Wall clock time and date at job start Tue Mar 31 2020 18:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35695 * 119.43992 * 2 1 4 4 C 1.35271 * 121.00196 * 179.73075 * 3 2 1 5 5 C 1.41154 * 119.86431 * 0.50443 * 4 3 2 6 6 C 1.48453 * 120.53765 * 179.75510 * 5 4 3 7 7 O 1.21469 * 120.00078 * 179.44947 * 6 5 4 8 8 N 1.34780 * 119.99971 * 359.72632 * 6 5 4 9 9 C 1.46500 * 120.00149 * 174.60994 * 8 6 5 10 10 C 1.53004 * 109.54331 * 303.99387 * 9 8 6 11 11 N 1.46499 * 109.46568 * 305.58425 * 10 9 8 12 12 C 1.36946 * 119.99938 * 175.02891 * 11 10 9 13 13 H 1.07997 * 119.99667 * 0.02562 * 12 11 10 14 14 C 1.38804 * 120.00148 * 179.97438 * 12 11 10 15 15 N 1.31621 * 120.00226 * 179.97438 * 14 12 11 16 16 Si 1.86801 * 120.00323 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47068 * 89.99764 * 16 14 12 18 18 H 1.48494 * 109.47265 * 210.00184 * 16 14 12 19 19 H 1.48501 * 109.46900 * 329.99962 * 16 14 12 20 20 C 1.53172 * 109.54575 * 183.81362 * 9 8 6 21 21 C 1.53277 * 109.06583 * 297.02937 * 20 9 8 22 22 O 1.42905 * 109.46260 * 302.44700 * 21 20 9 23 23 C 1.42901 * 114.09567 * 61.15288 * 22 21 20 24 24 C 1.53096 * 109.41876 * 298.84405 * 23 22 21 25 25 C 1.38301 * 118.92104 * 359.48584 * 5 4 3 26 26 C 1.34595 * 119.43975 * 179.97438 * 2 1 3 27 27 O 1.22011 * 119.96516 * 359.97438 * 26 2 1 28 28 H 1.08998 * 109.47296 * 270.02370 * 1 2 3 29 29 H 1.09001 * 109.47262 * 30.02229 * 1 2 3 30 30 H 1.08997 * 109.47071 * 150.02117 * 1 2 3 31 31 H 1.08002 * 119.49992 * 0.02562 * 3 2 1 32 32 H 1.07991 * 120.06905 * 180.28361 * 4 3 2 33 33 H 0.97002 * 119.99816 * 354.61084 * 8 6 5 34 34 H 1.08997 * 109.47289 * 65.58230 * 10 9 8 35 35 H 1.08994 * 109.47398 * 185.58857 * 10 9 8 36 36 H 0.97000 * 120.00370 * 355.02669 * 11 10 9 37 37 H 0.96998 * 120.00599 * 179.97438 * 15 14 12 38 38 H 1.09003 * 109.52479 * 57.01875 * 20 9 8 39 39 H 1.09000 * 109.52711 * 177.20595 * 20 9 8 40 40 H 1.08997 * 109.46408 * 182.44631 * 21 20 9 41 41 H 1.09006 * 109.46981 * 62.44457 * 21 20 9 42 42 H 1.09005 * 109.48134 * 178.86463 * 23 22 21 43 43 H 1.09000 * 109.49188 * 58.83949 * 23 22 21 44 44 H 1.09003 * 109.51787 * 297.70712 * 24 23 22 45 45 H 1.08998 * 109.57504 * 177.54811 * 24 23 22 46 46 H 1.08000 * 120.48628 * 180.25399 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1320 1.1817 0.0000 4 6 3.4842 1.2186 0.0054 5 6 4.2202 0.0142 0.0005 6 6 5.7045 0.0372 0.0009 7 8 6.3282 -1.0052 0.0067 8 7 6.3602 1.2148 0.0004 9 6 7.8201 1.2404 0.1200 10 6 8.2427 0.4994 1.3902 11 7 7.5420 1.0691 2.5437 12 6 7.6836 0.4991 3.7809 13 1 8.3121 -0.3702 3.9061 14 6 7.0201 1.0391 4.8739 15 7 7.1558 0.4910 6.0629 16 14 5.9347 2.5440 4.6578 17 1 4.5487 2.1135 4.3435 18 1 5.9339 3.3381 5.9125 19 1 6.4587 3.3765 3.5453 20 6 8.3032 2.6923 0.1890 21 6 7.9436 3.4024 -1.1208 22 8 8.5316 2.7022 -2.2191 23 6 8.0808 1.3535 -2.3596 24 6 8.4463 0.5610 -1.1017 25 6 3.5360 -1.1878 0.0009 26 6 2.1266 -1.1722 0.0005 27 8 1.5056 -2.2224 0.0015 28 1 -0.3634 0.0004 1.0276 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.5747 2.1069 0.0004 32 1 3.9996 2.1676 0.0100 33 1 5.8654 2.0453 -0.0790 34 1 7.9891 -0.5565 1.2963 35 1 9.3185 0.6036 1.5308 36 1 6.9778 1.8501 2.4313 37 1 6.6925 0.8686 6.8268 38 1 7.8194 3.1979 1.0247 39 1 9.3842 2.7103 0.3278 40 1 8.3228 4.4240 -1.0961 41 1 6.8601 3.4197 -1.2391 42 1 8.5591 0.8989 -3.2273 43 1 6.9992 1.3436 -2.4941 44 1 9.5302 0.5361 -0.9891 45 1 8.0655 -0.4567 -1.1878 46 1 4.0738 -2.1244 0.0013 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327646349.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:17:34 Heat of formation + Delta-G solvation = -82.564696 kcal Electronic energy + Delta-G solvation = -30550.250999 eV Core-core repulsion = 26440.216991 eV Total energy + Delta-G solvation = -4110.034008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.52655 -41.73774 -39.65253 -38.08448 -37.39595 -35.68561 -35.51666 -33.43912 -32.53803 -32.08026 -31.00335 -28.94149 -28.43541 -25.71292 -25.10796 -24.57200 -24.42162 -23.01391 -22.05121 -20.59535 -19.80107 -19.34888 -18.43368 -18.04869 -17.24975 -17.14950 -16.97200 -16.83230 -16.76313 -16.43647 -16.14356 -15.62228 -15.51592 -15.28269 -15.20919 -14.83365 -14.47231 -14.28604 -14.11818 -13.99699 -13.77370 -13.47534 -13.43316 -13.14828 -12.95237 -12.88589 -12.81576 -12.72754 -12.29656 -12.13597 -11.86522 -11.80230 -11.56576 -11.32860 -11.15552 -11.03690 -10.76779 -10.57162 -10.03378 -9.29413 -9.10968 -8.02568 -5.37201 -0.66284 0.60672 1.30375 1.41392 1.48803 1.58658 1.69943 1.96158 2.48791 2.63246 2.98655 3.27134 3.39923 3.45171 3.63718 3.67397 3.72586 3.80130 3.94296 4.04189 4.09407 4.12797 4.28813 4.40144 4.42301 4.44098 4.57022 4.69778 4.73662 4.78395 4.79705 4.82319 4.86457 4.90400 5.04783 5.06958 5.09714 5.14875 5.19093 5.41816 5.49874 5.73494 5.89801 6.18833 6.27889 6.46254 6.78890 7.06759 7.12990 7.78320 8.04704 9.19683 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.007973 B = 0.005515 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3511.089256 B = 5076.232633 C = 7152.242885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.489 5.489 3 C 0.161 3.839 4 C -0.228 4.228 5 C -0.019 4.019 6 C 0.555 3.445 7 O -0.552 6.552 8 N -0.694 5.694 9 C 0.178 3.822 10 C 0.145 3.855 11 N -0.740 5.740 12 C -0.236 4.236 13 H 0.039 0.961 14 C -0.071 4.071 15 N -0.989 5.989 16 Si 0.961 3.039 17 H -0.274 1.274 18 H -0.297 1.297 19 H -0.232 1.232 20 C -0.153 4.153 21 C 0.062 3.938 22 O -0.392 6.392 23 C 0.073 3.927 24 C -0.160 4.160 25 C -0.219 4.219 26 C 0.503 3.497 27 O -0.596 6.596 28 H 0.085 0.915 29 H 0.139 0.861 30 H 0.076 0.924 31 H 0.235 0.765 32 H 0.185 0.815 33 H 0.414 0.586 34 H 0.023 0.977 35 H 0.026 0.974 36 H 0.369 0.631 37 H 0.257 0.743 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.119 0.881 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.471 14.332 -21.322 28.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.198 5.198 3 C 0.034 3.966 4 C -0.250 4.250 5 C -0.026 4.026 6 C 0.341 3.659 7 O -0.430 6.430 8 N -0.348 5.348 9 C 0.092 3.908 10 C 0.018 3.982 11 N -0.386 5.386 12 C -0.367 4.367 13 H 0.057 0.943 14 C -0.262 4.262 15 N -0.640 5.640 16 Si 0.786 3.214 17 H -0.200 1.200 18 H -0.224 1.224 19 H -0.156 1.156 20 C -0.191 4.191 21 C -0.014 4.014 22 O -0.310 6.310 23 C -0.003 4.003 24 C -0.199 4.199 25 C -0.243 4.243 26 C 0.306 3.694 27 O -0.483 6.483 28 H 0.103 0.897 29 H 0.157 0.843 30 H 0.095 0.905 31 H 0.251 0.749 32 H 0.202 0.798 33 H 0.253 0.747 34 H 0.041 0.959 35 H 0.044 0.956 36 H 0.203 0.797 37 H 0.066 0.934 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.137 0.863 41 H 0.089 0.911 42 H 0.123 0.877 43 H 0.075 0.925 44 H 0.099 0.901 45 H 0.092 0.908 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.231 12.883 -21.298 27.308 hybrid contribution -0.402 -0.293 1.227 1.324 sum -11.633 12.590 -20.072 26.395 Atomic orbital electron populations 1.22541 0.74541 1.06702 1.05184 1.45538 1.11149 1.06383 1.56684 1.22847 0.93354 0.90227 0.90186 1.21086 0.93613 0.97976 1.12333 1.20617 0.92929 0.95071 0.93978 1.18543 0.87371 0.84006 0.75943 1.90724 1.69055 1.33953 1.49304 1.45727 1.07162 1.08267 1.73613 1.20543 0.79274 0.97043 0.93975 1.21098 0.94795 0.96566 0.85746 1.42317 1.57722 1.34550 1.04019 1.18937 1.23074 1.08753 0.85907 0.94312 1.25682 1.02526 1.03430 0.94565 1.69934 1.48970 1.44827 1.00227 0.85329 0.78917 0.79139 0.78003 1.19968 1.22413 1.15594 1.22505 1.03548 0.92673 1.00362 1.22799 0.98685 0.96360 0.83589 1.87925 1.68606 1.24879 1.49623 1.22499 0.99419 0.81800 0.96623 1.22500 1.01717 1.00871 0.94801 1.22449 0.92955 0.99567 1.09333 1.16996 0.88633 0.83764 0.79974 1.90911 1.70032 1.31664 1.55706 0.89683 0.84304 0.90534 0.74902 0.79803 0.74739 0.95884 0.95608 0.79655 0.93425 0.89679 0.89465 0.86333 0.91094 0.87687 0.92506 0.90093 0.90765 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.53 10.34 127.77 1.32 1.85 16 2 N -0.49 -8.85 2.98 -674.33 -2.01 -10.86 16 3 C 0.16 1.67 10.25 83.41 0.86 2.52 16 4 C -0.23 -3.47 9.50 22.30 0.21 -3.26 16 5 C -0.02 -0.50 5.91 -19.82 -0.12 -0.62 16 6 C 0.55 17.49 7.21 86.97 0.63 18.12 16 7 O -0.55 -22.50 12.70 -3.62 -0.05 -22.55 16 8 N -0.69 -17.05 3.70 -424.65 -1.57 -18.62 16 9 C 0.18 4.92 0.32 3.72 0.00 4.92 16 10 C 0.15 5.85 4.80 86.38 0.41 6.26 16 11 N -0.74 -34.08 5.02 -343.46 -1.72 -35.81 16 12 C -0.24 -13.92 10.47 84.03 0.88 -13.04 16 13 H 0.04 2.61 8.06 -2.91 -0.02 2.59 16 14 C -0.07 -4.25 5.50 84.86 0.47 -3.78 16 15 N -0.99 -64.94 13.97 21.65 0.30 -64.64 16 16 Si 0.96 43.03 27.73 68.60 1.90 44.93 16 17 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 18 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 19 H -0.23 -8.53 6.52 99.48 0.65 -7.88 16 20 C -0.15 -3.31 4.84 30.74 0.15 -3.16 16 21 C 0.06 0.95 6.67 72.08 0.48 1.43 16 22 O -0.39 -7.73 10.77 -148.98 -1.60 -9.33 16 23 C 0.07 1.44 6.68 72.01 0.48 1.92 16 24 C -0.16 -4.10 4.81 30.69 0.15 -3.95 16 25 C -0.22 -7.19 9.61 22.95 0.22 -6.97 16 26 C 0.50 15.33 7.42 84.93 0.63 15.96 16 27 O -0.60 -22.80 16.62 -5.35 -0.09 -22.89 16 28 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.14 0.02 8.00 -2.39 -0.02 0.00 16 30 H 0.08 1.15 7.37 -2.39 -0.02 1.13 16 31 H 0.23 -0.62 8.02 -2.91 -0.02 -0.65 16 32 H 0.18 1.30 6.51 -2.92 -0.02 1.28 16 33 H 0.41 6.66 5.53 -92.71 -0.51 6.14 16 34 H 0.02 1.10 6.25 -2.39 -0.01 1.09 16 35 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.37 15.06 4.37 -92.71 -0.41 14.66 16 37 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 38 H 0.08 1.87 7.22 -2.39 -0.02 1.85 16 39 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 0.75 7.02 -2.38 -0.02 0.73 16 42 H 0.11 1.80 8.14 -2.38 -0.02 1.78 16 43 H 0.06 1.03 7.75 -2.39 -0.02 1.01 16 44 H 0.08 2.05 8.14 -2.39 -0.02 2.04 16 45 H 0.07 2.27 6.25 -2.39 -0.01 2.26 16 46 H 0.13 4.92 7.69 -2.91 -0.02 4.90 16 Total: -1.00 -94.18 365.76 1.98 -92.20 By element: Atomic # 1 Polarization: 29.32 SS G_CDS: 0.05 Total: 29.37 kcal Atomic # 6 Polarization: 11.43 SS G_CDS: 6.77 Total: 18.20 kcal Atomic # 7 Polarization: -124.92 SS G_CDS: -5.00 Total: -129.92 kcal Atomic # 8 Polarization: -53.04 SS G_CDS: -1.74 Total: -54.77 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 1.90 Total: 44.93 kcal Total: -94.18 1.98 -92.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327646349.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.634 kcal (2) G-P(sol) polarization free energy of solvation -94.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds