Wall clock time and date at job start Tue Mar 31 2020 18:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35434 * 119.47117 * 2 1 4 4 C 1.35759 * 121.23170 * 179.97438 * 3 2 1 5 5 C 1.39465 * 120.13300 * 359.71901 * 4 3 2 6 6 C 1.39342 * 118.95628 * 0.54539 * 5 4 3 7 7 C 1.47076 * 120.58753 * 179.73460 * 6 5 4 8 8 O 1.21653 * 120.00261 * 46.68400 * 7 6 5 9 9 N 1.34783 * 120.00108 * 226.68527 * 7 6 5 10 10 C 1.46920 * 120.63105 * 175.04342 * 9 7 6 11 11 C 1.53192 * 108.77940 * 233.58964 * 10 9 7 12 12 C 1.53039 * 109.30968 * 305.36792 * 11 10 9 13 13 O 1.42901 * 109.46239 * 301.34092 * 12 11 10 14 14 C 1.53007 * 109.45978 * 181.38543 * 12 11 10 15 15 N 1.46501 * 109.46828 * 185.00225 * 14 12 11 16 16 C 1.36940 * 119.99710 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99998 * 359.97438 * 16 15 14 18 18 C 1.38816 * 120.00085 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99926 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99871 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46984 * 60.00024 * 20 18 16 22 22 H 1.48497 * 109.46813 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47144 * 299.99999 * 20 18 16 24 24 C 1.53045 * 109.54019 * 61.36313 * 12 11 10 25 25 C 1.46923 * 120.62846 * 355.02615 * 9 7 6 26 26 C 1.34654 * 119.47117 * 179.97438 * 2 1 3 27 27 O 1.21884 * 120.10752 * 0.05144 * 26 2 1 28 28 H 1.09003 * 109.46961 * 270.02434 * 1 2 3 29 29 H 1.09000 * 109.47349 * 30.02101 * 1 2 3 30 30 H 1.08998 * 109.46991 * 150.02635 * 1 2 3 31 31 H 1.08002 * 119.38193 * 359.95066 * 3 2 1 32 32 H 1.08003 * 119.93198 * 180.02562 * 4 3 2 33 33 H 1.07995 * 120.52371 * 180.28320 * 5 4 3 34 34 H 1.08995 * 109.58694 * 113.80238 * 10 9 7 35 35 H 1.09003 * 109.59235 * 353.37796 * 10 9 7 36 36 H 1.09002 * 109.49665 * 65.31318 * 11 10 9 37 37 H 1.08994 * 109.50083 * 185.41452 * 11 10 9 38 38 H 0.96696 * 114.00481 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.46898 * 304.99523 * 14 12 11 40 40 H 1.08995 * 109.47098 * 64.99777 * 14 12 11 41 41 H 0.97001 * 120.00754 * 359.97438 * 15 14 12 42 42 H 0.96995 * 120.00014 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.49671 * 178.68392 * 24 12 11 44 44 H 1.08999 * 109.49380 * 58.58419 * 24 12 11 45 45 H 1.09000 * 109.58492 * 246.19743 * 25 9 7 46 46 H 1.09001 * 109.58627 * 6.62088 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1313 1.1791 0.0000 4 6 3.4883 1.2208 0.0005 5 6 4.2251 0.0367 0.0070 6 6 3.5464 -1.1802 0.0012 7 6 4.2877 -2.4506 0.0019 8 8 5.2150 -2.6134 0.7723 9 7 3.9396 -3.4344 -0.8511 10 6 4.7360 -4.6659 -0.9386 11 6 5.1294 -4.8960 -2.4011 12 6 3.8693 -4.8994 -3.2695 13 8 2.9830 -5.9256 -2.8186 14 6 4.2550 -5.1634 -4.7265 15 7 3.0661 -5.0486 -5.5748 16 6 3.1679 -5.2443 -6.9263 17 1 4.1247 -5.4830 -7.3668 18 6 2.0414 -5.1361 -7.7301 19 7 0.8753 -4.8457 -7.1932 20 14 2.1804 -5.4024 -9.5738 21 1 2.6800 -6.7754 -9.8393 22 1 0.8450 -5.2322 -10.2006 23 1 3.1267 -4.4119 -10.1470 24 6 3.1718 -3.5411 -3.1649 25 6 2.7563 -3.2957 -1.7109 26 6 2.1275 -1.1723 0.0005 27 8 1.5103 -2.2233 0.0000 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.5727 2.1034 -0.0008 32 1 3.9982 2.1729 0.0009 33 1 5.3048 0.0625 0.0120 34 1 4.1449 -5.5094 -0.5821 35 1 5.6348 -4.5639 -0.3302 36 1 5.7949 -4.0974 -2.7289 37 1 5.6381 -5.8554 -2.4944 38 1 2.1614 -5.9863 -3.3248 39 1 4.9993 -4.4329 -5.0433 40 1 4.6699 -6.1673 -4.8162 41 1 2.2068 -4.8339 -5.1793 42 1 0.0882 -4.7697 -7.7549 43 1 2.2873 -3.5363 -3.8017 44 1 3.8558 -2.7553 -3.4854 45 1 2.0037 -4.0275 -1.4175 46 1 2.3488 -2.2896 -1.6122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328207463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:23 Heat of formation + Delta-G solvation = -45.715294 kcal Electronic energy + Delta-G solvation = -30230.147075 eV Core-core repulsion = 26121.710977 eV Total energy + Delta-G solvation = -4108.436098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.90944 -39.88770 -38.28156 -37.44293 -35.23606 -34.80881 -33.96268 -31.86854 -31.14361 -30.33809 -30.06707 -28.05379 -26.75830 -25.13729 -23.57596 -23.18689 -22.92454 -21.81520 -20.34298 -19.23511 -18.19216 -17.69934 -17.41950 -17.10803 -16.47572 -16.03438 -15.74166 -15.47947 -14.94109 -14.84866 -14.78848 -14.30920 -14.10652 -13.78419 -13.53995 -13.32998 -13.13159 -12.97637 -12.85628 -12.71736 -12.59164 -12.43402 -12.28378 -11.86907 -11.66065 -11.24488 -11.01879 -10.93383 -10.83972 -10.78598 -10.41299 -10.25731 -10.19176 -10.06484 -9.76263 -9.61151 -9.24113 -8.91660 -8.33818 -8.26258 -6.97857 -5.81167 -3.09913 0.23127 1.51939 2.16936 2.71627 3.16526 3.42105 3.44700 3.46545 3.47487 4.09921 4.22951 4.54874 4.55644 4.65770 4.69005 4.73356 4.85681 4.91273 5.05553 5.11507 5.26959 5.34263 5.37103 5.47405 5.54277 5.59655 5.64066 5.72055 5.82503 5.87049 5.98300 6.06125 6.09450 6.16764 6.17297 6.26821 6.48450 6.55335 6.60416 6.71073 6.78001 6.83359 7.60961 7.66681 7.67206 8.19248 8.29232 8.37967 9.48479 10.03374 10.37911 11.41617 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.003313 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.633484 B = 8448.251275 C = 9590.839395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 N -0.494 5.494 3 C 0.153 3.847 4 C -0.238 4.238 5 C 0.044 3.956 6 C -0.262 4.262 7 C 0.583 3.417 8 O -0.553 6.553 9 N -0.587 5.587 10 C 0.119 3.881 11 C -0.116 4.116 12 C 0.130 3.870 13 O -0.560 6.560 14 C 0.128 3.872 15 N -0.730 5.730 16 C -0.240 4.240 17 H 0.070 0.930 18 C -0.012 4.012 19 N -0.935 5.935 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.162 4.162 25 C 0.123 3.877 26 C 0.520 3.480 27 O -0.523 6.523 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.167 0.833 32 H 0.153 0.847 33 H 0.143 0.857 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.382 0.618 39 H 0.025 0.975 40 H 0.029 0.971 41 H 0.381 0.619 42 H 0.256 0.744 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.078 0.922 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.611 15.537 16.756 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 N -0.204 5.204 3 C 0.024 3.976 4 C -0.261 4.261 5 C 0.021 3.979 6 C -0.269 4.269 7 C 0.371 3.629 8 O -0.433 6.433 9 N -0.318 5.318 10 C -0.004 4.004 11 C -0.154 4.154 12 C 0.089 3.911 13 O -0.367 6.367 14 C 0.000 4.000 15 N -0.376 5.376 16 C -0.371 4.371 17 H 0.088 0.912 18 C -0.208 4.208 19 N -0.583 5.583 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.200 4.200 25 C 0.001 3.999 26 C 0.321 3.679 27 O -0.404 6.404 28 H 0.097 0.903 29 H 0.107 0.893 30 H 0.119 0.881 31 H 0.184 0.816 32 H 0.171 0.829 33 H 0.161 0.839 34 H 0.094 0.906 35 H 0.106 0.894 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.043 0.957 40 H 0.047 0.953 41 H 0.216 0.784 42 H 0.066 0.934 43 H 0.107 0.893 44 H 0.087 0.913 45 H 0.097 0.903 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.147 14.571 17.409 22.804 hybrid contribution -0.785 0.258 -1.562 1.767 sum 1.362 14.829 15.847 21.745 Atomic orbital electron populations 1.22281 0.76473 1.05676 1.04196 1.45438 1.09717 1.06748 1.58448 1.22176 0.94178 0.89509 0.91785 1.20626 0.92351 0.99602 1.13547 1.21864 1.01175 0.90358 0.84484 1.20934 0.92675 0.95574 1.17721 1.17409 0.82717 0.82558 0.80218 1.90766 1.31326 1.81302 1.39954 1.47935 1.27983 1.16937 1.38908 1.21529 0.96117 0.86060 0.96654 1.21846 0.96285 1.02891 0.94389 1.21287 0.89735 0.86621 0.93468 1.86371 1.33578 1.55888 1.60877 1.21335 0.91426 0.98464 0.88739 1.42337 1.05576 1.85408 1.04246 1.19181 0.94380 1.40149 0.83419 0.91225 1.24720 0.95452 1.02525 0.98094 1.69628 0.98692 1.55410 1.34592 0.86250 0.76509 0.77999 0.85324 1.21236 1.21669 1.21296 1.22661 1.02564 0.98111 0.96702 1.22109 0.86364 1.03320 0.88156 1.16860 0.88250 0.82991 0.79749 1.91031 1.69446 1.28741 1.51222 0.90308 0.89310 0.88131 0.81562 0.82930 0.83896 0.90609 0.89450 0.90561 0.89981 0.76960 0.95744 0.95335 0.78415 0.93428 0.89341 0.91332 0.90335 0.89674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.32 10.35 59.85 0.62 0.94 16 2 N -0.49 -4.23 2.98 -126.76 -0.38 -4.61 16 3 C 0.15 0.82 10.25 -16.85 -0.17 0.65 16 4 C -0.24 -1.44 9.99 -40.01 -0.40 -1.84 16 5 C 0.04 0.43 9.83 -38.71 -0.38 0.05 16 6 C -0.26 -3.52 5.18 -104.50 -0.54 -4.06 16 7 C 0.58 9.65 7.05 -12.67 -0.09 9.56 16 8 O -0.55 -10.32 16.45 5.23 0.09 -10.24 16 9 N -0.59 -9.59 2.96 -174.17 -0.52 -10.11 16 10 C 0.12 1.85 6.18 -3.71 -0.02 1.83 16 11 C -0.12 -1.77 5.11 -26.61 -0.14 -1.90 16 12 C 0.13 2.27 0.71 -90.57 -0.06 2.20 16 13 O -0.56 -10.17 11.70 -35.23 -0.41 -10.58 16 14 C 0.13 2.64 5.43 -4.04 -0.02 2.62 16 15 N -0.73 -18.04 5.07 -59.90 -0.30 -18.35 16 16 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 17 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.58 13.06 55.49 0.72 -26.85 16 20 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 C -0.16 -2.76 4.88 -26.61 -0.13 -2.89 16 25 C 0.12 2.00 4.20 -3.71 -0.02 1.98 16 26 C 0.52 6.79 5.89 -14.91 -0.09 6.70 16 27 O -0.52 -8.37 12.51 5.02 0.06 -8.30 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.23 8.00 -51.93 -0.42 -0.18 16 30 H 0.10 0.79 7.38 -51.93 -0.38 0.41 16 31 H 0.17 0.15 8.02 -52.49 -0.42 -0.28 16 32 H 0.15 0.44 8.06 -52.48 -0.42 0.02 16 33 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.08 1.23 7.81 -51.93 -0.41 0.82 16 35 H 0.09 1.34 7.03 -51.93 -0.37 0.97 16 36 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.38 6.89 8.19 45.56 0.37 7.26 16 39 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.38 9.64 5.55 -40.82 -0.23 9.41 16 42 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.09 1.67 6.53 -51.93 -0.34 1.33 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.08 1.40 7.51 -51.93 -0.39 1.01 16 46 H 0.09 1.36 3.94 -51.93 -0.20 1.15 16 LS Contribution 367.19 15.07 5.53 5.53 Total: -1.00 -36.24 367.19 -7.62 -43.86 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -5.70 Total: 13.85 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -1.69 Total: 8.57 kcal Atomic # 7 Polarization: -59.45 SS G_CDS: -0.47 Total: -59.92 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.26 Total: -29.12 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.24 -7.62 -43.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328207463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.856 kcal (2) G-P(sol) polarization free energy of solvation -36.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds