Wall clock time and date at job start Tue Mar 31 2020 18:36:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36010 * 117.00433 * 2 1 4 4 C 1.35859 * 120.30936 * 0.02562 * 3 2 1 5 5 N 1.35441 * 120.77303 * 180.02562 * 4 3 2 6 6 H 0.97000 * 119.29045 * 179.97438 * 5 4 3 7 7 C 1.36424 * 121.41260 * 359.95129 * 5 4 3 8 8 C 1.48070 * 119.72127 * 180.02562 * 7 5 4 9 9 O 1.21512 * 120.00263 * 189.44324 * 8 7 5 10 10 N 1.34774 * 119.99667 * 9.44539 * 8 7 5 11 11 C 1.47422 * 125.65256 * 7.27939 * 10 8 7 12 12 C 1.54906 * 104.83465 * 155.92019 * 11 10 8 13 13 C 1.55161 * 101.58420 * 37.01080 * 12 11 10 14 14 C 1.47030 * 125.64746 * 187.33714 * 10 8 7 15 15 H 1.08997 * 110.00781 * 300.50186 * 14 10 8 16 16 C 1.53005 * 109.88155 * 61.59466 * 14 10 8 17 17 N 1.46501 * 109.46963 * 304.20039 * 16 14 10 18 18 C 1.46500 * 120.00195 * 277.02283 * 17 16 14 19 19 C 1.36935 * 119.99823 * 97.01663 * 17 16 14 20 20 H 1.07999 * 120.00377 * 335.04035 * 19 17 16 21 21 C 1.38816 * 120.00122 * 155.03274 * 19 17 16 22 22 N 1.31620 * 120.00184 * 162.08493 * 21 19 17 23 23 Si 1.86799 * 119.99894 * 342.36228 * 21 19 17 24 24 H 1.48507 * 109.47090 * 88.12880 * 23 21 19 25 25 H 1.48498 * 109.47421 * 208.12915 * 23 21 19 26 26 H 1.48504 * 109.47173 * 328.13191 * 23 21 19 27 27 C 1.36180 * 120.56097 * 0.29816 * 7 5 4 28 28 C 1.41563 * 120.31678 * 180.02562 * 3 2 1 29 29 O 1.22264 * 120.65600 * 0.02562 * 28 3 2 30 30 H 1.08995 * 109.47006 * 59.99476 * 1 2 3 31 31 H 1.08997 * 109.46960 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46463 * 299.99261 * 1 2 3 33 33 H 1.07997 * 119.61331 * 0.02562 * 4 3 2 34 34 H 1.08996 * 110.36586 * 37.07837 * 11 10 8 35 35 H 1.08995 * 110.46069 * 274.80799 * 11 10 8 36 36 H 1.09002 * 111.00488 * 278.93808 * 12 11 10 37 37 H 1.09005 * 111.03833 * 155.09609 * 12 11 10 38 38 H 1.08998 * 110.72081 * 206.13978 * 13 12 11 39 39 H 1.08999 * 110.71866 * 82.85738 * 13 12 11 40 40 H 1.09005 * 109.46746 * 184.20683 * 16 14 10 41 41 H 1.08996 * 109.47379 * 64.20446 * 16 14 10 42 42 H 1.09004 * 109.46742 * 268.15341 * 18 17 16 43 43 H 1.08997 * 109.47054 * 28.15561 * 18 17 16 44 44 H 1.09002 * 109.47008 * 148.15591 * 18 17 16 45 45 H 0.97000 * 120.00292 * 180.02562 * 22 21 19 46 46 H 1.07997 * 120.40651 * 179.73025 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.3129 2.3553 0.0005 5 7 1.9181 3.5669 0.0000 6 1 1.3733 4.3695 0.0000 7 6 3.2774 3.6828 -0.0001 8 6 3.8996 5.0264 -0.0001 9 8 5.0969 5.1416 -0.1728 10 7 3.1380 6.1217 0.1916 11 6 1.7108 6.1220 0.5610 12 6 1.4786 7.4921 1.2453 13 6 2.3895 8.4211 0.3998 14 6 3.5926 7.5142 0.0656 15 1 4.4065 7.7055 0.7649 16 6 4.0632 7.7806 -1.3657 17 7 5.1026 6.8131 -1.7260 18 6 6.4929 7.0500 -1.3296 19 6 4.7746 5.6874 -2.4332 20 1 3.7701 5.2936 -2.3863 21 6 5.7333 5.0522 -3.2107 22 7 5.5461 3.8092 -3.6011 23 14 7.2926 5.9589 -3.6963 24 1 8.3229 5.7708 -2.6434 25 1 7.7976 5.4204 -4.9848 26 1 6.9971 7.4065 -3.8466 27 6 4.0669 2.5732 -0.0057 28 6 3.4599 1.2936 -0.0005 29 8 4.1430 0.2796 -0.0015 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 0.2345 2.2974 0.0014 34 1 1.4988 5.3098 1.2563 35 1 1.0871 6.0315 -0.3283 36 1 1.8024 7.4691 2.2858 37 1 0.4342 7.7951 1.1699 38 1 2.7079 9.2845 0.9839 39 1 1.8797 8.7365 -0.5105 40 1 4.4677 8.7905 -1.4331 41 1 3.2205 7.6803 -2.0498 42 1 7.0115 7.5850 -2.1253 43 1 6.5141 7.6460 -0.4172 44 1 6.9876 6.0952 -1.1514 45 1 6.2162 3.3653 -4.1441 46 1 5.1427 2.6679 -0.0101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328750962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:12 Heat of formation + Delta-G solvation = 23.159106 kcal Electronic energy + Delta-G solvation = -31395.010563 eV Core-core repulsion = 27289.561083 eV Total energy + Delta-G solvation = -4105.449480 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.13852 -39.73325 -37.96820 -37.15737 -36.93964 -35.37789 -31.88705 -31.51488 -31.02493 -30.26065 -29.62011 -27.50032 -26.22872 -25.53382 -24.42435 -22.82293 -22.51217 -21.37346 -20.84800 -19.47917 -18.35305 -17.67486 -17.11951 -16.79543 -16.12366 -15.83844 -15.80048 -15.38480 -15.18031 -14.64042 -14.33177 -14.19515 -13.98407 -13.72201 -13.62758 -13.33283 -13.09744 -12.82076 -12.65106 -12.60501 -12.29215 -12.20826 -12.01559 -11.73128 -11.54683 -11.49973 -11.26762 -11.19683 -10.90796 -10.73897 -10.38038 -10.01516 -9.85435 -9.47835 -9.24508 -8.97606 -8.90698 -8.68739 -8.04583 -7.26426 -6.65633 -5.80761 -3.11730 1.33698 1.55230 2.95338 3.24732 3.45440 3.48868 3.56772 3.60612 3.66643 4.26063 4.39393 4.48904 4.57713 4.67477 4.79222 4.87809 4.96394 5.07075 5.10548 5.14229 5.21746 5.24821 5.41950 5.45538 5.50367 5.56724 5.67920 5.75674 5.82438 5.92311 5.97776 6.04933 6.22602 6.25935 6.42062 6.56967 6.64341 6.70719 6.74846 7.03522 7.07984 7.13261 7.45196 7.97543 8.02815 8.36811 8.51000 8.87574 9.04282 9.85789 10.19044 11.34155 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010883 B = 0.005596 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.158904 B = 5002.027080 C = 6944.840845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.291 6.291 3 C -0.042 4.042 4 C 0.024 3.976 5 N -0.577 5.577 6 H 0.418 0.582 7 C 0.144 3.856 8 C 0.557 3.443 9 O -0.412 6.412 10 N -0.616 5.616 11 C 0.078 3.922 12 C -0.126 4.126 13 C -0.127 4.127 14 C 0.119 3.881 15 H 0.067 0.933 16 C 0.141 3.859 17 N -0.598 5.598 18 C 0.113 3.887 19 C -0.235 4.235 20 H 0.073 0.927 21 C 0.029 3.971 22 N -0.899 5.899 23 Si 0.899 3.101 24 H -0.290 1.290 25 H -0.312 1.312 26 H -0.280 1.280 27 C -0.203 4.203 28 C 0.404 3.596 29 O -0.509 6.509 30 H 0.052 0.948 31 H 0.098 0.902 32 H 0.050 0.950 33 H 0.161 0.839 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.044 0.956 41 H 0.058 0.942 42 H 0.004 0.996 43 H 0.027 0.973 44 H 0.062 0.938 45 H 0.261 0.739 46 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.933 6.955 11.374 20.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.203 6.203 3 C -0.093 4.093 4 C -0.104 4.104 5 N -0.198 5.198 6 H 0.263 0.737 7 C 0.033 3.967 8 C 0.342 3.658 9 O -0.277 6.277 10 N -0.356 5.356 11 C -0.046 4.046 12 C -0.164 4.164 13 C -0.165 4.165 14 C 0.013 3.987 15 H 0.085 0.915 16 C 0.012 3.988 17 N -0.320 5.320 18 C -0.032 4.032 19 C -0.363 4.363 20 H 0.091 0.909 21 C -0.171 4.171 22 N -0.541 5.541 23 Si 0.732 3.268 24 H -0.218 1.218 25 H -0.241 1.241 26 H -0.206 1.206 27 C -0.229 4.229 28 C 0.295 3.705 29 O -0.394 6.394 30 H 0.070 0.930 31 H 0.116 0.884 32 H 0.068 0.932 33 H 0.178 0.822 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.021 0.979 43 H 0.045 0.955 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -14.599 6.008 11.133 19.317 hybrid contribution 0.037 0.903 -0.582 1.075 sum -14.562 6.911 10.551 19.265 Atomic orbital electron populations 1.23048 0.79973 1.03930 1.00601 1.86258 1.19700 1.24861 1.89475 1.20443 0.94939 0.84296 1.09643 1.21533 0.98201 0.84913 1.05732 1.41773 1.05942 1.08460 1.63666 0.73678 1.20501 0.82107 0.96319 0.97792 1.16933 0.86726 0.81136 0.80957 1.90883 1.13284 1.83629 1.39918 1.48116 1.09147 1.05937 1.72386 1.22450 0.84656 0.99010 0.98498 1.22695 1.00323 0.93815 0.99573 1.22675 0.95991 0.97684 1.00195 1.22436 0.95589 0.79832 1.00865 0.91492 1.21145 0.92768 0.92342 0.92503 1.43927 1.02414 1.22574 1.63090 1.21303 0.86480 0.99905 0.95488 1.18537 0.97691 1.00403 1.19661 0.90906 1.25099 0.97831 0.95994 0.98168 1.69816 1.35738 1.09864 1.38702 0.86882 0.84429 0.79221 0.76279 1.21757 1.24143 1.20620 1.22281 1.02212 0.90043 1.08337 1.16808 0.85837 0.89990 0.77909 1.90802 1.65847 1.37726 1.44998 0.92993 0.88360 0.93180 0.82215 0.90846 0.91610 0.90562 0.90080 0.90387 0.90429 0.93833 0.92398 0.97887 0.95480 0.91930 0.92903 0.81820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.19 16 2 O -0.29 -4.80 10.33 -35.60 -0.37 -5.17 16 3 C -0.04 -0.73 6.71 -39.17 -0.26 -0.99 16 4 C 0.02 0.31 10.22 -16.81 -0.17 0.14 16 5 N -0.58 -7.93 4.59 -9.58 -0.04 -7.97 16 6 H 0.42 4.41 3.88 -40.82 -0.16 4.25 16 7 C 0.14 2.66 6.64 -82.53 -0.55 2.12 16 8 C 0.56 10.82 5.10 -12.23 -0.06 10.75 16 9 O -0.41 -9.70 10.57 5.35 0.06 -9.65 16 10 N -0.62 -9.27 3.06 -164.04 -0.50 -9.77 16 11 C 0.08 0.76 5.00 -2.53 -0.01 0.75 16 12 C -0.13 -0.94 7.08 -24.58 -0.17 -1.12 16 13 C -0.13 -1.17 6.48 -24.89 -0.16 -1.33 16 14 C 0.12 1.69 3.31 -66.95 -0.22 1.46 16 15 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 16 C 0.14 2.48 5.30 -4.04 -0.02 2.46 16 17 N -0.60 -13.66 1.51 -181.11 -0.27 -13.94 16 18 C 0.11 2.57 7.23 59.85 0.43 3.00 16 19 C -0.24 -6.27 6.38 -15.06 -0.10 -6.37 16 20 H 0.07 2.07 7.09 -52.49 -0.37 1.70 16 21 C 0.03 0.83 5.30 -17.43 -0.09 0.74 16 22 N -0.90 -27.92 13.97 55.49 0.78 -27.14 16 23 Si 0.90 23.74 23.94 -169.99 -4.07 19.67 16 24 H -0.29 -7.62 6.66 56.52 0.38 -7.25 16 25 H -0.31 -8.46 7.11 56.52 0.40 -8.06 16 26 H -0.28 -7.19 6.32 56.52 0.36 -6.83 16 27 C -0.20 -4.35 9.53 -39.03 -0.37 -4.73 16 28 C 0.40 8.83 6.78 -37.02 -0.25 8.58 16 29 O -0.51 -12.97 17.71 -11.15 -0.20 -13.17 16 30 H 0.05 0.43 7.66 -51.93 -0.40 0.04 16 31 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 33 H 0.16 1.31 6.21 -52.49 -0.33 0.98 16 34 H 0.07 0.62 6.47 -51.93 -0.34 0.28 16 35 H 0.07 0.58 7.41 -51.93 -0.39 0.19 16 36 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.08 0.68 7.78 -51.93 -0.40 0.28 16 40 H 0.04 0.70 8.12 -51.93 -0.42 0.28 16 41 H 0.06 1.03 7.88 -51.93 -0.41 0.62 16 42 H 0.00 0.08 4.75 -51.93 -0.25 -0.16 16 43 H 0.03 0.53 8.06 -51.93 -0.42 0.11 16 44 H 0.06 1.60 5.50 -51.93 -0.29 1.31 16 45 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 46 H 0.16 3.88 7.60 -52.49 -0.40 3.48 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -38.50 351.73 -6.62 -45.12 By element: Atomic # 1 Polarization: 6.33 SS G_CDS: -6.28 Total: 0.06 kcal Atomic # 6 Polarization: 17.68 SS G_CDS: -1.02 Total: 16.66 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -0.05 Total: -58.82 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.51 Total: -27.98 kcal Atomic # 14 Polarization: 23.74 SS G_CDS: -4.07 Total: 19.67 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -38.50 -6.62 -45.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328750962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.282 kcal (2) G-P(sol) polarization free energy of solvation -38.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds