Wall clock time and date at job start Tue Mar 31 2020 18:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35497 * 117.00435 * 2 1 4 4 C 1.39169 * 119.52608 * 179.97438 * 3 2 1 5 5 C 1.37949 * 119.26126 * 179.97438 * 4 3 2 6 6 C 1.40286 * 118.35788 * 0.02562 * 5 4 3 7 7 C 1.47623 * 120.49833 * 180.02562 * 6 5 4 8 8 O 1.21581 * 119.99575 * 221.10432 * 7 6 5 9 9 N 1.34774 * 119.99871 * 41.09927 * 7 6 5 10 10 C 1.46928 * 120.63084 * 5.54045 * 9 7 6 11 11 C 1.53626 * 108.54061 * 126.36946 * 10 9 7 12 12 C 1.53046 * 109.24183 * 54.85872 * 11 10 9 13 13 C 1.53042 * 109.53563 * 298.51149 * 12 11 10 14 14 C 1.52997 * 109.49692 * 181.31607 * 13 12 11 15 15 O 1.42901 * 109.47266 * 180.15991 * 14 13 12 16 16 N 1.46507 * 109.52362 * 301.39712 * 13 12 11 17 17 C 1.36939 * 120.00042 * 179.85542 * 16 13 12 18 18 H 1.08008 * 119.99814 * 0.02562 * 17 16 13 19 19 C 1.38808 * 120.00198 * 179.97438 * 17 16 13 20 20 N 1.31622 * 119.99879 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00162 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46920 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47163 * 120.00181 * 21 19 17 24 24 H 1.48502 * 109.46748 * 239.99843 * 21 19 17 25 25 C 1.46930 * 120.62865 * 185.82461 * 9 7 6 26 26 C 1.39526 * 119.00511 * 0.02562 * 6 5 4 27 27 N 1.31657 * 120.62557 * 359.97438 * 26 6 5 28 28 H 1.08992 * 109.47552 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47136 * 300.00183 * 1 2 3 30 30 H 1.09008 * 109.46698 * 59.99674 * 1 2 3 31 31 H 1.07994 * 120.37034 * 359.72520 * 4 3 2 32 32 H 1.07998 * 120.82046 * 179.97438 * 5 4 3 33 33 H 1.08995 * 109.58600 * 246.20386 * 10 9 7 34 34 H 1.09000 * 109.58885 * 6.63084 * 10 9 7 35 35 H 1.08997 * 109.63490 * 294.86935 * 11 10 9 36 36 H 1.09001 * 109.45654 * 174.74054 * 11 10 9 37 37 H 1.09000 * 109.46313 * 178.49476 * 12 11 10 38 38 H 1.08997 * 109.44870 * 58.51834 * 12 11 10 39 39 H 1.08993 * 109.47481 * 300.15897 * 14 13 12 40 40 H 1.09004 * 109.47012 * 60.16310 * 14 13 12 41 41 H 0.96705 * 114.00305 * 180.02562 * 15 14 13 42 42 H 0.96994 * 119.99823 * 359.85447 * 16 13 12 43 43 H 0.96996 * 119.99942 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.58449 * 353.37104 * 25 9 7 45 45 H 1.09002 * 109.58365 * 113.79949 * 25 9 7 46 46 H 1.07997 * 119.68409 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0443 1.2072 0.0000 4 6 3.4346 1.2685 0.0005 5 6 4.0553 2.5004 0.0000 6 6 3.2526 3.6510 -0.0005 7 6 3.8671 4.9932 -0.0017 8 8 3.3989 5.8766 0.6901 9 7 4.9471 5.2392 -0.7695 10 6 5.4512 4.2207 -1.7007 11 6 5.5517 4.8456 -3.1006 12 6 6.4104 6.1103 -3.0279 13 6 5.7480 7.1257 -2.0939 14 6 6.5902 8.4022 -2.0475 15 8 5.9731 9.3485 -1.1724 16 7 4.4059 7.4431 -2.5885 17 6 3.6181 8.3329 -1.9082 18 1 3.9863 8.8010 -1.0072 19 6 2.3468 8.6340 -2.3771 20 7 1.8984 8.0638 -3.4754 21 14 1.2725 9.8483 -1.4495 22 1 2.0033 10.3444 -0.2558 23 1 0.9381 10.9915 -2.3364 24 1 0.0216 9.1738 -1.0186 25 6 5.6463 6.5288 -0.6867 26 6 1.8647 3.5076 0.0001 27 7 1.3140 2.3118 0.0006 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 4.0211 0.3617 0.0054 32 1 5.1325 2.5773 0.0008 33 1 6.4359 3.8843 -1.3762 34 1 4.7636 3.3753 -1.7250 35 1 4.5551 5.1027 -3.4593 36 1 6.0118 4.1323 -3.7844 37 1 6.5063 6.5420 -4.0241 38 1 7.3990 5.8563 -2.6454 39 1 7.5888 8.1654 -1.6805 40 1 6.6622 8.8266 -3.0489 41 1 6.4538 10.1840 -1.0946 42 1 4.0755 7.0229 -3.3979 43 1 1.0101 8.2745 -3.8033 44 1 5.0874 7.2068 -0.0417 45 1 6.6466 6.3767 -0.2812 46 1 1.2363 4.3859 -0.0008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327575876.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:59:51 Heat of formation + Delta-G solvation = -79.492767 kcal Electronic energy + Delta-G solvation = -30635.345322 eV Core-core repulsion = 26525.444523 eV Total energy + Delta-G solvation = -4109.900799 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.03902 -40.97292 -39.40931 -38.51951 -37.14482 -35.61123 -34.25293 -33.42078 -32.51471 -31.96955 -30.35061 -28.41632 -27.08110 -26.55618 -25.55502 -24.67105 -24.25614 -22.88673 -21.19159 -19.88931 -19.45886 -19.21885 -18.42636 -17.92657 -17.75909 -17.23240 -17.00343 -16.70293 -16.06219 -15.79523 -15.72893 -15.59428 -15.28735 -15.02566 -14.81926 -14.62492 -14.43744 -14.33698 -14.13481 -13.75000 -13.56490 -13.46347 -13.18623 -12.93532 -12.80189 -12.67699 -12.56154 -12.22416 -12.03602 -11.94619 -11.77482 -11.38456 -11.27794 -11.14696 -10.92089 -10.84672 -10.57912 -10.53207 -9.69500 -9.44384 -8.77951 -7.80464 -5.00739 -0.24366 0.09855 1.38609 1.43190 1.51576 1.74402 2.01003 2.18427 2.64668 2.68936 3.14822 3.41196 3.54102 3.70248 3.76409 3.91103 3.97390 4.00093 4.01648 4.17336 4.23122 4.36068 4.39576 4.43050 4.56610 4.61935 4.63894 4.66852 4.70305 4.77167 4.80056 4.86391 4.95097 4.99275 5.06030 5.08403 5.21689 5.25696 5.49412 5.54789 5.75605 5.93683 6.07119 6.45325 6.53267 6.66788 7.18795 7.29952 7.53814 8.24047 8.45172 9.44357 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012131 B = 0.004338 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.540994 B = 6452.938260 C = 7784.804889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.306 6.306 3 C 0.319 3.681 4 C -0.178 4.178 5 C 0.001 3.999 6 C -0.219 4.219 7 C 0.558 3.442 8 O -0.583 6.583 9 N -0.585 5.585 10 C 0.097 3.903 11 C -0.130 4.130 12 C -0.109 4.109 13 C 0.173 3.827 14 C 0.075 3.925 15 O -0.575 6.575 16 N -0.711 5.711 17 C -0.159 4.159 18 H 0.082 0.918 19 C -0.091 4.091 20 N -0.979 5.979 21 Si 0.943 3.057 22 H -0.278 1.278 23 H -0.296 1.296 24 H -0.311 1.311 25 C 0.116 3.884 26 C 0.176 3.824 27 N -0.558 5.558 28 H 0.131 0.869 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.188 0.812 32 H 0.187 0.813 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.032 0.968 36 H 0.108 0.892 37 H 0.064 0.936 38 H 0.107 0.893 39 H 0.070 0.930 40 H 0.034 0.966 41 H 0.375 0.625 42 H 0.370 0.630 43 H 0.238 0.762 44 H 0.052 0.948 45 H 0.087 0.913 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.534 -18.164 3.586 22.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.213 6.213 3 C 0.139 3.861 4 C -0.198 4.198 5 C -0.024 4.024 6 C -0.225 4.225 7 C 0.347 3.653 8 O -0.464 6.464 9 N -0.315 5.315 10 C -0.024 4.024 11 C -0.168 4.168 12 C -0.146 4.146 13 C 0.082 3.918 14 C -0.005 4.005 15 O -0.380 6.380 16 N -0.350 5.350 17 C -0.292 4.292 18 H 0.099 0.901 19 C -0.280 4.280 20 N -0.635 5.635 21 Si 0.777 3.223 22 H -0.203 1.203 23 H -0.224 1.224 24 H -0.240 1.240 25 C -0.009 4.009 26 C 0.020 3.980 27 N -0.282 5.282 28 H 0.149 0.851 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.205 0.795 32 H 0.204 0.796 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.051 0.949 36 H 0.127 0.873 37 H 0.083 0.917 38 H 0.126 0.874 39 H 0.088 0.912 40 H 0.052 0.948 41 H 0.223 0.777 42 H 0.202 0.798 43 H 0.047 0.953 44 H 0.070 0.930 45 H 0.105 0.895 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.027 -18.420 4.146 22.386 hybrid contribution -0.894 2.048 -0.056 2.235 sum 11.133 -16.372 4.090 20.217 Atomic orbital electron populations 1.23095 0.75915 1.04952 1.02080 1.86194 1.24256 1.23685 1.87127 1.20538 0.90724 0.84610 0.90180 1.21372 0.90944 1.00497 1.06963 1.21946 1.01885 0.88828 0.89699 1.20706 0.95429 0.94639 1.11730 1.18338 0.79894 0.87146 0.79960 1.90776 1.62598 1.47743 1.45266 1.47792 1.28316 1.16325 1.39111 1.22433 1.01433 0.90175 0.88358 1.21931 0.99872 0.97750 0.97254 1.21643 0.99629 0.94265 0.99089 1.20471 0.85628 0.92690 0.92988 1.22736 0.95118 0.90133 0.92519 1.86798 1.54236 1.29112 1.67904 1.42579 1.12811 1.50404 1.29195 1.19662 0.93631 1.12093 1.03806 0.90065 1.25151 0.99483 1.03885 0.99519 1.69773 1.18155 1.50076 1.25478 0.85442 0.79176 0.79480 0.78199 1.20336 1.22394 1.23964 1.21983 0.95825 0.84065 0.99022 1.22246 0.92189 0.93449 0.90139 1.67298 1.41306 0.98730 1.20841 0.85107 0.92799 0.92999 0.79453 0.79623 0.86668 0.89151 0.94897 0.87349 0.91690 0.87416 0.91174 0.94796 0.77723 0.79759 0.95283 0.92953 0.89467 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.37 113.37 1.18 1.80 16 2 O -0.31 -6.76 10.46 -87.98 -0.92 -7.68 16 3 C 0.32 8.12 7.49 84.83 0.64 8.75 16 4 C -0.18 -3.36 10.02 22.43 0.22 -3.13 16 5 C 0.00 0.03 7.50 22.70 0.17 0.20 16 6 C -0.22 -7.05 5.10 -19.99 -0.10 -7.15 16 7 C 0.56 22.20 7.32 86.72 0.64 22.83 16 8 O -0.58 -29.84 16.37 -3.97 -0.07 -29.90 16 9 N -0.59 -19.25 2.88 -821.71 -2.37 -21.62 16 10 C 0.10 2.11 4.98 86.51 0.43 2.54 16 11 C -0.13 -3.15 5.93 30.82 0.18 -2.97 16 12 C -0.11 -2.68 4.76 30.62 0.15 -2.54 16 13 C 0.17 6.08 0.68 3.68 0.00 6.08 16 14 C 0.07 2.36 6.08 71.98 0.44 2.80 16 15 O -0.57 -21.32 10.11 -148.98 -1.51 -22.82 16 16 N -0.71 -34.72 4.75 -302.98 -1.44 -36.15 16 17 C -0.16 -9.19 8.21 84.03 0.69 -8.50 16 18 H 0.08 4.87 5.28 -2.91 -0.02 4.86 16 19 C -0.09 -5.65 5.50 84.86 0.47 -5.19 16 20 N -0.98 -63.54 13.06 21.65 0.28 -63.25 16 21 Si 0.94 52.55 29.55 68.60 2.03 54.58 16 22 H -0.28 -15.15 7.11 99.48 0.71 -14.45 16 23 H -0.30 -16.12 7.11 99.48 0.71 -15.41 16 24 H -0.31 -17.80 7.11 99.48 0.71 -17.09 16 25 C 0.12 4.08 4.86 86.36 0.42 4.50 16 26 C 0.18 6.31 10.81 85.03 0.92 7.23 16 27 N -0.56 -17.72 9.18 -307.82 -2.82 -20.54 16 28 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.05 8.10 -2.39 -0.02 1.03 16 30 H 0.05 1.05 8.10 -2.38 -0.02 1.03 16 31 H 0.19 1.99 8.06 -2.91 -0.02 1.97 16 32 H 0.19 2.36 6.74 -2.91 -0.02 2.34 16 33 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.09 1.84 4.77 -2.39 -0.01 1.83 16 35 H 0.03 1.13 6.75 -2.39 -0.02 1.12 16 36 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.03 1.10 8.14 -2.38 -0.02 1.08 16 41 H 0.38 10.00 9.12 -74.05 -0.68 9.33 16 42 H 0.37 19.69 6.43 -92.71 -0.60 19.09 16 43 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 44 H 0.05 2.45 5.69 -2.39 -0.01 2.44 16 45 H 0.09 2.36 8.14 -2.39 -0.02 2.35 16 46 H 0.14 5.65 8.06 -2.91 -0.02 5.63 16 Total: -1.00 -88.31 367.83 -0.62 -88.93 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.24 Total: 31.21 kcal Atomic # 6 Polarization: 20.83 SS G_CDS: 6.43 Total: 27.26 kcal Atomic # 7 Polarization: -135.22 SS G_CDS: -6.35 Total: -141.57 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -2.49 Total: -60.41 kcal Atomic # 14 Polarization: 52.55 SS G_CDS: 2.03 Total: 54.58 kcal Total: -88.31 -0.62 -88.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327575876.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.438 kcal (2) G-P(sol) polarization free energy of solvation -88.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds