Wall clock time and date at job start Tue Mar 31 2020 18:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35674 * 117.00171 * 2 1 4 4 C 1.38915 * 119.68695 * 179.97438 * 3 2 1 5 5 C 1.38373 * 119.11405 * 179.97438 * 4 3 2 6 6 C 1.38825 * 118.48502 * 0.02562 * 5 4 3 7 7 C 1.50707 * 120.35507 * 180.02562 * 6 5 4 8 8 N 1.46493 * 109.47256 * 89.99630 * 7 6 5 9 9 C 1.46495 * 120.00098 * 269.99839 * 8 7 6 10 10 C 1.34781 * 120.00335 * 90.00106 * 8 7 6 11 11 O 1.21352 * 119.99439 * 356.44911 * 10 8 7 12 12 C 1.49449 * 120.00309 * 176.45106 * 10 8 7 13 13 O 1.21343 * 120.00009 * 5.91773 * 12 10 8 14 14 N 1.34773 * 119.99837 * 185.91628 * 12 10 8 15 15 C 1.46509 * 119.99841 * 180.02562 * 14 12 10 16 16 C 1.53004 * 109.47026 * 179.97438 * 15 14 12 17 17 C 1.52995 * 109.46954 * 179.97438 * 16 15 14 18 18 C 1.50692 * 109.47117 * 179.97438 * 17 16 15 19 19 H 1.08000 * 120.00097 * 0.02562 * 18 17 16 20 20 C 1.37880 * 120.00223 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99857 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00307 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46792 * 90.00287 * 22 20 18 24 24 H 1.48496 * 109.47227 * 210.00329 * 22 20 18 25 25 H 1.48502 * 109.47054 * 330.00669 * 22 20 18 26 26 C 1.38048 * 119.29181 * 359.97438 * 6 5 4 27 27 N 1.31965 * 120.83287 * 0.02562 * 26 6 5 28 28 H 1.09001 * 109.46936 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47137 * 300.00822 * 1 2 3 30 30 H 1.08997 * 109.46203 * 60.00396 * 1 2 3 31 31 H 1.08000 * 120.44472 * 0.27443 * 4 3 2 32 32 H 1.08003 * 120.76220 * 180.02562 * 5 4 3 33 33 H 1.09002 * 109.46723 * 209.99629 * 7 6 5 34 34 H 1.08996 * 109.46735 * 329.99079 * 7 6 5 35 35 H 1.08999 * 109.47607 * 95.97333 * 9 8 7 36 36 H 1.08998 * 109.47449 * 215.97554 * 9 8 7 37 37 H 1.09004 * 109.47463 * 335.97409 * 9 8 7 38 38 H 0.97000 * 120.00261 * 359.97438 * 14 12 10 39 39 H 1.08991 * 109.46893 * 299.99915 * 15 14 12 40 40 H 1.09000 * 109.46937 * 59.99978 * 15 14 12 41 41 H 1.09000 * 109.47085 * 299.99701 * 16 15 14 42 42 H 1.09000 * 109.46934 * 59.99506 * 16 15 14 43 43 H 1.09005 * 109.46943 * 300.00278 * 17 16 15 44 44 H 1.09000 * 109.46932 * 60.00148 * 17 16 15 45 45 H 0.96998 * 120.00258 * 180.02562 * 21 20 18 46 46 H 1.07993 * 119.58547 * 180.02562 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0451 1.2088 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5130 0.0000 6 6 3.2506 3.6490 -0.0005 7 6 3.8770 5.0198 -0.0017 8 7 4.0795 5.4629 -1.3832 9 6 5.3347 5.1572 -2.0740 10 6 3.1111 6.1519 -2.0189 11 8 2.0470 6.3495 -1.4700 12 6 3.3478 6.6726 -3.3996 13 8 4.3681 6.3848 -3.9900 14 7 2.4279 7.4617 -3.9890 15 6 2.6596 7.9717 -5.3428 16 6 1.4713 8.8341 -5.7732 17 6 1.7136 9.3672 -7.1867 18 6 0.5430 10.2161 -7.6109 19 1 -0.2902 10.3613 -6.9394 20 6 0.5362 10.8083 -8.8560 21 7 1.5511 10.6320 -9.6736 22 14 -0.9152 11.8601 -9.3822 23 1 -0.6733 13.2708 -8.9866 24 1 -1.0760 11.7799 -10.8563 25 1 -2.1500 11.3656 -8.7219 26 6 1.8771 3.5097 -0.0010 27 7 1.3186 2.3140 -0.0005 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3632 0.5138 -0.8900 31 1 4.0229 0.3695 -0.0035 32 1 5.1255 2.5946 0.0000 33 1 3.2186 5.7205 0.5118 34 1 4.8375 4.9807 0.5119 35 1 5.2097 4.2550 -2.6726 36 1 5.6041 5.9899 -2.7237 37 1 6.1246 4.9994 -1.3395 38 1 1.6120 7.6915 -3.5173 39 1 3.5684 8.5732 -5.3538 40 1 2.7694 7.1348 -6.0325 41 1 0.5627 8.2322 -5.7624 42 1 1.3611 9.6710 -5.0836 43 1 2.6223 9.9692 -7.1972 44 1 1.8241 8.5305 -7.8765 45 1 1.5465 11.0489 -10.5494 46 1 1.2519 4.3902 -0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327777253.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:30:27 Heat of formation + Delta-G solvation = -67.110398 kcal Electronic energy + Delta-G solvation = -27748.722105 eV Core-core repulsion = 23639.358245 eV Total energy + Delta-G solvation = -4109.363859 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.20523 -40.64931 -38.80187 -38.14337 -36.43127 -35.36457 -33.37028 -32.94358 -31.85534 -31.26613 -28.34640 -27.48783 -27.10579 -26.39595 -24.26268 -23.69023 -22.78518 -21.76509 -20.80081 -19.67413 -18.75414 -17.85944 -17.38798 -17.04779 -16.67706 -16.35728 -16.32561 -15.79457 -15.48138 -15.04461 -14.91277 -14.64912 -14.53281 -14.45338 -14.04946 -13.72074 -13.56296 -13.41122 -13.23043 -12.81648 -12.56219 -12.32760 -12.25358 -12.09166 -11.88787 -11.80197 -11.52776 -11.36158 -10.92295 -10.77810 -10.60945 -10.29795 -9.99988 -9.91911 -9.69326 -9.34528 -9.19721 -9.14457 -8.95785 -8.73457 -8.39105 -6.03856 -4.06832 0.72626 0.86239 1.38172 2.28510 2.73323 3.14915 3.30325 3.33710 3.36844 3.40114 3.55751 3.98185 4.30143 4.36501 4.43192 4.48158 4.58765 4.76982 4.90706 4.93231 4.98824 4.99793 5.19726 5.30334 5.32151 5.38543 5.42001 5.53492 5.57188 5.66925 5.72860 5.82949 6.00827 6.05685 6.05837 6.31196 6.52145 6.67460 6.77870 6.85250 6.93568 7.27172 7.50109 7.60229 7.65864 7.71767 7.94377 8.02587 8.35690 8.99627 9.57554 11.07383 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016197 B = 0.001906 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.307184 B =14689.594660 C =15699.620539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.310 6.310 3 C 0.322 3.678 4 C -0.194 4.194 5 C -0.025 4.025 6 C -0.202 4.202 7 C 0.163 3.837 8 N -0.586 5.586 9 C 0.064 3.936 10 C 0.508 3.492 11 O -0.520 6.520 12 C 0.500 3.500 13 O -0.520 6.520 14 N -0.690 5.690 15 C 0.114 3.886 16 C -0.123 4.123 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.167 3.833 27 N -0.540 5.540 28 H 0.096 0.904 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.058 0.942 36 H 0.111 0.889 37 H 0.065 0.935 38 H 0.411 0.589 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.020 0.980 44 H 0.020 0.980 45 H 0.261 0.739 46 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.682 -18.647 24.011 31.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.216 6.216 3 C 0.143 3.857 4 C -0.215 4.215 5 C -0.051 4.051 6 C -0.206 4.206 7 C 0.041 3.959 8 N -0.320 5.320 9 C -0.077 4.077 10 C 0.291 3.709 11 O -0.395 6.395 12 C 0.281 3.719 13 O -0.398 6.398 14 N -0.342 5.342 15 C -0.008 4.008 16 C -0.161 4.161 17 C -0.013 4.013 18 C -0.561 4.561 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 C 0.011 3.989 27 N -0.264 5.264 28 H 0.115 0.885 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.116 0.884 34 H 0.112 0.888 35 H 0.077 0.923 36 H 0.129 0.871 37 H 0.084 0.916 38 H 0.247 0.753 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.038 0.962 44 H 0.038 0.962 45 H 0.071 0.929 46 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 6.095 -19.045 23.674 30.989 hybrid contribution -0.472 0.709 -0.241 0.885 sum 5.623 -18.336 23.433 30.281 Atomic orbital electron populations 1.22886 0.76967 1.03014 1.02697 1.86231 1.23166 1.24604 1.87634 1.19954 0.89515 0.84846 0.91391 1.21040 0.92024 0.99539 1.08896 1.21307 1.00375 0.90721 0.92676 1.21033 0.95213 0.96563 1.07787 1.20327 1.01736 0.91588 0.82270 1.47785 1.17203 1.53149 1.13833 1.22457 0.83461 1.04304 0.97525 1.20381 0.84155 0.79131 0.87220 1.90729 1.24355 1.57344 1.67086 1.19965 0.84485 0.80585 0.86886 1.90658 1.26196 1.58085 1.64871 1.46095 1.21843 1.48041 1.18190 1.21846 1.00713 0.98296 0.79933 1.21929 0.95211 0.97742 1.01201 1.19029 0.97446 0.96133 0.88705 1.21196 1.04363 1.30189 1.00345 0.92572 1.25030 0.96133 0.96643 0.96678 1.69958 1.30463 1.44300 1.08561 0.86570 0.82869 0.80701 0.77718 1.20646 1.21209 1.19862 1.22544 0.92425 0.93714 0.90254 1.67419 1.40824 0.98774 1.19335 0.88548 0.92203 0.92106 0.84027 0.84076 0.88387 0.88767 0.92301 0.87083 0.91608 0.75332 0.91052 0.91120 0.92434 0.92430 0.96198 0.96211 0.92915 0.81699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.30 10.38 101.05 1.05 1.35 16 2 O -0.31 -3.13 10.48 -18.72 -0.20 -3.33 16 3 C 0.32 3.44 7.49 -17.12 -0.13 3.31 16 4 C -0.19 -1.64 10.04 -39.28 -0.39 -2.04 16 5 C -0.02 -0.18 9.85 -39.31 -0.39 -0.57 16 6 C -0.20 -1.72 5.48 -104.47 -0.57 -2.29 16 7 C 0.16 1.20 5.57 -5.19 -0.03 1.17 16 8 N -0.59 -5.69 2.86 -183.47 -0.52 -6.21 16 9 C 0.06 0.54 9.59 59.84 0.57 1.12 16 10 C 0.51 6.40 7.73 -11.58 -0.09 6.31 16 11 O -0.52 -7.14 15.44 5.49 0.08 -7.06 16 12 C 0.50 7.17 7.77 -11.59 -0.09 7.08 16 13 O -0.52 -8.18 13.14 5.50 0.07 -8.10 16 14 N -0.69 -10.05 5.55 -60.73 -0.34 -10.39 16 15 C 0.11 1.91 5.67 -4.03 -0.02 1.89 16 16 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 17 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 18 C -0.52 -14.48 9.11 -34.44 -0.31 -14.79 16 19 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 21 N -0.89 -26.55 13.29 55.43 0.74 -25.82 16 22 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 26 C 0.17 1.75 10.79 -17.56 -0.19 1.56 16 27 N -0.54 -6.24 9.22 -13.33 -0.12 -6.36 16 28 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.14 0.60 8.06 -52.48 -0.42 0.17 16 33 H 0.10 0.75 7.42 -51.93 -0.39 0.36 16 34 H 0.09 0.42 7.81 -51.93 -0.41 0.01 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.11 1.17 5.36 -51.93 -0.28 0.89 16 37 H 0.07 0.35 7.83 -51.93 -0.41 -0.06 16 38 H 0.41 5.49 7.96 -40.82 -0.32 5.16 16 39 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 43 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 46 H 0.17 1.74 7.45 -52.49 -0.39 1.35 16 LS Contribution 393.32 15.07 5.93 5.93 Total: -1.00 -33.05 393.32 -7.15 -40.20 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.80 Total: 1.15 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -0.97 Total: 3.58 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.25 Total: -48.78 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.04 Total: -18.49 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.05 -7.15 -40.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327777253.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.907 kcal (2) G-P(sol) polarization free energy of solvation -33.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds