Wall clock time and date at job start Tue Mar 31 2020 18:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.35591 * 118.80426 * 2 1 4 4 C 1.34859 * 121.79655 * 179.97438 * 3 2 1 5 5 C 1.41678 * 119.33980 * 359.75327 * 4 3 2 6 6 O 1.22082 * 121.06991 * 180.25371 * 5 4 3 7 7 C 1.47097 * 117.86234 * 0.50670 * 5 4 3 8 8 C 1.47292 * 120.88022 * 179.77659 * 7 5 4 9 9 O 1.21609 * 120.00123 * 321.89861 * 8 7 5 10 10 N 1.34783 * 119.99576 * 141.90191 * 8 7 5 11 11 C 1.46922 * 120.63188 * 354.75442 * 10 8 7 12 12 C 1.53197 * 108.77155 * 233.58760 * 11 10 8 13 13 C 1.53040 * 109.31707 * 305.36535 * 12 11 10 14 14 O 1.42901 * 109.45880 * 301.35171 * 13 12 11 15 15 C 1.52993 * 109.46410 * 181.38582 * 13 12 11 16 16 N 1.46497 * 109.47337 * 184.99905 * 15 13 12 17 17 C 1.36935 * 119.99945 * 179.97438 * 16 15 13 18 18 H 1.07995 * 120.00063 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99906 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99961 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00015 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47078 * 60.00393 * 21 19 17 23 23 H 1.48498 * 109.47105 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47103 * 300.00264 * 21 19 17 25 25 C 1.53044 * 109.53657 * 61.36432 * 13 12 11 26 26 C 1.46930 * 120.62380 * 174.73459 * 10 8 7 27 27 C 1.34347 * 118.80313 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.47183 * 269.97771 * 1 2 3 29 29 H 1.08998 * 109.47301 * 29.97651 * 1 2 3 30 30 H 1.09000 * 109.47508 * 149.98315 * 1 2 3 31 31 H 1.07994 * 119.09815 * 359.97438 * 3 2 1 32 32 H 1.07999 * 120.32829 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.58393 * 113.80451 * 11 10 8 34 34 H 1.08997 * 109.59179 * 353.37396 * 11 10 8 35 35 H 1.08997 * 109.49780 * 65.32193 * 12 11 10 36 36 H 1.09007 * 109.49408 * 185.41735 * 12 11 10 37 37 H 0.96697 * 114.00049 * 179.97438 * 14 13 12 38 38 H 1.08999 * 109.47330 * 305.00641 * 15 13 12 39 39 H 1.09004 * 109.47132 * 65.00318 * 15 13 12 40 40 H 0.97004 * 119.99929 * 0.02562 * 16 15 13 41 41 H 0.96995 * 120.00320 * 180.02562 * 20 19 17 42 42 H 1.08992 * 109.49766 * 178.68689 * 25 13 12 43 43 H 1.09001 * 109.49680 * 58.58911 * 25 13 12 44 44 H 1.08996 * 109.58556 * 246.19586 * 26 10 8 45 45 H 1.08998 * 109.58815 * 6.62633 * 26 10 8 46 46 H 1.08003 * 119.81332 * 359.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1183 1.1881 0.0000 4 6 3.4651 1.2585 0.0005 5 6 4.2228 0.0614 0.0064 6 8 5.4433 0.0883 0.0116 7 6 3.4917 -1.2150 0.0002 8 6 4.2129 -2.4993 0.0008 9 8 5.2362 -2.6223 -0.6445 10 7 3.7384 -3.5381 0.7166 11 6 2.5692 -3.3731 1.5908 12 6 2.9334 -3.8570 2.9979 13 6 3.4618 -5.2911 2.9191 14 8 2.4651 -6.1344 2.3383 15 6 3.7943 -5.7900 4.3267 16 7 4.4108 -7.1162 4.2419 17 6 4.7962 -7.7664 5.3837 18 1 4.6453 -7.3016 6.3468 19 6 5.3799 -9.0233 5.3034 20 7 5.5634 -9.5899 4.1296 21 14 5.9051 -9.9105 6.8611 22 1 4.7224 -10.1195 7.7343 23 1 6.4974 -11.2252 6.5061 24 1 6.9136 -9.0919 7.5809 25 6 4.7245 -5.3245 2.0549 26 6 4.3806 -4.8573 0.6371 27 6 2.1123 -1.1773 -0.0005 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3634 -0.8898 -0.5141 31 1 1.5445 2.1030 -0.0004 32 1 3.9610 2.2179 0.0009 33 1 1.7382 -3.9637 1.2050 34 1 2.2862 -2.3211 1.6280 35 1 3.7023 -3.2085 3.4180 36 1 2.0476 -3.8301 3.6325 37 1 2.7321 -7.0602 2.2567 38 1 4.4873 -5.0969 4.8036 39 1 2.8792 -5.8518 4.9158 40 1 4.5466 -7.5335 3.3768 41 1 5.9709 -10.4683 4.0734 42 1 5.1134 -6.3420 2.0183 43 1 5.4765 -4.6622 2.4838 44 1 3.6974 -5.5689 0.1735 45 1 5.2928 -4.7845 0.0450 46 1 1.5499 -2.0993 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328174838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:28 Heat of formation + Delta-G solvation = -83.934972 kcal Electronic energy + Delta-G solvation = -29678.725528 eV Core-core repulsion = 25568.632101 eV Total energy + Delta-G solvation = -4110.093428 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.23882 -41.04691 -39.64150 -38.83821 -36.81508 -35.79154 -33.89644 -33.42664 -33.22791 -32.23318 -31.51691 -28.42720 -27.61441 -26.13992 -25.43307 -24.55350 -23.57670 -23.37024 -21.63437 -20.43903 -19.47985 -18.93722 -18.29387 -17.94016 -17.38864 -17.11339 -16.74793 -16.62021 -16.50032 -16.01110 -15.81516 -15.67289 -15.38370 -15.03010 -14.91750 -14.89169 -14.51100 -14.47299 -14.13815 -14.12842 -13.62159 -13.41132 -13.19521 -13.15871 -12.99604 -12.76608 -12.72391 -12.62082 -12.33084 -12.22319 -12.14629 -11.97790 -11.41193 -11.16868 -10.98168 -10.77663 -10.57761 -10.38828 -9.68781 -9.04059 -9.02530 -7.98040 -5.26777 -0.12135 0.37633 1.46183 1.48738 1.53946 1.54788 1.69236 2.02344 2.53743 2.72278 3.23512 3.34048 3.38970 3.45645 3.63775 3.72948 3.80653 3.87526 3.90811 4.00484 4.14764 4.21232 4.26666 4.39418 4.47036 4.53516 4.63093 4.66695 4.67859 4.77416 4.81948 4.82669 4.87902 4.94161 4.96871 5.05678 5.11258 5.30656 5.33157 5.46910 5.54754 5.73300 5.82728 6.23660 6.40490 6.71186 7.07003 7.19706 7.31231 8.03174 8.27292 9.24624 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022047 B = 0.002587 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1269.723237 B =10819.212087 C =11253.967933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.458 5.458 3 C 0.171 3.829 4 C -0.302 4.302 5 C 0.380 3.620 6 O -0.582 6.582 7 C -0.350 4.350 8 C 0.570 3.430 9 O -0.588 6.588 10 N -0.605 5.605 11 C 0.107 3.893 12 C -0.116 4.116 13 C 0.143 3.857 14 O -0.554 6.554 15 C 0.127 3.873 16 N -0.739 5.739 17 C -0.249 4.249 18 H 0.073 0.927 19 C -0.070 4.070 20 N -0.965 5.965 21 Si 0.972 3.028 22 H -0.275 1.275 23 H -0.295 1.295 24 H -0.282 1.282 25 C -0.148 4.148 26 C 0.127 3.873 27 C 0.212 3.788 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.109 0.891 31 H 0.228 0.772 32 H 0.157 0.843 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.109 0.891 37 H 0.382 0.618 38 H 0.018 0.982 39 H 0.033 0.967 40 H 0.376 0.624 41 H 0.252 0.748 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.090 0.910 45 H 0.063 0.937 46 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.386 24.160 -9.328 34.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 N -0.140 5.140 3 C 0.046 3.954 4 C -0.325 4.325 5 C 0.274 3.726 6 O -0.472 6.472 7 C -0.360 4.360 8 C 0.361 3.639 9 O -0.469 6.469 10 N -0.338 5.338 11 C -0.014 4.014 12 C -0.155 4.155 13 C 0.102 3.898 14 O -0.360 6.360 15 C 0.000 4.000 16 N -0.384 5.384 17 C -0.381 4.381 18 H 0.090 0.910 19 C -0.263 4.263 20 N -0.616 5.616 21 Si 0.801 3.199 22 H -0.201 1.201 23 H -0.221 1.221 24 H -0.209 1.209 25 C -0.187 4.187 26 C 0.004 3.996 27 C 0.077 3.923 28 H 0.124 0.876 29 H 0.141 0.859 30 H 0.128 0.872 31 H 0.244 0.756 32 H 0.175 0.825 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.127 0.873 37 H 0.231 0.769 38 H 0.036 0.964 39 H 0.051 0.949 40 H 0.210 0.790 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.108 0.892 45 H 0.082 0.918 46 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -22.808 24.688 -9.498 34.927 hybrid contribution 2.020 -1.776 0.659 2.769 sum -20.788 22.912 -8.839 32.175 Atomic orbital electron populations 1.23074 0.71757 1.08234 1.06864 1.43384 1.11096 1.03456 1.56059 1.22471 0.92949 0.90323 0.89696 1.22337 0.95002 0.99401 1.15763 1.19059 0.88827 0.89518 0.75147 1.90766 1.17755 1.90213 1.48511 1.22053 0.94741 0.94722 1.24501 1.18173 0.83566 0.83502 0.78621 1.90750 1.26534 1.83505 1.46080 1.48109 1.32006 1.09279 1.44381 1.22268 0.87457 1.03134 0.88579 1.21887 1.03113 0.91958 0.98512 1.21153 0.86915 0.91709 0.90034 1.86303 1.42414 1.23438 1.83886 1.21486 0.95644 0.86659 0.96199 1.42468 1.73195 1.16841 1.05865 1.19537 1.31936 0.98674 0.87919 0.90954 1.25518 1.02520 0.98643 0.99618 1.69768 1.50814 1.16992 1.23984 0.85243 0.78117 0.77370 0.79205 1.20121 1.22102 1.20879 1.22399 0.98548 1.01685 0.96102 1.21381 0.98377 0.83581 0.96266 1.22732 0.91123 0.91661 0.86772 0.87582 0.85873 0.87213 0.75594 0.82500 0.87587 0.87254 0.91181 0.87280 0.76891 0.96415 0.94907 0.78994 0.93895 0.91398 0.93094 0.89160 0.91827 0.77516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.35 10.53 127.77 1.35 0.99 16 2 N -0.46 -0.90 2.97 -547.47 -1.63 -2.52 16 3 C 0.17 0.64 10.17 83.34 0.85 1.49 16 4 C -0.30 -5.11 10.01 22.34 0.22 -4.89 16 5 C 0.38 11.91 6.94 25.45 0.18 12.09 16 6 O -0.58 -26.41 17.01 5.74 0.10 -26.32 16 7 C -0.35 -8.96 5.39 -18.63 -0.10 -9.06 16 8 C 0.57 19.68 7.26 86.62 0.63 20.31 16 9 O -0.59 -27.49 15.79 7.26 0.11 -27.37 16 10 N -0.60 -16.93 2.97 -822.93 -2.45 -19.38 16 11 C 0.11 1.92 4.61 86.36 0.40 2.32 16 12 C -0.12 -2.67 5.11 30.67 0.16 -2.51 16 13 C 0.14 4.41 0.71 -10.77 -0.01 4.41 16 14 O -0.55 -16.18 11.70 -148.98 -1.74 -17.93 16 15 C 0.13 4.97 5.43 86.38 0.47 5.44 16 16 N -0.74 -36.38 5.07 -343.46 -1.74 -38.12 16 17 C -0.25 -13.81 9.99 84.04 0.84 -12.97 16 18 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 19 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 20 N -0.97 -58.24 13.06 21.65 0.28 -57.96 16 21 Si 0.97 46.19 29.55 68.60 2.03 48.22 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 24 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 25 C -0.15 -5.18 4.88 30.67 0.15 -5.03 16 26 C 0.13 4.03 6.20 86.36 0.54 4.56 16 27 C 0.21 2.13 7.63 84.25 0.64 2.77 16 28 H 0.11 -1.19 8.14 -2.39 -0.02 -1.21 16 29 H 0.12 -1.66 7.96 -2.39 -0.02 -1.67 16 30 H 0.11 -1.18 7.96 -2.39 -0.02 -1.20 16 31 H 0.23 -1.82 7.97 -2.91 -0.02 -1.84 16 32 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.11 1.44 7.77 -2.39 -0.02 1.42 16 34 H 0.11 1.30 4.57 -2.39 -0.01 1.29 16 35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.11 1.97 8.14 -2.38 -0.02 1.96 16 37 H 0.38 11.88 8.19 -74.06 -0.61 11.27 16 38 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.38 19.17 5.55 -92.71 -0.51 18.66 16 41 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 42 H 0.07 2.68 6.53 -2.39 -0.02 2.66 16 43 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.09 2.53 7.81 -2.39 -0.02 2.51 16 45 H 0.06 2.37 6.99 -2.39 -0.02 2.35 16 46 H 0.21 0.68 6.23 -2.91 -0.02 0.67 16 Total: -1.00 -101.43 370.39 1.65 -99.78 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -0.09 Total: 25.23 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: 6.77 Total: 16.37 kcal Atomic # 7 Polarization: -112.45 SS G_CDS: -5.53 Total: -117.98 kcal Atomic # 8 Polarization: -70.09 SS G_CDS: -1.53 Total: -71.62 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -101.43 1.65 -99.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328174838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.849 kcal (2) G-P(sol) polarization free energy of solvation -101.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds