Wall clock time and date at job start Tue Mar 31 2020 18:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.35434 * 119.47117 * 2 1 4 4 C 1.35759 * 121.23170 * 179.97438 * 3 2 1 5 5 C 1.39465 * 120.13300 * 359.71901 * 4 3 2 6 6 C 1.39342 * 118.95628 * 0.54539 * 5 4 3 7 7 C 1.47076 * 120.58753 * 179.73460 * 6 5 4 8 8 O 1.21653 * 120.00261 * 46.68400 * 7 6 5 9 9 N 1.34783 * 120.00108 * 226.68527 * 7 6 5 10 10 C 1.46920 * 120.63105 * 175.04342 * 9 7 6 11 11 C 1.53192 * 108.77940 * 233.58964 * 10 9 7 12 12 C 1.53039 * 109.30968 * 305.36792 * 11 10 9 13 13 O 1.42901 * 109.46239 * 301.34092 * 12 11 10 14 14 C 1.53007 * 109.45978 * 181.38543 * 12 11 10 15 15 N 1.46501 * 109.46828 * 185.00225 * 14 12 11 16 16 C 1.36940 * 119.99710 * 179.97438 * 15 14 12 17 17 H 1.08006 * 119.99998 * 359.97438 * 16 15 14 18 18 C 1.38816 * 120.00085 * 179.97438 * 16 15 14 19 19 N 1.31619 * 119.99926 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99871 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46984 * 60.00024 * 20 18 16 22 22 H 1.48497 * 109.46813 * 179.97438 * 20 18 16 23 23 H 1.48495 * 109.47144 * 299.99999 * 20 18 16 24 24 C 1.53045 * 109.54019 * 61.36313 * 12 11 10 25 25 C 1.46923 * 120.62846 * 355.02615 * 9 7 6 26 26 C 1.34654 * 119.47117 * 179.97438 * 2 1 3 27 27 O 1.21884 * 120.10752 * 0.05144 * 26 2 1 28 28 H 1.09003 * 109.46961 * 270.02434 * 1 2 3 29 29 H 1.09000 * 109.47349 * 30.02101 * 1 2 3 30 30 H 1.08998 * 109.46991 * 150.02635 * 1 2 3 31 31 H 1.08002 * 119.38193 * 359.95066 * 3 2 1 32 32 H 1.08003 * 119.93198 * 180.02562 * 4 3 2 33 33 H 1.07995 * 120.52371 * 180.28320 * 5 4 3 34 34 H 1.08995 * 109.58694 * 113.80238 * 10 9 7 35 35 H 1.09003 * 109.59235 * 353.37796 * 10 9 7 36 36 H 1.09002 * 109.49665 * 65.31318 * 11 10 9 37 37 H 1.08994 * 109.50083 * 185.41452 * 11 10 9 38 38 H 0.96696 * 114.00481 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.46898 * 304.99523 * 14 12 11 40 40 H 1.08995 * 109.47098 * 64.99777 * 14 12 11 41 41 H 0.97001 * 120.00754 * 359.97438 * 15 14 12 42 42 H 0.96995 * 120.00014 * 179.97438 * 19 18 16 43 43 H 1.08997 * 109.49671 * 178.68392 * 24 12 11 44 44 H 1.08999 * 109.49380 * 58.58419 * 24 12 11 45 45 H 1.09000 * 109.58492 * 246.19743 * 25 9 7 46 46 H 1.09001 * 109.58627 * 6.62088 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1313 1.1791 0.0000 4 6 3.4883 1.2208 0.0005 5 6 4.2251 0.0367 0.0070 6 6 3.5464 -1.1802 0.0012 7 6 4.2877 -2.4506 0.0019 8 8 5.2150 -2.6134 0.7723 9 7 3.9396 -3.4344 -0.8511 10 6 4.7360 -4.6659 -0.9386 11 6 5.1294 -4.8960 -2.4011 12 6 3.8693 -4.8994 -3.2695 13 8 2.9830 -5.9256 -2.8186 14 6 4.2550 -5.1634 -4.7265 15 7 3.0661 -5.0486 -5.5748 16 6 3.1679 -5.2443 -6.9263 17 1 4.1247 -5.4830 -7.3668 18 6 2.0414 -5.1361 -7.7301 19 7 0.8753 -4.8457 -7.1932 20 14 2.1804 -5.4024 -9.5738 21 1 2.6800 -6.7754 -9.8393 22 1 0.8450 -5.2322 -10.2006 23 1 3.1267 -4.4119 -10.1470 24 6 3.1718 -3.5411 -3.1649 25 6 2.7563 -3.2957 -1.7109 26 6 2.1275 -1.1723 0.0005 27 8 1.5103 -2.2233 0.0000 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5134 31 1 1.5727 2.1034 -0.0008 32 1 3.9982 2.1729 0.0009 33 1 5.3048 0.0625 0.0120 34 1 4.1449 -5.5094 -0.5821 35 1 5.6348 -4.5639 -0.3302 36 1 5.7949 -4.0974 -2.7289 37 1 5.6381 -5.8554 -2.4944 38 1 2.1614 -5.9863 -3.3248 39 1 4.9993 -4.4329 -5.0433 40 1 4.6699 -6.1673 -4.8162 41 1 2.2068 -4.8339 -5.1793 42 1 0.0882 -4.7697 -7.7549 43 1 2.2873 -3.5363 -3.8017 44 1 3.8558 -2.7553 -3.4854 45 1 2.0037 -4.0275 -1.4175 46 1 2.3488 -2.2896 -1.6122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328207463.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:15:22 Heat of formation + Delta-G solvation = -73.451630 kcal Electronic energy + Delta-G solvation = -30231.349813 eV Core-core repulsion = 26121.710977 eV Total energy + Delta-G solvation = -4109.638836 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.73822 -41.11463 -39.65069 -38.30747 -36.70248 -35.79700 -35.52181 -33.50330 -32.58075 -31.82152 -31.03915 -28.61770 -28.34060 -26.29750 -25.14847 -24.52558 -23.68207 -23.27380 -21.68715 -20.45052 -19.49574 -19.12907 -18.45805 -17.90338 -17.41001 -17.31956 -16.90492 -16.74300 -16.51304 -16.11530 -15.85834 -15.66134 -15.49747 -15.06144 -14.92151 -14.67397 -14.46528 -14.30828 -14.03073 -13.61562 -13.50110 -13.41270 -13.24628 -13.08966 -12.98550 -12.83492 -12.74089 -12.51011 -12.30174 -12.16580 -12.12320 -11.97073 -11.35594 -11.32035 -11.05219 -10.97420 -10.89369 -10.68167 -9.65141 -9.03904 -9.03226 -7.96761 -5.26089 -0.45747 0.81312 1.41551 1.47436 1.49996 1.56090 1.73665 2.03147 2.54611 2.59347 3.22195 3.39436 3.45512 3.59858 3.66358 3.72622 3.83268 3.89768 4.00468 4.05333 4.18370 4.21013 4.29448 4.38478 4.41703 4.45221 4.56405 4.69470 4.74024 4.80997 4.82567 4.83712 4.89079 4.95393 4.97735 5.05070 5.10165 5.23461 5.29389 5.47765 5.51626 5.54365 5.92750 6.24246 6.36776 6.68856 6.84754 7.06671 7.31852 8.02285 8.28135 9.25927 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013383 B = 0.003313 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.633484 B = 8448.251275 C = 9590.839395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.492 5.492 3 C 0.178 3.822 4 C -0.241 4.241 5 C 0.063 3.937 6 C -0.323 4.323 7 C 0.578 3.422 8 O -0.587 6.587 9 N -0.593 5.593 10 C 0.120 3.880 11 C -0.108 4.108 12 C 0.136 3.864 13 O -0.564 6.564 14 C 0.131 3.869 15 N -0.737 5.737 16 C -0.251 4.251 17 H 0.073 0.927 18 C -0.067 4.067 19 N -0.965 5.965 20 Si 0.973 3.027 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.278 1.278 24 C -0.150 4.150 25 C 0.142 3.858 26 C 0.508 3.492 27 O -0.574 6.574 28 H 0.090 0.910 29 H 0.133 0.867 30 H 0.072 0.928 31 H 0.228 0.772 32 H 0.196 0.804 33 H 0.149 0.851 34 H 0.065 0.935 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.380 0.620 39 H 0.030 0.970 40 H 0.024 0.976 41 H 0.376 0.624 42 H 0.253 0.747 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.057 0.943 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.912 18.822 16.654 25.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.199 5.199 3 C 0.049 3.951 4 C -0.262 4.262 5 C 0.039 3.961 6 C -0.330 4.330 7 C 0.369 3.631 8 O -0.470 6.470 9 N -0.323 5.323 10 C -0.002 4.002 11 C -0.146 4.146 12 C 0.095 3.905 13 O -0.371 6.371 14 C 0.004 3.996 15 N -0.382 5.382 16 C -0.383 4.383 17 H 0.090 0.910 18 C -0.260 4.260 19 N -0.615 5.615 20 Si 0.802 3.198 21 H -0.207 1.207 22 H -0.219 1.219 23 H -0.204 1.204 24 C -0.189 4.189 25 C 0.019 3.981 26 C 0.312 3.688 27 O -0.460 6.460 28 H 0.109 0.891 29 H 0.151 0.849 30 H 0.091 0.909 31 H 0.244 0.756 32 H 0.213 0.787 33 H 0.166 0.834 34 H 0.084 0.916 35 H 0.109 0.891 36 H 0.106 0.894 37 H 0.113 0.887 38 H 0.229 0.771 39 H 0.048 0.952 40 H 0.042 0.958 41 H 0.209 0.791 42 H 0.061 0.939 43 H 0.086 0.914 44 H 0.089 0.911 45 H 0.075 0.925 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.470 17.886 17.317 25.017 hybrid contribution -0.878 -0.584 -1.449 1.792 sum 1.592 17.302 15.868 23.530 Atomic orbital electron populations 1.22524 0.74767 1.06455 1.05289 1.45563 1.10957 1.06634 1.56728 1.23237 0.94582 0.89979 0.87350 1.21145 0.92749 0.99685 1.12660 1.22202 1.01851 0.90414 0.81588 1.20704 0.93126 0.95219 1.23981 1.17980 0.82420 0.83523 0.79208 1.90714 1.33066 1.82164 1.41010 1.48019 1.27909 1.17307 1.39068 1.21488 0.96056 0.85823 0.96841 1.21823 0.95221 1.04046 0.93536 1.21281 0.90539 0.86547 0.92112 1.86378 1.33608 1.56219 1.60855 1.21428 0.90109 0.98143 0.89954 1.42451 1.06579 1.85267 1.03915 1.19555 0.94523 1.39360 0.84838 0.90954 1.25503 0.95218 1.02978 1.02310 1.69780 0.99175 1.56701 1.35845 0.85232 0.76302 0.78066 0.80251 1.20688 1.21943 1.20379 1.22524 1.01548 0.97945 0.96886 1.21844 0.85889 1.03067 0.87288 1.16904 0.88252 0.83795 0.79833 1.90989 1.70212 1.30663 1.54159 0.89100 0.84913 0.90948 0.75581 0.78710 0.83366 0.91648 0.89088 0.89438 0.88731 0.77138 0.95222 0.95794 0.79062 0.93864 0.91415 0.91100 0.92514 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.47 10.35 127.77 1.32 1.79 16 2 N -0.49 -7.27 2.98 -673.17 -2.00 -9.27 16 3 C 0.18 1.00 10.25 83.56 0.86 1.86 16 4 C -0.24 -1.82 9.99 21.99 0.22 -1.60 16 5 C 0.06 1.10 9.83 22.83 0.22 1.33 16 6 C -0.32 -8.77 5.18 -19.79 -0.10 -8.87 16 7 C 0.58 19.96 7.05 86.56 0.61 20.57 16 8 O -0.59 -22.78 16.45 -4.20 -0.07 -22.85 16 9 N -0.59 -20.30 2.96 -823.18 -2.44 -22.74 16 10 C 0.12 3.88 6.18 86.36 0.53 4.41 16 11 C -0.11 -3.30 5.11 30.67 0.16 -3.14 16 12 C 0.14 4.85 0.71 -10.76 -0.01 4.84 16 13 O -0.56 -21.23 11.70 -148.98 -1.74 -22.97 16 14 C 0.13 5.41 5.43 86.38 0.47 5.88 16 15 N -0.74 -37.05 5.07 -343.43 -1.74 -38.79 16 16 C -0.25 -14.00 9.99 84.03 0.84 -13.16 16 17 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 18 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 19 N -0.96 -57.71 13.06 21.65 0.28 -57.42 16 20 Si 0.97 45.70 29.55 68.60 2.03 47.73 16 21 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 22 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 24 C -0.15 -5.32 4.88 30.67 0.15 -5.17 16 25 C 0.14 4.89 4.20 86.36 0.36 5.25 16 26 C 0.51 13.40 5.89 85.17 0.50 13.90 16 27 O -0.57 -19.54 12.51 -4.94 -0.06 -19.60 16 28 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.13 0.07 8.00 -2.39 -0.02 0.05 16 30 H 0.07 1.15 7.38 -2.39 -0.02 1.13 16 31 H 0.23 -1.41 8.02 -2.91 -0.02 -1.44 16 32 H 0.20 -0.12 8.06 -2.91 -0.02 -0.14 16 33 H 0.15 2.33 8.06 -2.91 -0.02 2.30 16 34 H 0.07 2.22 7.81 -2.39 -0.02 2.20 16 35 H 0.09 2.87 7.03 -2.39 -0.02 2.85 16 36 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 37 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.38 14.46 8.19 -74.06 -0.61 13.85 16 39 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.38 19.59 5.55 -92.71 -0.51 19.08 16 42 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 43 H 0.07 2.69 6.53 -2.39 -0.02 2.67 16 44 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 45 H 0.06 2.19 7.51 -2.39 -0.02 2.17 16 46 H 0.09 3.11 3.94 -2.40 -0.01 3.10 16 Total: -1.00 -83.21 367.19 0.76 -82.45 By element: Atomic # 1 Polarization: 39.03 SS G_CDS: -0.10 Total: 38.93 kcal Atomic # 6 Polarization: 17.93 SS G_CDS: 6.60 Total: 24.53 kcal Atomic # 7 Polarization: -122.32 SS G_CDS: -5.90 Total: -128.22 kcal Atomic # 8 Polarization: -63.54 SS G_CDS: -1.87 Total: -65.42 kcal Atomic # 14 Polarization: 45.70 SS G_CDS: 2.03 Total: 47.73 kcal Total: -83.21 0.76 -82.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328207463.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.994 kcal (2) G-P(sol) polarization free energy of solvation -83.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds