Wall clock time and date at job start Tue Mar 31 2020 18:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35695 * 119.43992 * 2 1 4 4 C 1.35271 * 121.00196 * 179.73075 * 3 2 1 5 5 C 1.41154 * 119.86431 * 0.50443 * 4 3 2 6 6 C 1.48453 * 120.53765 * 179.75510 * 5 4 3 7 7 O 1.21469 * 120.00078 * 179.44947 * 6 5 4 8 8 N 1.34780 * 119.99971 * 359.72632 * 6 5 4 9 9 C 1.46500 * 120.00149 * 174.60994 * 8 6 5 10 10 C 1.53004 * 109.54331 * 303.99387 * 9 8 6 11 11 N 1.46499 * 109.46568 * 305.58425 * 10 9 8 12 12 C 1.36946 * 119.99938 * 175.02891 * 11 10 9 13 13 H 1.07997 * 119.99667 * 0.02562 * 12 11 10 14 14 C 1.38804 * 120.00148 * 179.97438 * 12 11 10 15 15 N 1.31621 * 120.00226 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00323 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47068 * 89.99764 * 16 14 12 18 18 H 1.48494 * 109.47265 * 210.00184 * 16 14 12 19 19 H 1.48501 * 109.46900 * 329.99962 * 16 14 12 20 20 C 1.53172 * 109.54575 * 183.81362 * 9 8 6 21 21 C 1.53277 * 109.06583 * 297.02937 * 20 9 8 22 22 O 1.42905 * 109.46260 * 302.44700 * 21 20 9 23 23 C 1.42901 * 114.09567 * 61.15288 * 22 21 20 24 24 C 1.53096 * 109.41876 * 298.84405 * 23 22 21 25 25 C 1.38301 * 118.92104 * 359.48584 * 5 4 3 26 26 C 1.34595 * 119.43975 * 179.97438 * 2 1 3 27 27 O 1.22011 * 119.96516 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.47296 * 270.02370 * 1 2 3 29 29 H 1.09001 * 109.47262 * 30.02229 * 1 2 3 30 30 H 1.08997 * 109.47071 * 150.02117 * 1 2 3 31 31 H 1.08002 * 119.49992 * 0.02562 * 3 2 1 32 32 H 1.07991 * 120.06905 * 180.28361 * 4 3 2 33 33 H 0.97002 * 119.99816 * 354.61084 * 8 6 5 34 34 H 1.08997 * 109.47289 * 65.58230 * 10 9 8 35 35 H 1.08994 * 109.47398 * 185.58857 * 10 9 8 36 36 H 0.97000 * 120.00370 * 355.02669 * 11 10 9 37 37 H 0.96998 * 120.00599 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.52479 * 57.01875 * 20 9 8 39 39 H 1.09000 * 109.52711 * 177.20595 * 20 9 8 40 40 H 1.08997 * 109.46408 * 182.44631 * 21 20 9 41 41 H 1.09006 * 109.46981 * 62.44457 * 21 20 9 42 42 H 1.09005 * 109.48134 * 178.86463 * 23 22 21 43 43 H 1.09000 * 109.49188 * 58.83949 * 23 22 21 44 44 H 1.09003 * 109.51787 * 297.70712 * 24 23 22 45 45 H 1.08998 * 109.57504 * 177.54811 * 24 23 22 46 46 H 1.08000 * 120.48628 * 180.25399 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1817 0.0000 4 6 3.4842 1.2186 0.0054 5 6 4.2202 0.0142 0.0005 6 6 5.7045 0.0372 0.0009 7 8 6.3282 -1.0052 0.0067 8 7 6.3602 1.2148 0.0004 9 6 7.8201 1.2404 0.1200 10 6 8.2427 0.4994 1.3902 11 7 7.5420 1.0691 2.5437 12 6 7.6836 0.4991 3.7809 13 1 8.3121 -0.3702 3.9061 14 6 7.0201 1.0391 4.8739 15 7 7.1558 0.4910 6.0629 16 14 5.9347 2.5440 4.6578 17 1 4.5487 2.1135 4.3435 18 1 5.9339 3.3381 5.9125 19 1 6.4587 3.3765 3.5453 20 6 8.3032 2.6923 0.1890 21 6 7.9436 3.4024 -1.1208 22 8 8.5316 2.7022 -2.2191 23 6 8.0808 1.3535 -2.3596 24 6 8.4463 0.5610 -1.1017 25 6 3.5360 -1.1878 0.0009 26 6 2.1266 -1.1722 0.0005 27 8 1.5056 -2.2224 0.0015 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.5747 2.1069 0.0004 32 1 3.9996 2.1676 0.0100 33 1 5.8654 2.0453 -0.0790 34 1 7.9891 -0.5565 1.2963 35 1 9.3185 0.6036 1.5308 36 1 6.9778 1.8501 2.4313 37 1 6.6925 0.8686 6.8268 38 1 7.8194 3.1979 1.0247 39 1 9.3842 2.7103 0.3278 40 1 8.3228 4.4240 -1.0961 41 1 6.8601 3.4197 -1.2391 42 1 8.5591 0.8989 -3.2273 43 1 6.9992 1.3436 -2.4941 44 1 9.5302 0.5361 -0.9891 45 1 8.0655 -0.4567 -1.1878 46 1 4.0738 -2.1244 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327646349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:35 Heat of formation + Delta-G solvation = -52.661085 kcal Electronic energy + Delta-G solvation = -30548.954281 eV Core-core repulsion = 26440.216991 eV Total energy + Delta-G solvation = -4108.737290 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.54204 -40.61287 -38.57523 -37.03509 -36.02399 -34.65347 -33.82128 -31.84325 -31.21860 -30.80988 -30.09905 -28.11010 -26.92457 -24.66357 -23.81091 -23.56933 -23.27654 -21.39874 -20.98149 -19.33190 -18.34489 -17.81725 -17.44818 -17.16753 -16.27434 -16.18786 -16.06734 -15.77736 -15.49380 -14.94424 -14.63513 -14.44901 -14.35994 -14.31319 -13.72210 -13.47526 -13.30370 -13.22035 -12.89367 -12.82493 -12.59148 -12.54176 -12.10806 -12.04446 -11.90139 -11.78396 -11.34822 -11.18682 -10.95926 -10.73065 -10.47332 -10.34407 -10.23075 -10.16696 -9.74671 -9.60115 -9.51124 -8.88037 -8.80774 -8.17679 -7.20834 -5.75888 -3.10477 0.35703 1.48809 2.39537 2.86748 3.09901 3.26003 3.30634 3.38444 3.68087 3.81127 4.24277 4.38094 4.47539 4.55725 4.66655 4.81386 4.84457 4.87251 4.90577 4.95351 4.98268 5.07906 5.14115 5.29137 5.29970 5.51963 5.55852 5.58736 5.60827 5.66545 5.79430 5.85333 5.87944 6.00649 6.02265 6.13086 6.18773 6.24788 6.36377 6.71130 6.79760 6.86553 7.11520 7.55990 7.79657 8.01033 8.28937 8.42592 9.21386 9.92918 10.12986 11.43023 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007973 B = 0.005515 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3511.089256 B = 5076.232633 C = 7152.242885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.497 5.497 3 C 0.128 3.872 4 C -0.212 4.212 5 C -0.030 4.030 6 C 0.563 3.437 7 O -0.508 6.508 8 N -0.710 5.710 9 C 0.170 3.830 10 C 0.146 3.854 11 N -0.748 5.748 12 C -0.235 4.235 13 H 0.090 0.910 14 C 0.003 3.997 15 N -0.934 5.934 16 Si 0.882 3.118 17 H -0.286 1.286 18 H -0.291 1.291 19 H -0.280 1.280 20 C -0.157 4.157 21 C 0.061 3.939 22 O -0.383 6.383 23 C 0.065 3.935 24 C -0.163 4.163 25 C -0.167 4.167 26 C 0.513 3.487 27 O -0.544 6.544 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.167 0.833 32 H 0.145 0.855 33 H 0.394 0.606 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.357 0.643 37 H 0.258 0.742 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.045 0.955 42 H 0.092 0.908 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.096 0.904 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.961 8.386 -19.065 22.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.209 5.209 3 C 0.002 3.998 4 C -0.235 4.235 5 C -0.036 4.036 6 C 0.349 3.651 7 O -0.383 6.383 8 N -0.363 5.363 9 C 0.085 3.915 10 C 0.019 3.981 11 N -0.394 5.394 12 C -0.365 4.365 13 H 0.108 0.892 14 C -0.193 4.193 15 N -0.583 5.583 16 Si 0.713 3.287 17 H -0.213 1.213 18 H -0.218 1.218 19 H -0.206 1.206 20 C -0.195 4.195 21 C -0.016 4.016 22 O -0.302 6.302 23 C -0.011 4.011 24 C -0.202 4.202 25 C -0.190 4.190 26 C 0.315 3.685 27 O -0.426 6.426 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.184 0.816 32 H 0.163 0.837 33 H 0.229 0.771 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.190 0.810 37 H 0.068 0.932 38 H 0.103 0.897 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.063 0.937 42 H 0.110 0.890 43 H 0.066 0.934 44 H 0.100 0.900 45 H 0.115 0.885 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -8.717 6.870 -18.975 21.983 hybrid contribution -1.262 1.603 0.481 2.096 sum -9.979 8.474 -18.494 22.658 Atomic orbital electron populations 1.22185 0.77068 1.04935 1.04138 1.45361 1.09432 1.06794 1.59321 1.21770 0.93502 0.89409 0.95127 1.20628 0.92660 0.98470 1.11746 1.20548 0.94046 0.93827 0.95201 1.18072 0.86336 0.84054 0.76622 1.90729 1.67929 1.32163 1.47512 1.45893 1.07588 1.08076 1.74735 1.20714 0.78531 0.95843 0.96450 1.21071 0.95353 0.97614 0.84111 1.42549 1.57341 1.34448 1.05070 1.19058 1.24080 1.10031 0.83341 0.89241 1.24647 1.00343 0.98898 0.95383 1.69692 1.47280 1.42355 0.98935 0.86578 0.81303 0.84061 0.76755 1.21260 1.21790 1.20612 1.22513 1.03898 0.94644 0.98471 1.22625 0.97014 0.96052 0.85907 1.87916 1.68082 1.25030 1.49177 1.22535 0.98748 0.82116 0.97744 1.22559 1.01978 1.01640 0.94042 1.22737 0.92078 0.99867 1.04327 1.17096 0.88940 0.82842 0.79671 1.90959 1.69360 1.29699 1.52603 0.90403 0.89599 0.88698 0.81610 0.83718 0.77072 0.92382 0.95076 0.81035 0.93151 0.89712 0.88913 0.88677 0.93678 0.89027 0.93430 0.89988 0.88536 0.81807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.41 10.34 59.85 0.62 1.03 16 2 N -0.50 -5.26 2.98 -127.13 -0.38 -5.64 16 3 C 0.13 1.06 10.25 -16.90 -0.17 0.88 16 4 C -0.21 -2.13 9.50 -39.53 -0.38 -2.50 16 5 C -0.03 -0.41 5.91 -104.56 -0.62 -1.03 16 6 C 0.56 8.86 7.21 -12.05 -0.09 8.78 16 7 O -0.51 -9.62 12.70 5.39 0.07 -9.55 16 8 N -0.71 -9.56 3.70 -48.18 -0.18 -9.73 16 9 C 0.17 2.46 0.32 -131.64 -0.04 2.42 16 10 C 0.15 2.85 4.80 -4.04 -0.02 2.84 16 11 N -0.75 -17.27 5.02 -59.91 -0.30 -17.57 16 12 C -0.24 -6.69 10.47 -15.06 -0.16 -6.85 16 13 H 0.09 2.79 8.06 -52.49 -0.42 2.36 16 14 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 15 N -0.93 -29.61 13.97 55.49 0.78 -28.84 16 16 Si 0.88 21.54 27.73 -169.99 -4.71 16.83 16 17 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 18 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 19 H -0.28 -6.16 6.52 56.52 0.37 -5.79 16 20 C -0.16 -1.97 4.84 -26.50 -0.13 -2.10 16 21 C 0.06 0.62 6.67 37.30 0.25 0.87 16 22 O -0.38 -4.55 10.77 -35.23 -0.38 -4.93 16 23 C 0.07 0.73 6.68 37.21 0.25 0.97 16 24 C -0.16 -2.13 4.81 -26.59 -0.13 -2.25 16 25 C -0.17 -2.55 9.61 -38.53 -0.37 -2.92 16 26 C 0.51 7.60 7.42 -15.31 -0.11 7.49 16 27 O -0.54 -9.70 16.62 4.91 0.08 -9.62 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.30 8.00 -51.93 -0.42 -0.12 16 30 H 0.09 0.78 7.37 -51.93 -0.38 0.40 16 31 H 0.17 0.61 8.02 -52.49 -0.42 0.19 16 32 H 0.15 1.06 6.51 -52.49 -0.34 0.71 16 33 H 0.39 4.17 5.53 -40.82 -0.23 3.94 16 34 H 0.06 1.29 6.25 -51.93 -0.32 0.96 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.36 7.79 4.37 -40.82 -0.18 7.61 16 37 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 38 H 0.08 1.14 7.22 -51.93 -0.37 0.76 16 39 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.04 0.39 7.02 -51.93 -0.36 0.02 16 42 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.05 0.51 7.75 -51.93 -0.40 0.11 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 45 H 0.10 1.41 6.25 -51.93 -0.32 1.08 16 46 H 0.16 2.66 7.69 -52.49 -0.40 2.26 16 LS Contribution 365.76 15.07 5.51 5.51 Total: -1.00 -37.81 365.76 -6.99 -44.81 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -6.29 Total: 11.12 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -1.19 Total: 7.61 kcal Atomic # 7 Polarization: -61.70 SS G_CDS: -0.08 Total: -61.78 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.23 Total: -24.10 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.83 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.81 -6.99 -44.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327646349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.854 kcal (2) G-P(sol) polarization free energy of solvation -37.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds