Wall clock time and date at job start Tue Mar 31 2020 18:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35591 * 118.80426 * 2 1 4 4 C 1.34859 * 121.79655 * 179.97438 * 3 2 1 5 5 C 1.41678 * 119.33980 * 359.75327 * 4 3 2 6 6 O 1.22082 * 121.06991 * 180.25371 * 5 4 3 7 7 C 1.47097 * 117.86234 * 0.50670 * 5 4 3 8 8 C 1.47292 * 120.88022 * 179.77659 * 7 5 4 9 9 O 1.21609 * 120.00123 * 321.89861 * 8 7 5 10 10 N 1.34783 * 119.99576 * 141.90191 * 8 7 5 11 11 C 1.46922 * 120.63188 * 354.75442 * 10 8 7 12 12 C 1.53197 * 108.77155 * 233.58760 * 11 10 8 13 13 C 1.53040 * 109.31707 * 305.36535 * 12 11 10 14 14 O 1.42901 * 109.45880 * 301.35171 * 13 12 11 15 15 C 1.52993 * 109.46410 * 181.38582 * 13 12 11 16 16 N 1.46497 * 109.47337 * 184.99905 * 15 13 12 17 17 C 1.36935 * 119.99945 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00063 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99906 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99961 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00015 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47078 * 60.00393 * 21 19 17 23 23 H 1.48498 * 109.47105 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47103 * 300.00264 * 21 19 17 25 25 C 1.53044 * 109.53657 * 61.36432 * 13 12 11 26 26 C 1.46930 * 120.62380 * 174.73459 * 10 8 7 27 27 C 1.34347 * 118.80313 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47183 * 269.97771 * 1 2 3 29 29 H 1.08998 * 109.47301 * 29.97651 * 1 2 3 30 30 H 1.09000 * 109.47508 * 149.98315 * 1 2 3 31 31 H 1.07994 * 119.09815 * 359.97438 * 3 2 1 32 32 H 1.07999 * 120.32829 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.58393 * 113.80451 * 11 10 8 34 34 H 1.08997 * 109.59179 * 353.37396 * 11 10 8 35 35 H 1.08997 * 109.49780 * 65.32193 * 12 11 10 36 36 H 1.09007 * 109.49408 * 185.41735 * 12 11 10 37 37 H 0.96697 * 114.00049 * 179.97438 * 14 13 12 38 38 H 1.08999 * 109.47330 * 305.00641 * 15 13 12 39 39 H 1.09004 * 109.47132 * 65.00318 * 15 13 12 40 40 H 0.97004 * 119.99929 * 0.02562 * 16 15 13 41 41 H 0.96995 * 120.00320 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.49766 * 178.68689 * 25 13 12 43 43 H 1.09001 * 109.49680 * 58.58911 * 25 13 12 44 44 H 1.08996 * 109.58556 * 246.19586 * 26 10 8 45 45 H 1.08998 * 109.58815 * 6.62633 * 26 10 8 46 46 H 1.08003 * 119.81332 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1183 1.1881 0.0000 4 6 3.4651 1.2585 0.0005 5 6 4.2228 0.0614 0.0064 6 8 5.4433 0.0883 0.0116 7 6 3.4917 -1.2150 0.0002 8 6 4.2129 -2.4993 0.0008 9 8 5.2362 -2.6223 -0.6445 10 7 3.7384 -3.5381 0.7166 11 6 2.5692 -3.3731 1.5908 12 6 2.9334 -3.8570 2.9979 13 6 3.4618 -5.2911 2.9191 14 8 2.4651 -6.1344 2.3383 15 6 3.7943 -5.7900 4.3267 16 7 4.4108 -7.1162 4.2419 17 6 4.7962 -7.7664 5.3837 18 1 4.6453 -7.3016 6.3468 19 6 5.3799 -9.0233 5.3034 20 7 5.5634 -9.5899 4.1296 21 14 5.9051 -9.9105 6.8611 22 1 4.7224 -10.1195 7.7343 23 1 6.4974 -11.2252 6.5061 24 1 6.9136 -9.0919 7.5809 25 6 4.7245 -5.3245 2.0549 26 6 4.3806 -4.8573 0.6371 27 6 2.1123 -1.1773 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.5445 2.1030 -0.0004 32 1 3.9610 2.2179 0.0009 33 1 1.7382 -3.9637 1.2050 34 1 2.2862 -2.3211 1.6280 35 1 3.7023 -3.2085 3.4180 36 1 2.0476 -3.8301 3.6325 37 1 2.7321 -7.0602 2.2567 38 1 4.4873 -5.0969 4.8036 39 1 2.8792 -5.8518 4.9158 40 1 4.5466 -7.5335 3.3768 41 1 5.9709 -10.4683 4.0734 42 1 5.1134 -6.3420 2.0183 43 1 5.4765 -4.6622 2.4838 44 1 3.6974 -5.5689 0.1735 45 1 5.2928 -4.7845 0.0450 46 1 1.5499 -2.0993 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328174838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:29 Heat of formation + Delta-G solvation = -51.644593 kcal Electronic energy + Delta-G solvation = -29677.325312 eV Core-core repulsion = 25568.632101 eV Total energy + Delta-G solvation = -4108.693212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.48501 -39.96690 -38.47053 -37.77445 -35.45570 -34.02215 -33.00574 -32.69547 -31.74553 -30.88692 -30.16614 -27.48454 -26.72832 -25.07508 -24.03066 -23.41662 -22.65294 -21.94282 -20.42523 -19.36939 -18.12405 -17.64277 -17.46429 -17.15883 -16.38889 -16.01812 -15.64406 -15.62051 -15.05327 -14.89473 -14.68447 -14.32629 -14.16785 -13.98955 -13.85747 -13.59970 -13.41449 -13.16353 -13.10773 -12.99040 -12.73575 -12.44512 -12.41545 -12.15490 -11.81327 -11.52929 -11.12703 -11.01540 -10.89819 -10.81314 -10.39175 -10.16908 -10.06677 -9.86986 -9.64778 -9.39561 -9.34431 -8.92989 -8.49848 -8.21612 -6.99792 -5.81960 -3.11175 0.62770 1.00262 1.98194 2.81119 3.06307 3.42388 3.47017 3.47817 3.60497 3.81585 4.02706 4.27263 4.35784 4.45644 4.52550 4.53988 4.69161 4.75999 4.80790 4.89362 5.00715 5.17599 5.25578 5.28081 5.40483 5.42420 5.46419 5.53296 5.64434 5.82893 5.89326 6.01177 6.03848 6.06262 6.17580 6.19650 6.38369 6.39016 6.49652 6.63022 6.68095 6.78144 7.50526 7.65703 7.94926 8.06140 8.34687 8.36749 9.47566 10.01473 10.35651 11.40752 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022047 B = 0.002587 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.723237 B =10819.212087 C =11253.967933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.477 5.477 3 C 0.127 3.873 4 C -0.267 4.267 5 C 0.408 3.592 6 O -0.487 6.487 7 C -0.293 4.293 8 C 0.577 3.423 9 O -0.520 6.520 10 N -0.609 5.609 11 C 0.105 3.895 12 C -0.117 4.117 13 C 0.131 3.869 14 O -0.563 6.563 15 C 0.129 3.871 16 N -0.730 5.730 17 C -0.242 4.242 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.934 5.934 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.156 4.156 26 C 0.120 3.880 27 C 0.164 3.836 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.165 0.835 32 H 0.154 0.846 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.384 0.616 38 H 0.025 0.975 39 H 0.028 0.972 40 H 0.381 0.619 41 H 0.257 0.743 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.559 22.120 -9.970 29.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 N -0.164 5.164 3 C 0.003 3.997 4 C -0.291 4.291 5 C 0.294 3.706 6 O -0.369 6.369 7 C -0.304 4.304 8 C 0.365 3.635 9 O -0.395 6.395 10 N -0.343 5.343 11 C -0.018 4.018 12 C -0.156 4.156 13 C 0.090 3.910 14 O -0.371 6.371 15 C 0.001 3.999 16 N -0.376 5.376 17 C -0.373 4.373 18 H 0.088 0.912 19 C -0.208 4.208 20 N -0.582 5.582 21 Si 0.740 3.260 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.195 4.195 26 C -0.002 4.002 27 C 0.035 3.965 28 H 0.102 0.898 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.182 0.818 32 H 0.171 0.829 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.233 0.767 38 H 0.043 0.957 39 H 0.046 0.954 40 H 0.216 0.784 41 H 0.067 0.933 42 H 0.110 0.890 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.109 0.891 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -16.840 22.593 -10.179 29.960 hybrid contribution 0.492 -1.231 0.838 1.568 sum -16.348 21.362 -9.341 28.475 Atomic orbital electron populations 1.22506 0.76021 1.05634 1.04576 1.42696 1.08644 1.04441 1.60654 1.21699 0.94305 0.88375 0.95320 1.22459 0.93144 1.01348 1.12190 1.18188 0.89250 0.86959 0.76227 1.90823 1.14457 1.89025 1.42558 1.22467 0.92480 0.97227 1.18247 1.17516 0.84162 0.82190 0.79614 1.90804 1.23319 1.82337 1.43077 1.48045 1.31414 1.10420 1.44432 1.21977 0.88401 1.00799 0.90625 1.21846 1.02344 0.94874 0.96536 1.21268 0.87150 0.89819 0.92781 1.86311 1.43006 1.23536 1.84230 1.21315 0.96256 0.88857 0.93509 1.42322 1.73008 1.15366 1.06868 1.19152 1.32840 0.98485 0.86828 0.91235 1.24735 1.01648 0.97588 0.96788 1.69619 1.49552 1.16899 1.22135 0.86243 0.78353 0.78942 0.82492 1.21258 1.21641 1.21245 1.22534 0.98383 1.03712 0.94877 1.21577 0.98665 0.82171 0.97763 1.22446 0.93235 0.89241 0.91606 0.89823 0.88950 0.88945 0.81817 0.82886 0.90340 0.90296 0.90305 0.90048 0.76706 0.95703 0.95410 0.78378 0.93339 0.89011 0.90791 0.90961 0.89149 0.80995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 -0.02 10.53 59.85 0.63 0.61 16 2 N -0.48 -1.99 2.97 -124.39 -0.37 -2.36 16 3 C 0.13 0.58 10.17 -17.09 -0.17 0.41 16 4 C -0.27 -2.39 10.01 -39.47 -0.40 -2.79 16 5 C 0.41 5.95 6.94 -34.68 -0.24 5.71 16 6 O -0.49 -9.72 17.01 -7.00 -0.12 -9.84 16 7 C -0.29 -3.76 5.39 -102.71 -0.55 -4.31 16 8 C 0.58 9.40 7.26 -12.58 -0.09 9.31 16 9 O -0.52 -10.93 15.79 -6.57 -0.10 -11.03 16 10 N -0.61 -8.51 2.97 -174.08 -0.52 -9.03 16 11 C 0.10 1.12 4.61 -3.71 -0.02 1.10 16 12 C -0.12 -1.49 5.11 -26.61 -0.14 -1.63 16 13 C 0.13 2.06 0.71 -90.58 -0.06 2.00 16 14 O -0.56 -8.77 11.70 -35.23 -0.41 -9.18 16 15 C 0.13 2.53 5.43 -4.05 -0.02 2.50 16 16 N -0.73 -17.67 5.07 -59.91 -0.30 -17.98 16 17 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 18 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 20 N -0.93 -27.58 13.06 55.49 0.72 -26.86 16 21 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 C -0.16 -2.59 4.88 -26.61 -0.13 -2.72 16 26 C 0.12 1.82 6.20 -3.71 -0.02 1.80 16 27 C 0.16 1.18 7.63 -16.54 -0.13 1.06 16 28 H 0.08 -0.10 8.14 -51.93 -0.42 -0.52 16 29 H 0.09 -0.19 7.96 -51.93 -0.41 -0.61 16 30 H 0.09 -0.11 7.96 -51.93 -0.41 -0.52 16 31 H 0.16 0.04 7.97 -52.49 -0.42 -0.38 16 32 H 0.15 1.16 8.06 -52.49 -0.42 0.73 16 33 H 0.08 0.76 7.77 -51.93 -0.40 0.35 16 34 H 0.08 0.66 4.57 -51.93 -0.24 0.42 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.38 6.11 8.19 45.56 0.37 6.48 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.38 9.42 5.55 -40.82 -0.23 9.20 16 41 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 42 H 0.09 1.68 6.53 -51.93 -0.34 1.35 16 43 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.07 1.01 7.81 -51.93 -0.41 0.61 16 45 H 0.09 1.51 6.99 -51.93 -0.36 1.15 16 46 H 0.17 0.83 6.23 -52.48 -0.33 0.51 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -40.08 370.39 -7.81 -47.90 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.68 Total: 9.70 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -1.59 Total: 5.81 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.47 Total: -56.22 kcal Atomic # 8 Polarization: -29.42 SS G_CDS: -0.64 Total: -30.06 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -40.08 -7.81 -47.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328174838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.749 kcal (2) G-P(sol) polarization free energy of solvation -40.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds