Wall clock time and date at job start Tue Mar 31 2020 19:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35525 * 116.99689 * 2 1 4 4 C 1.38817 * 120.89993 * 0.02562 * 3 2 1 5 5 C 1.38707 * 119.20119 * 179.97438 * 4 3 2 6 6 O 1.35523 * 119.47075 * 179.97438 * 5 4 3 7 7 N 1.32589 * 121.05285 * 0.02562 * 5 4 3 8 8 C 1.31609 * 121.97819 * 359.70116 * 7 5 4 9 9 C 1.39540 * 120.66827 * 0.58790 * 8 7 5 10 10 C 1.47339 * 120.55658 * 179.70435 * 9 8 7 11 11 O 1.21616 * 120.00401 * 179.71868 * 10 9 8 12 12 N 1.34783 * 120.00266 * 359.72166 * 10 9 8 13 13 C 1.46497 * 120.00200 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.01646 * 326.39023 * 13 12 10 15 15 C 1.53882 * 110.03135 * 87.83540 * 13 12 10 16 16 C 1.54267 * 106.59905 * 119.28141 * 15 13 12 17 17 C 1.54889 * 104.19467 * 23.60979 * 16 15 13 18 18 H 1.08999 * 110.91491 * 80.44193 * 17 16 15 19 19 C 1.53001 * 110.75493 * 203.73936 * 17 16 15 20 20 N 1.46490 * 109.47264 * 288.32759 * 19 17 16 21 21 C 1.36935 * 120.00121 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00139 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00401 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99569 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46685 * 269.99637 * 25 23 21 27 27 H 1.48494 * 109.47357 * 29.99716 * 25 23 21 28 28 H 1.48502 * 109.47120 * 150.00435 * 25 23 21 29 29 C 1.54271 * 110.02980 * 204.99914 * 13 12 10 30 30 H 1.09007 * 109.47346 * 60.00179 * 1 2 3 31 31 H 1.09006 * 109.47295 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47468 * 300.00273 * 1 2 3 33 33 H 1.08004 * 120.39765 * 359.95277 * 4 3 2 34 34 H 0.96699 * 114.00007 * 90.00694 * 6 5 4 35 35 H 1.08001 * 119.66685 * 180.29231 * 8 7 5 36 36 H 0.97002 * 119.99691 * 0.02562 * 12 10 9 37 37 H 1.09004 * 110.02606 * 238.56604 * 15 13 12 38 38 H 1.09002 * 110.03061 * 359.94537 * 15 13 12 39 39 H 1.08991 * 110.48623 * 264.93368 * 16 15 13 40 40 H 1.09000 * 110.48373 * 142.28652 * 16 15 13 41 41 H 1.09003 * 109.46836 * 168.32466 * 19 17 16 42 42 H 1.08999 * 109.47071 * 48.33505 * 19 17 16 43 43 H 0.97000 * 120.00577 * 0.02562 * 20 19 17 44 44 H 0.97001 * 119.99885 * 359.97438 * 24 23 21 45 45 H 1.08998 * 110.48457 * 98.42929 * 29 13 12 46 46 H 1.08997 * 110.48626 * 335.78641 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 1.3065 2.3835 0.0005 5 6 1.9725 3.6002 0.0011 6 8 1.2577 4.7516 0.0010 7 7 3.2972 3.6547 0.0005 8 6 4.0396 2.5680 0.0054 9 6 3.4500 1.3033 -0.0011 10 6 4.2834 0.0883 -0.0022 11 8 3.7590 -1.0090 -0.0027 12 7 5.6272 0.1927 -0.0027 13 6 6.4559 -1.0153 -0.0044 14 1 5.9638 -1.8061 0.5618 15 6 6.7084 -1.4793 -1.4497 16 6 8.2354 -1.4384 -1.6653 17 6 8.8238 -1.5536 -0.2372 18 1 8.8298 -2.5905 0.0987 19 6 10.2328 -0.9597 -0.1818 20 7 11.1631 -1.8429 -0.8891 21 6 12.4899 -1.5144 -0.9721 22 1 12.8505 -0.6044 -0.5158 23 6 13.3715 -2.3510 -1.6429 24 7 12.9319 -3.4598 -2.1995 25 14 15.1815 -1.9032 -1.7555 26 1 15.4151 -1.0895 -2.9757 27 1 15.5734 -1.1204 -0.5560 28 1 15.9950 -3.1437 -1.8246 29 6 7.8383 -0.7087 0.6078 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.2269 2.3513 0.0002 34 1 1.0500 5.0856 0.8844 35 1 5.1160 2.6559 0.0095 36 1 6.0456 1.0679 -0.0019 37 1 6.3392 -2.4959 -1.5853 38 1 6.2135 -0.8061 -2.1498 39 1 8.5306 -0.4951 -2.1245 40 1 8.5566 -2.2798 -2.2793 41 1 10.5448 -0.8610 0.8580 42 1 10.2322 0.0219 -0.6555 43 1 10.8393 -2.6600 -1.2994 44 1 11.9921 -3.6925 -2.1407 45 1 7.8698 -1.0175 1.6527 46 1 8.0695 0.3525 0.5156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332304183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:06 Heat of formation + Delta-G solvation = -67.651021 kcal Electronic energy + Delta-G solvation = -28175.410066 eV Core-core repulsion = 24066.022763 eV Total energy + Delta-G solvation = -4109.387302 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54111 -39.84226 -39.23051 -38.02000 -37.24368 -35.01383 -33.63082 -32.15954 -31.49158 -30.71946 -28.73000 -28.24144 -27.44443 -24.82356 -24.05696 -23.46455 -22.38906 -21.41320 -20.42873 -19.81733 -19.52981 -18.27515 -17.93444 -17.34768 -17.17747 -16.50650 -16.25842 -15.80585 -15.51017 -15.37272 -14.99475 -14.78751 -14.68917 -13.99712 -13.72271 -13.58061 -13.39274 -13.24715 -13.15345 -13.05779 -12.51159 -12.21904 -12.13080 -12.04777 -11.69205 -11.62012 -10.91323 -10.74352 -10.61875 -10.49551 -10.45880 -10.30934 -10.21768 -9.98078 -9.82172 -9.72046 -9.44072 -9.14122 -9.08842 -8.83559 -6.95353 -6.06931 -3.05867 0.04007 0.67234 2.44872 2.52298 2.89970 2.99415 3.33552 3.53559 3.58752 3.72704 3.92348 4.13693 4.25478 4.52199 4.59555 4.60037 4.65527 4.73793 4.76711 4.81584 4.89196 5.01710 5.03835 5.19525 5.42137 5.54587 5.59819 5.62871 5.67219 5.68743 5.80299 5.87859 6.01070 6.10566 6.13309 6.26954 6.40308 6.51501 6.54036 6.58120 6.75576 6.85256 6.87656 7.28233 7.32253 7.84674 8.05455 8.79867 9.28014 10.14347 10.29723 11.41954 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023906 B = 0.001939 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.951581 B =14437.131501 C =15279.423446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.269 6.269 3 C 0.238 3.762 4 C -0.290 4.290 5 C 0.370 3.630 6 O -0.479 6.479 7 N -0.528 5.528 8 C 0.198 3.802 9 C -0.234 4.234 10 C 0.565 3.435 11 O -0.518 6.518 12 N -0.719 5.719 13 C 0.143 3.857 14 H 0.092 0.908 15 C -0.133 4.133 16 C -0.112 4.112 17 C -0.098 4.098 18 H 0.078 0.922 19 C 0.167 3.833 20 N -0.743 5.743 21 C -0.330 4.330 22 H 0.064 0.936 23 C -0.048 4.048 24 N -0.945 5.945 25 Si 1.083 2.917 26 H -0.296 1.296 27 H -0.295 1.295 28 H -0.288 1.288 29 C -0.121 4.121 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.060 0.940 33 H 0.152 0.848 34 H 0.407 0.593 35 H 0.172 0.828 36 H 0.397 0.603 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.018 0.982 42 H 0.020 0.980 43 H 0.367 0.633 44 H 0.255 0.745 45 H 0.072 0.928 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.970 13.382 7.569 32.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.177 6.177 3 C 0.182 3.818 4 C -0.312 4.312 5 C 0.193 3.807 6 O -0.288 6.288 7 N -0.250 5.250 8 C 0.039 3.961 9 C -0.240 4.240 10 C 0.351 3.649 11 O -0.394 6.394 12 N -0.372 5.372 13 C 0.039 3.961 14 H 0.110 0.890 15 C -0.172 4.172 16 C -0.150 4.150 17 C -0.117 4.117 18 H 0.096 0.904 19 C 0.040 3.960 20 N -0.389 5.389 21 C -0.461 4.461 22 H 0.082 0.918 23 C -0.245 4.245 24 N -0.591 5.591 25 Si 0.914 3.086 26 H -0.224 1.224 27 H -0.222 1.222 28 H -0.214 1.214 29 C -0.159 4.159 30 H 0.080 0.920 31 H 0.128 0.872 32 H 0.079 0.921 33 H 0.170 0.830 34 H 0.266 0.734 35 H 0.189 0.811 36 H 0.232 0.768 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.036 0.964 42 H 0.037 0.963 43 H 0.200 0.800 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -27.386 12.841 6.498 30.937 hybrid contribution -2.177 0.313 0.906 2.378 sum -29.563 13.154 7.404 33.193 Atomic orbital electron populations 1.23309 0.77739 1.05099 1.01665 1.86401 1.21584 1.24477 1.85254 1.19147 0.90856 0.84945 0.86845 1.22118 1.02347 0.91620 1.15123 1.19000 0.86564 0.85043 0.90097 1.84709 1.71161 1.38619 1.34275 1.67214 1.06496 1.33194 1.18135 1.22686 0.99868 0.84881 0.88633 1.20552 0.91505 0.96085 1.15896 1.17630 0.82117 0.88081 0.77034 1.90845 1.72705 1.27219 1.48605 1.46128 1.05462 1.10093 1.75512 1.21722 0.90599 0.86723 0.97010 0.88989 1.22593 0.97206 1.01700 0.95711 1.22353 0.93058 1.02514 0.97062 1.22290 0.94969 0.99675 0.94735 0.90408 1.20567 0.86968 0.93281 0.95198 1.42358 1.05418 1.25106 1.65994 1.20064 0.85340 1.07344 1.33367 0.91816 1.25778 1.05294 0.95421 0.98013 1.70847 1.16389 1.24674 1.47211 0.83190 0.74767 0.75161 0.75468 1.22357 1.22196 1.21412 1.22626 0.92702 1.00949 0.99639 0.92049 0.87245 0.92119 0.83017 0.73351 0.81069 0.76783 0.91310 0.91662 0.91456 0.91353 0.96414 0.96268 0.79999 0.93378 0.90897 0.90826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.84 101.05 0.99 1.08 16 2 O -0.27 -2.78 8.71 -39.57 -0.34 -3.13 16 3 C 0.24 2.33 6.74 -38.36 -0.26 2.07 16 4 C -0.29 -2.18 9.02 -39.19 -0.35 -2.53 16 5 C 0.37 3.08 7.73 -17.05 -0.13 2.94 16 6 O -0.48 -3.10 13.54 -18.26 -0.25 -3.35 16 7 N -0.53 -5.03 10.36 -13.04 -0.14 -5.17 16 8 C 0.20 1.68 10.71 -17.16 -0.18 1.49 16 9 C -0.23 -2.38 5.90 -104.70 -0.62 -3.00 16 10 C 0.57 6.87 7.76 -12.56 -0.10 6.78 16 11 O -0.52 -8.19 14.93 -16.04 -0.24 -8.43 16 12 N -0.72 -7.34 4.93 -53.82 -0.27 -7.61 16 13 C 0.14 1.70 3.25 -66.81 -0.22 1.49 16 14 H 0.09 1.21 7.56 -51.93 -0.39 0.81 16 15 C -0.13 -1.73 6.59 -25.61 -0.17 -1.90 16 16 C -0.11 -1.68 6.20 -25.07 -0.16 -1.84 16 17 C -0.10 -1.51 2.91 -88.62 -0.26 -1.77 16 18 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 19 C 0.17 3.34 5.70 -4.05 -0.02 3.31 16 20 N -0.74 -18.88 5.52 -59.91 -0.33 -19.21 16 21 C -0.33 -9.46 9.99 -15.06 -0.15 -9.61 16 22 H 0.06 1.80 7.83 -52.49 -0.41 1.39 16 23 C -0.05 -1.41 5.50 -17.43 -0.10 -1.50 16 24 N -0.95 -29.62 13.70 55.49 0.76 -28.86 16 25 Si 1.08 26.28 29.92 -169.99 -5.09 21.20 16 26 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 27 H -0.30 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 29 C -0.12 -1.44 5.97 -25.07 -0.15 -1.59 16 30 H 0.06 0.25 7.71 -51.93 -0.40 -0.15 16 31 H 0.11 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.21 7.71 -51.93 -0.40 -0.19 16 33 H 0.15 0.74 6.45 -52.48 -0.34 0.40 16 34 H 0.41 0.48 9.06 45.56 0.41 0.90 16 35 H 0.17 0.95 6.41 -52.49 -0.34 0.61 16 36 H 0.40 2.96 6.41 -40.82 -0.26 2.69 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.84 7.92 -51.93 -0.41 0.43 16 39 H 0.07 1.04 7.93 -51.93 -0.41 0.63 16 40 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.02 0.39 7.99 -51.93 -0.41 -0.02 16 43 H 0.37 9.52 6.50 -40.82 -0.27 9.25 16 44 H 0.25 7.86 6.77 -40.82 -0.28 7.58 16 45 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.07 0.79 7.64 -51.93 -0.40 0.39 16 LS Contribution 379.49 15.07 5.72 5.72 Total: -1.00 -38.16 379.49 -7.67 -45.84 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -5.64 Total: 7.56 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -1.87 Total: -4.57 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.03 Total: -60.84 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.83 Total: -14.91 kcal Atomic # 14 Polarization: 26.28 SS G_CDS: -5.09 Total: 21.20 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.16 -7.67 -45.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332304183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.815 kcal (2) G-P(sol) polarization free energy of solvation -38.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds