18 N -0.89 -24.59 11.39 55.49 0.63 -23.95 16 19 Si 0.90 20.49 29.59 -169.99 -5.03 15.46 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 23 C 0.18 3.85 3.87 -3.71 -0.01 3.84 16 24 C 0.01 0.11 9.56 -39.12 -0.37 -0.26 16 25 C -0.25 -3.28 9.97 -39.44 -0.39 -3.68 16 26 C 0.51 7.23 7.40 -15.41 -0.11 7.12 16 27 O -0.55 -9.25 16.33 4.95 0.08 -9.17 16 28 H 0.10 0.91 6.83 -51.93 -0.35 0.56 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.18 1.57 7.59 -52.49 -0.40 1.17 16 32 H 0.41 7.31 6.54 -40.82 -0.27 7.05 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.06 1.02 6.20 -51.93 -0.32 0.70 16 35 H 0.37 4.35 9.12 45.56 0.42 4.76 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 1.17 6.38 -51.93 -0.33 0.84 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 1.01 7.53 -51.93 -0.39 0.62 16 40 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 41 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 42 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 43 H 0.10 2.48 6.07 -51.93 -0.32 2.16 16 44 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.14 1.88 6.50 -52.48 -0.34 1.54 16 46 H 0.15 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 367.73 15.07 5.54 5.54 Total: -1.00 -32.20 367.73 -7.39 -39.59 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: -5.65 Total: 12.35 kcal Atomic # 6 Polarization: 12.56 SS G_CDS: -1.51 Total: 11.04 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.43 Total: -55.54 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.31 Total: -28.46 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.20 -7.39 -39.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325850389.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.753 kcal (2) G-P(sol) polarization free energy of solvation -32.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds