Wall clock time and date at job start Tue Mar 31 2020 18:16:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34607 * 119.47774 * 2 1 4 4 C 1.37996 * 120.45706 * 180.28427 * 3 2 1 5 5 C 1.47455 * 120.25309 * 179.70838 * 4 3 2 6 6 O 1.21607 * 120.00331 * 359.72496 * 5 4 3 7 7 N 1.34773 * 119.99881 * 179.72174 * 5 4 3 8 8 C 1.46500 * 120.00537 * 174.97430 * 7 5 4 9 9 C 1.53007 * 109.49455 * 60.08415 * 8 7 5 10 10 O 1.42904 * 109.46986 * 54.32679 * 9 8 7 11 11 C 1.53038 * 109.49782 * 300.02761 * 8 7 5 12 12 C 1.53049 * 109.53358 * 301.40878 * 11 8 7 13 13 C 1.53187 * 109.31443 * 298.63363 * 12 11 8 14 14 N 1.46933 * 108.77407 * 54.63283 * 13 12 11 15 15 C 1.36934 * 120.62684 * 126.11676 * 14 13 12 16 16 H 1.08003 * 120.00279 * 330.71522 * 15 14 13 17 17 C 1.38816 * 120.00035 * 150.71626 * 15 14 13 18 18 N 1.31615 * 119.99794 * 341.64196 * 17 15 14 19 19 Si 1.86795 * 120.00027 * 161.63857 * 17 15 14 20 20 H 1.48501 * 109.47567 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47226 * 120.00379 * 19 17 15 22 22 H 1.48500 * 109.47363 * 240.00071 * 19 17 15 23 23 C 1.46922 * 118.74063 * 306.39499 * 14 13 12 24 24 C 1.41590 * 119.48486 * 359.43164 * 4 3 2 25 25 C 1.35976 * 119.01611 * 0.27852 * 24 4 3 26 26 C 1.34539 * 119.48050 * 179.70970 * 2 1 3 27 27 O 1.21967 * 119.74901 * 359.97438 * 26 2 1 28 28 H 1.09002 * 109.47011 * 180.28708 * 1 2 3 29 29 H 1.08996 * 109.47270 * 300.28303 * 1 2 3 30 30 H 1.09001 * 109.46986 * 60.29092 * 1 2 3 31 31 H 1.08000 * 119.76860 * 0.02562 * 3 2 1 32 32 H 0.97006 * 120.00215 * 354.97156 * 7 5 4 33 33 H 1.09001 * 109.46720 * 174.32340 * 9 8 7 34 34 H 1.08995 * 109.47440 * 294.32987 * 9 8 7 35 35 H 0.96698 * 114.00161 * 179.97438 * 10 9 8 36 36 H 1.09000 * 109.46246 * 181.39022 * 11 8 7 37 37 H 1.09005 * 109.45145 * 61.41572 * 11 8 7 38 38 H 1.08997 * 109.49301 * 178.68292 * 12 11 8 39 39 H 1.09001 * 109.49362 * 58.58945 * 12 11 8 40 40 H 1.09005 * 109.58759 * 294.85226 * 13 12 11 41 41 H 1.08995 * 109.70579 * 174.49045 * 13 12 11 42 42 H 0.97002 * 119.99989 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.58569 * 173.39236 * 23 14 13 44 44 H 1.09004 * 109.58566 * 293.81914 * 23 14 13 45 45 H 1.08005 * 120.49594 * 180.25436 * 24 4 3 46 46 H 1.07991 * 120.25592 * 180.02562 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1274 1.1718 0.0000 4 6 3.5071 1.1954 -0.0059 5 6 4.2281 2.4816 -0.0124 6 8 3.6068 3.5270 -0.0176 7 7 5.5758 2.4987 -0.0124 8 6 6.2923 3.7711 -0.1300 9 6 5.9132 4.6806 1.0406 10 8 6.1455 3.9938 2.2721 11 6 5.9139 4.4506 -1.4480 12 6 6.2618 3.5274 -2.6180 13 6 7.7711 3.2653 -2.6251 14 7 8.1671 2.7466 -1.3087 15 6 8.8585 1.5694 -1.2019 16 1 8.7246 0.7953 -1.9430 17 6 9.7315 1.3710 -0.1410 18 7 10.1751 2.4011 0.5476 19 14 10.2765 -0.3580 0.3092 20 1 9.6405 -1.3334 -0.6125 21 1 11.7535 -0.4577 0.1924 22 1 9.8691 -0.6576 1.7055 23 6 7.8019 3.5118 -0.1088 24 6 4.2250 -0.0250 0.0002 25 6 3.5345 -1.1964 0.0061 26 6 2.1271 -1.1712 0.0059 27 8 1.5031 -2.2191 0.0117 28 1 -0.3633 -1.0277 0.0051 29 1 -0.3633 0.5182 0.8874 30 1 -0.3633 0.5093 -0.8926 31 1 1.5751 2.0999 0.0004 32 1 6.0714 1.6685 0.0654 33 1 6.5203 5.5854 1.0091 34 1 4.8591 4.9476 0.9668 35 1 5.9269 4.5119 3.0587 36 1 6.4659 5.3853 -1.5463 37 1 4.8438 4.6583 -1.4551 38 1 5.9706 4.0021 -3.5550 39 1 5.7289 2.5830 -2.5071 40 1 8.3026 4.1954 -2.8263 41 1 8.0131 2.5323 -3.3946 42 1 10.7849 2.2625 1.2892 43 1 8.0621 2.9403 0.7822 44 1 8.3359 4.4620 -0.1048 45 1 5.3051 -0.0255 -0.0001 46 1 4.0618 -2.1388 0.0112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325850389.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:53 Heat of formation + Delta-G solvation = -78.452648 kcal Electronic energy + Delta-G solvation = -30787.582308 eV Core-core repulsion = 26677.726612 eV Total energy + Delta-G solvation = -4109.855696 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.58610 -41.27912 -39.04398 -37.88247 -37.29030 -35.84338 -35.31514 -34.09066 -32.09564 -31.56496 -30.78929 -28.65796 -27.27769 -26.58149 -25.49504 -24.20142 -23.95014 -22.59961 -21.72479 -20.10553 -19.31074 -18.70107 -18.36476 -18.11621 -17.80219 -17.21658 -17.04412 -16.60846 -16.25319 -16.00771 -15.76012 -15.55261 -15.29316 -15.03078 -14.68786 -14.58317 -14.33728 -14.19735 -14.08765 -13.99755 -13.48629 -13.43384 -13.07553 -13.03021 -12.87275 -12.73672 -12.65570 -12.48960 -12.15983 -11.93914 -11.63987 -11.46058 -11.24770 -11.20605 -11.18669 -11.04563 -10.52010 -10.38218 -9.79571 -9.11281 -8.62444 -7.84217 -5.29268 -0.26842 0.24887 1.46377 1.48248 1.53214 1.60793 1.99170 2.38107 2.54000 2.69941 3.30825 3.40243 3.53877 3.63109 3.70682 3.80403 3.82977 4.07540 4.14989 4.22302 4.30879 4.40561 4.41997 4.42165 4.55182 4.66929 4.76326 4.86173 4.87923 4.90337 4.92285 5.00400 5.02184 5.07573 5.16535 5.25646 5.32696 5.37346 5.53740 5.66321 5.76240 5.79124 5.81975 6.43319 6.76045 6.79241 6.99174 7.18232 7.37179 7.88464 8.42506 9.21892 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011044 B = 0.004556 C = 0.003775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2534.733507 B = 6143.751885 C = 7414.902063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.486 5.486 3 C 0.227 3.773 4 C -0.260 4.260 5 C 0.580 3.420 6 O -0.573 6.573 7 N -0.684 5.684 8 C 0.162 3.838 9 C 0.074 3.926 10 O -0.580 6.580 11 C -0.114 4.114 12 C -0.117 4.117 13 C 0.139 3.861 14 N -0.602 5.602 15 C -0.259 4.259 16 H 0.068 0.932 17 C -0.038 4.038 18 N -0.927 5.927 19 Si 0.952 3.048 20 H -0.263 1.263 21 H -0.299 1.299 22 H -0.292 1.292 23 C 0.191 3.809 24 C 0.016 3.984 25 C -0.261 4.261 26 C 0.508 3.492 27 O -0.586 6.586 28 H 0.091 0.909 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.208 0.792 32 H 0.401 0.599 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.388 0.612 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.014 0.986 41 H 0.053 0.947 42 H 0.248 0.752 43 H 0.063 0.937 44 H 0.006 0.994 45 H 0.140 0.860 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.836 2.849 -0.647 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 N -0.192 5.192 3 C 0.094 3.906 4 C -0.268 4.268 5 C 0.369 3.631 6 O -0.456 6.456 7 N -0.332 5.332 8 C 0.074 3.926 9 C -0.005 4.005 10 O -0.387 6.387 11 C -0.152 4.152 12 C -0.156 4.156 13 C 0.014 3.986 14 N -0.325 5.325 15 C -0.390 4.390 16 H 0.085 0.915 17 C -0.234 4.234 18 N -0.572 5.572 19 Si 0.781 3.219 20 H -0.187 1.187 21 H -0.226 1.226 22 H -0.219 1.219 23 C 0.065 3.935 24 C -0.006 4.006 25 C -0.283 4.283 26 C 0.312 3.688 27 O -0.472 6.472 28 H 0.109 0.891 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.225 0.775 32 H 0.237 0.763 33 H 0.068 0.932 34 H 0.087 0.913 35 H 0.236 0.764 36 H 0.086 0.914 37 H 0.096 0.904 38 H 0.096 0.904 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.072 0.928 42 H 0.057 0.943 43 H 0.082 0.918 44 H 0.024 0.976 45 H 0.158 0.842 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -18.380 2.399 -0.979 18.562 hybrid contribution 1.288 -0.729 0.881 1.722 sum -17.093 1.670 -0.099 17.174 Atomic orbital electron populations 1.22632 0.74249 1.06493 1.06412 1.45246 1.11311 1.06062 1.56591 1.22528 0.92293 0.90447 0.85381 1.19459 0.93362 0.93753 1.20276 1.17681 0.81935 0.87985 0.75540 1.90639 1.67788 1.33635 1.53563 1.45654 1.05410 1.10105 1.72072 1.21044 0.93980 0.83642 0.93959 1.22548 1.00341 0.93758 0.83867 1.86516 1.90190 1.45856 1.16131 1.21694 1.02049 0.98332 0.93138 1.21799 0.96721 0.99211 0.97823 1.21095 0.93470 0.96460 0.87596 1.44227 1.63555 1.24128 1.00632 1.19426 1.17254 0.92199 1.10073 0.91458 1.25671 0.97058 0.99651 1.01049 1.70171 1.34305 1.29875 1.22820 0.85441 0.77147 0.81496 0.77780 1.18748 1.22604 1.21881 1.20619 0.87896 0.94185 0.90827 1.21631 1.01167 0.91046 0.86787 1.21999 0.92197 1.00499 1.13575 1.17401 0.89767 0.82991 0.78635 1.90892 1.70163 1.31313 1.54794 0.89073 0.87131 0.87084 0.77542 0.76325 0.93216 0.91299 0.76389 0.91366 0.90379 0.90359 0.92874 0.96820 0.92818 0.94259 0.91846 0.97571 0.84209 0.82688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.55 127.77 1.35 1.82 16 2 N -0.49 -9.43 2.95 -673.09 -1.99 -11.41 16 3 C 0.23 4.24 9.92 84.21 0.84 5.08 16 4 C -0.26 -6.44 5.88 -20.08 -0.12 -6.55 16 5 C 0.58 17.17 7.17 86.67 0.62 17.79 16 6 O -0.57 -17.79 12.64 -4.05 -0.05 -17.84 16 7 N -0.68 -22.88 3.88 -425.76 -1.65 -24.53 16 8 C 0.16 5.71 0.45 3.68 0.00 5.71 16 9 C 0.07 2.36 5.62 71.98 0.40 2.76 16 10 O -0.58 -19.00 13.09 -148.98 -1.95 -20.95 16 11 C -0.11 -3.60 4.47 30.62 0.14 -3.46 16 12 C -0.12 -3.69 5.93 30.67 0.18 -3.51 16 13 C 0.14 5.38 6.52 86.36 0.56 5.95 16 14 N -0.60 -27.70 2.88 -699.09 -2.01 -29.71 16 15 C -0.26 -13.16 9.55 84.03 0.80 -12.36 16 16 H 0.07 3.35 7.89 -2.91 -0.02 3.33 16 17 C -0.04 -1.98 4.86 84.86 0.41 -1.57 16 18 N -0.93 -52.52 11.39 21.65 0.25 -52.27 16 19 Si 0.95 42.87 29.59 68.60 2.03 44.90 16 20 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 C 0.19 8.55 3.87 86.36 0.33 8.88 16 24 C 0.02 0.40 9.56 22.57 0.22 0.61 16 25 C -0.26 -6.82 9.97 22.36 0.22 -6.60 16 26 C 0.51 13.70 7.40 84.90 0.63 14.33 16 27 O -0.59 -19.40 16.33 -5.21 -0.09 -19.49 16 28 H 0.09 1.40 6.83 -2.39 -0.02 1.38 16 29 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.21 2.66 7.59 -2.91 -0.02 2.64 16 32 H 0.40 14.43 6.54 -92.70 -0.61 13.82 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.07 2.12 6.20 -2.39 -0.01 2.11 16 35 H 0.39 8.75 9.12 -74.06 -0.68 8.08 16 36 H 0.07 2.08 8.14 -2.39 -0.02 2.07 16 37 H 0.08 2.40 6.38 -2.38 -0.02 2.38 16 38 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.05 1.75 7.53 -2.39 -0.02 1.73 16 40 H 0.01 0.54 8.14 -2.38 -0.02 0.53 16 41 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 42 H 0.25 13.82 8.31 -92.71 -0.77 13.05 16 43 H 0.06 3.30 6.07 -2.38 -0.01 3.29 16 44 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 45 H 0.14 3.66 6.50 -2.91 -0.02 3.64 16 46 H 0.16 3.86 8.06 -2.92 -0.02 3.84 16 Total: -1.00 -70.26 367.73 0.88 -69.38 By element: Atomic # 1 Polarization: 33.29 SS G_CDS: -0.25 Total: 33.04 kcal Atomic # 6 Polarization: 22.30 SS G_CDS: 6.59 Total: 28.89 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -5.40 Total: -117.92 kcal Atomic # 8 Polarization: -56.20 SS G_CDS: -2.09 Total: -58.28 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -70.26 0.88 -69.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325850389.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.071 kcal (2) G-P(sol) polarization free energy of solvation -70.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds