Wall clock time and date at job start Tue Mar 31 2020 18:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.36010 * 117.00433 * 2 1 4 4 C 1.35859 * 120.30936 * 0.02562 * 3 2 1 5 5 N 1.35441 * 120.77303 * 180.02562 * 4 3 2 6 6 H 0.97000 * 119.29045 * 179.97438 * 5 4 3 7 7 C 1.36424 * 121.41260 * 359.95129 * 5 4 3 8 8 C 1.48070 * 119.72127 * 180.02562 * 7 5 4 9 9 O 1.21512 * 120.00263 * 189.44324 * 8 7 5 10 10 N 1.34774 * 119.99667 * 9.44539 * 8 7 5 11 11 C 1.47422 * 125.65256 * 7.27939 * 10 8 7 12 12 C 1.54906 * 104.83465 * 155.92019 * 11 10 8 13 13 C 1.55161 * 101.58420 * 37.01080 * 12 11 10 14 14 C 1.47030 * 125.64746 * 187.33714 * 10 8 7 15 15 H 1.08997 * 110.00781 * 300.50186 * 14 10 8 16 16 C 1.53005 * 109.88155 * 61.59466 * 14 10 8 17 17 N 1.46501 * 109.46963 * 304.20039 * 16 14 10 18 18 C 1.46500 * 120.00195 * 277.02283 * 17 16 14 19 19 C 1.36935 * 119.99823 * 97.01663 * 17 16 14 20 20 H 1.07999 * 120.00377 * 335.04035 * 19 17 16 21 21 C 1.38816 * 120.00122 * 155.03274 * 19 17 16 22 22 N 1.31620 * 120.00184 * 162.08493 * 21 19 17 23 23 Si 1.86799 * 119.99894 * 342.36228 * 21 19 17 24 24 H 1.48507 * 109.47090 * 88.12880 * 23 21 19 25 25 H 1.48498 * 109.47421 * 208.12915 * 23 21 19 26 26 H 1.48504 * 109.47173 * 328.13191 * 23 21 19 27 27 C 1.36180 * 120.56097 * 0.29816 * 7 5 4 28 28 C 1.41563 * 120.31678 * 180.02562 * 3 2 1 29 29 O 1.22264 * 120.65600 * 0.02562 * 28 3 2 30 30 H 1.08995 * 109.47006 * 59.99476 * 1 2 3 31 31 H 1.08997 * 109.46960 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46463 * 299.99261 * 1 2 3 33 33 H 1.07997 * 119.61331 * 0.02562 * 4 3 2 34 34 H 1.08996 * 110.36586 * 37.07837 * 11 10 8 35 35 H 1.08995 * 110.46069 * 274.80799 * 11 10 8 36 36 H 1.09002 * 111.00488 * 278.93808 * 12 11 10 37 37 H 1.09005 * 111.03833 * 155.09609 * 12 11 10 38 38 H 1.08998 * 110.72081 * 206.13978 * 13 12 11 39 39 H 1.08999 * 110.71866 * 82.85738 * 13 12 11 40 40 H 1.09005 * 109.46746 * 184.20683 * 16 14 10 41 41 H 1.08996 * 109.47379 * 64.20446 * 16 14 10 42 42 H 1.09004 * 109.46742 * 268.15341 * 18 17 16 43 43 H 1.08997 * 109.47054 * 28.15561 * 18 17 16 44 44 H 1.09002 * 109.47008 * 148.15591 * 18 17 16 45 45 H 0.97000 * 120.00292 * 180.02562 * 22 21 19 46 46 H 1.07997 * 120.40651 * 179.73025 * 27 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0466 1.2118 0.0000 4 6 1.3129 2.3553 0.0005 5 7 1.9181 3.5669 0.0000 6 1 1.3733 4.3695 0.0000 7 6 3.2774 3.6828 -0.0001 8 6 3.8996 5.0264 -0.0001 9 8 5.0969 5.1416 -0.1728 10 7 3.1380 6.1217 0.1916 11 6 1.7108 6.1220 0.5610 12 6 1.4786 7.4921 1.2453 13 6 2.3895 8.4211 0.3998 14 6 3.5926 7.5142 0.0656 15 1 4.4065 7.7055 0.7649 16 6 4.0632 7.7806 -1.3657 17 7 5.1026 6.8131 -1.7260 18 6 6.4929 7.0500 -1.3296 19 6 4.7746 5.6874 -2.4332 20 1 3.7701 5.2936 -2.3863 21 6 5.7333 5.0522 -3.2107 22 7 5.5461 3.8092 -3.6011 23 14 7.2926 5.9589 -3.6963 24 1 8.3229 5.7708 -2.6434 25 1 7.7976 5.4204 -4.9848 26 1 6.9971 7.4065 -3.8466 27 6 4.0669 2.5732 -0.0057 28 6 3.4599 1.2936 -0.0005 29 8 4.1430 0.2796 -0.0015 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8901 33 1 0.2345 2.2974 0.0014 34 1 1.4988 5.3098 1.2563 35 1 1.0871 6.0315 -0.3283 36 1 1.8024 7.4691 2.2858 37 1 0.4342 7.7951 1.1699 38 1 2.7079 9.2845 0.9839 39 1 1.8797 8.7365 -0.5105 40 1 4.4677 8.7905 -1.4331 41 1 3.2205 7.6803 -2.0498 42 1 7.0115 7.5850 -2.1253 43 1 6.5141 7.6460 -0.4172 44 1 6.9876 6.0952 -1.1514 45 1 6.2162 3.3653 -4.1441 46 1 5.1427 2.6679 -0.0101 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328750962.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:11 Heat of formation + Delta-G solvation = -7.042157 kcal Electronic energy + Delta-G solvation = -31396.320188 eV Core-core repulsion = 27289.561083 eV Total energy + Delta-G solvation = -4106.759105 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.54098 -41.03477 -39.17285 -38.73830 -38.30437 -37.13218 -33.68208 -32.89305 -32.58577 -31.51410 -30.93897 -28.37887 -27.98233 -27.02500 -25.90480 -24.16138 -23.86216 -22.58112 -22.25788 -20.76599 -19.61155 -18.99961 -18.98851 -18.11627 -17.40984 -17.22204 -17.19414 -16.93043 -16.74695 -16.06061 -15.80241 -15.51950 -15.40620 -15.12914 -14.96428 -14.72291 -14.37397 -14.28523 -14.21620 -13.95613 -13.82397 -13.65852 -13.54255 -13.22721 -13.09351 -12.36442 -12.32234 -12.21152 -12.10295 -11.98254 -11.90717 -11.76489 -11.49359 -11.41324 -10.96441 -10.68274 -10.56430 -10.30158 -9.62890 -8.70530 -8.48695 -8.00354 -5.25711 -0.24321 0.20533 1.34737 1.36904 1.46274 1.58519 1.98449 2.12532 2.38397 2.52813 2.74318 3.21191 3.35639 3.51796 3.59469 3.70538 3.75875 3.93449 4.04248 4.13209 4.24341 4.37399 4.40064 4.47126 4.49769 4.51593 4.61739 4.67720 4.73365 4.76912 4.83032 4.85427 5.02833 5.07646 5.10029 5.12467 5.21894 5.26874 5.46187 5.51919 5.69064 5.90225 5.93493 6.18434 6.33985 6.62183 6.98595 7.05970 7.38693 7.80117 8.16403 9.18436 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010883 B = 0.005596 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2572.158904 B = 5002.027080 C = 6944.840845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.326 6.326 3 C -0.063 4.063 4 C 0.068 3.932 5 N -0.543 5.543 6 H 0.439 0.561 7 C 0.160 3.840 8 C 0.557 3.443 9 O -0.472 6.472 10 N -0.613 5.613 11 C 0.058 3.942 12 C -0.110 4.110 13 C -0.115 4.115 14 C 0.116 3.884 15 H 0.055 0.945 16 C 0.134 3.866 17 N -0.609 5.609 18 C 0.120 3.880 19 C -0.185 4.185 20 H 0.053 0.947 21 C -0.040 4.040 22 N -0.955 5.955 23 Si 0.945 3.055 24 H -0.299 1.299 25 H -0.328 1.328 26 H -0.262 1.262 27 C -0.240 4.240 28 C 0.377 3.623 29 O -0.581 6.581 30 H 0.072 0.928 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.233 0.767 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.120 0.880 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.000 1.000 43 H 0.057 0.943 44 H 0.025 0.975 45 H 0.248 0.752 46 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.745 10.999 13.297 27.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.239 6.239 3 C -0.113 4.113 4 C -0.061 4.061 5 N -0.165 5.165 6 H 0.290 0.710 7 C 0.045 3.955 8 C 0.342 3.658 9 O -0.341 6.341 10 N -0.350 5.350 11 C -0.064 4.064 12 C -0.148 4.148 13 C -0.154 4.154 14 C 0.011 3.989 15 H 0.074 0.926 16 C 0.007 3.993 17 N -0.332 5.332 18 C -0.024 4.024 19 C -0.315 4.315 20 H 0.071 0.929 21 C -0.233 4.233 22 N -0.603 5.603 23 Si 0.779 3.221 24 H -0.227 1.227 25 H -0.258 1.258 26 H -0.187 1.187 27 C -0.267 4.267 28 C 0.274 3.726 29 O -0.473 6.473 30 H 0.091 0.909 31 H 0.131 0.869 32 H 0.102 0.898 33 H 0.249 0.751 34 H 0.110 0.890 35 H 0.108 0.892 36 H 0.100 0.900 37 H 0.138 0.862 38 H 0.118 0.882 39 H 0.109 0.891 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.018 0.982 43 H 0.076 0.924 44 H 0.044 0.956 45 H 0.057 0.943 46 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -20.544 10.217 13.106 26.423 hybrid contribution 1.548 -0.189 -0.945 1.823 sum -18.997 10.028 12.160 24.684 Atomic orbital electron populations 1.23528 0.76234 1.06086 1.03053 1.86215 1.23514 1.24427 1.89748 1.19964 0.93050 0.86570 1.11738 1.22368 1.00647 0.82581 1.00531 1.41980 1.04198 1.10226 1.60075 0.71001 1.20339 0.83983 0.95223 0.95954 1.17216 0.86602 0.82317 0.79680 1.90890 1.15592 1.84473 1.43168 1.48207 1.11481 1.05178 1.70177 1.22973 0.81153 1.01881 1.00376 1.22718 1.02133 0.90903 0.99046 1.22672 0.93715 0.97377 1.01590 1.22431 0.98136 0.80285 0.98009 0.92648 1.21511 0.91300 0.92111 0.94329 1.44062 1.03665 1.22721 1.62777 1.21135 0.86324 0.98349 0.96636 1.18388 0.96097 1.00336 1.16651 0.92910 1.25604 1.00524 0.96681 1.00529 1.69963 1.36665 1.11612 1.42070 0.86117 0.82098 0.79013 0.74837 1.22672 1.25835 1.18726 1.21971 1.00916 0.91912 1.11889 1.17311 0.88516 0.89081 0.77711 1.90738 1.67624 1.39195 1.49711 0.90925 0.86864 0.89840 0.75126 0.88963 0.89163 0.90003 0.86160 0.88195 0.89111 0.91476 0.92227 0.98215 0.92395 0.95647 0.94340 0.86264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.07 9.81 113.37 1.11 1.19 16 2 O -0.33 -10.45 10.33 -78.53 -0.81 -11.27 16 3 C -0.06 -2.17 6.71 22.54 0.15 -2.01 16 4 C 0.07 1.46 10.22 83.58 0.85 2.32 16 5 N -0.54 -12.90 4.59 -184.21 -0.85 -13.75 16 6 H 0.44 6.62 3.88 -92.71 -0.36 6.26 16 7 C 0.16 5.94 6.64 40.56 0.27 6.21 16 8 C 0.56 21.60 5.10 86.85 0.44 22.04 16 9 O -0.47 -23.31 10.57 -3.75 -0.04 -23.35 16 10 N -0.61 -16.49 3.06 -791.19 -2.42 -18.92 16 11 C 0.06 0.77 5.00 86.85 0.43 1.20 16 12 C -0.11 -0.83 7.08 31.99 0.23 -0.60 16 13 C -0.12 -1.38 6.48 31.78 0.21 -1.17 16 14 C 0.12 2.86 3.31 45.34 0.15 3.01 16 15 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 16 C 0.13 4.28 5.30 86.38 0.46 4.74 16 17 N -0.61 -27.54 1.51 -726.92 -1.10 -28.64 16 18 C 0.12 5.50 7.23 127.77 0.92 6.42 16 19 C -0.18 -10.08 6.38 84.03 0.54 -9.54 16 20 H 0.05 3.05 7.09 -2.91 -0.02 3.03 16 21 C -0.04 -2.45 5.30 84.86 0.45 -2.00 16 22 N -0.95 -63.71 13.97 21.65 0.30 -63.41 16 23 Si 0.95 51.47 23.94 68.60 1.64 53.11 16 24 H -0.30 -16.38 6.66 99.48 0.66 -15.72 16 25 H -0.33 -18.43 7.11 99.48 0.71 -17.73 16 26 H -0.26 -13.22 6.32 99.48 0.63 -12.59 16 27 C -0.24 -11.30 9.53 22.63 0.22 -11.08 16 28 C 0.38 17.86 6.78 23.93 0.16 18.02 16 29 O -0.58 -33.06 17.71 8.95 0.16 -32.90 16 30 H 0.07 0.82 7.66 -2.39 -0.02 0.80 16 31 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 0.73 7.66 -2.39 -0.02 0.71 16 33 H 0.23 1.83 6.21 -2.91 -0.02 1.81 16 34 H 0.09 0.92 6.47 -2.39 -0.02 0.91 16 35 H 0.09 0.89 7.41 -2.39 -0.02 0.87 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.12 0.15 8.14 -2.38 -0.02 0.13 16 38 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.09 0.94 7.78 -2.39 -0.02 0.92 16 40 H 0.07 1.87 8.12 -2.38 -0.02 1.85 16 41 H 0.06 1.90 7.88 -2.39 -0.02 1.88 16 42 H 0.00 0.01 4.75 -2.38 -0.01 0.00 16 43 H 0.06 2.23 8.06 -2.39 -0.02 2.21 16 44 H 0.02 1.35 5.50 -2.39 -0.01 1.33 16 45 H 0.25 16.40 8.31 -92.71 -0.77 15.63 16 46 H 0.12 6.56 7.60 -2.91 -0.02 6.54 16 Total: -1.00 -101.19 351.73 4.02 -97.17 By element: Atomic # 1 Polarization: 2.66 SS G_CDS: 0.54 Total: 3.20 kcal Atomic # 6 Polarization: 32.15 SS G_CDS: 6.59 Total: 38.74 kcal Atomic # 7 Polarization: -120.65 SS G_CDS: -4.07 Total: -124.71 kcal Atomic # 8 Polarization: -66.82 SS G_CDS: -0.69 Total: -67.51 kcal Atomic # 14 Polarization: 51.47 SS G_CDS: 1.64 Total: 53.11 kcal Total: -101.19 4.02 -97.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328750962.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.127 kcal (2) G-P(sol) polarization free energy of solvation -101.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds