Wall clock time and date at job start Tue Mar 31 2020 19:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35525 * 116.99689 * 2 1 4 4 C 1.38817 * 120.89993 * 0.02562 * 3 2 1 5 5 C 1.38707 * 119.20119 * 179.97438 * 4 3 2 6 6 O 1.35523 * 119.47075 * 179.97438 * 5 4 3 7 7 N 1.32589 * 121.05285 * 0.02562 * 5 4 3 8 8 C 1.31609 * 121.97819 * 359.70116 * 7 5 4 9 9 C 1.39540 * 120.66827 * 0.58790 * 8 7 5 10 10 C 1.47339 * 120.55658 * 179.70435 * 9 8 7 11 11 O 1.21616 * 120.00401 * 179.71868 * 10 9 8 12 12 N 1.34783 * 120.00266 * 359.72166 * 10 9 8 13 13 C 1.46497 * 120.00200 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.01646 * 326.39023 * 13 12 10 15 15 C 1.53882 * 110.03135 * 87.83540 * 13 12 10 16 16 C 1.54267 * 106.59905 * 119.28141 * 15 13 12 17 17 C 1.54889 * 104.19467 * 23.60979 * 16 15 13 18 18 H 1.08999 * 110.91491 * 80.44193 * 17 16 15 19 19 C 1.53001 * 110.75493 * 203.73936 * 17 16 15 20 20 N 1.46490 * 109.47264 * 288.32759 * 19 17 16 21 21 C 1.36935 * 120.00121 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00139 * 0.02562 * 21 20 19 23 23 C 1.38816 * 120.00401 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99569 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00172 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46685 * 269.99637 * 25 23 21 27 27 H 1.48494 * 109.47357 * 29.99716 * 25 23 21 28 28 H 1.48502 * 109.47120 * 150.00435 * 25 23 21 29 29 C 1.54271 * 110.02980 * 204.99914 * 13 12 10 30 30 H 1.09007 * 109.47346 * 60.00179 * 1 2 3 31 31 H 1.09006 * 109.47295 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47468 * 300.00273 * 1 2 3 33 33 H 1.08004 * 120.39765 * 359.95277 * 4 3 2 34 34 H 0.96699 * 114.00007 * 90.00694 * 6 5 4 35 35 H 1.08001 * 119.66685 * 180.29231 * 8 7 5 36 36 H 0.97002 * 119.99691 * 0.02562 * 12 10 9 37 37 H 1.09004 * 110.02606 * 238.56604 * 15 13 12 38 38 H 1.09002 * 110.03061 * 359.94537 * 15 13 12 39 39 H 1.08991 * 110.48623 * 264.93368 * 16 15 13 40 40 H 1.09000 * 110.48373 * 142.28652 * 16 15 13 41 41 H 1.09003 * 109.46836 * 168.32466 * 19 17 16 42 42 H 1.08999 * 109.47071 * 48.33505 * 19 17 16 43 43 H 0.97000 * 120.00577 * 0.02562 * 20 19 17 44 44 H 0.97001 * 119.99885 * 359.97438 * 24 23 21 45 45 H 1.08998 * 110.48457 * 98.42929 * 29 13 12 46 46 H 1.08997 * 110.48626 * 335.78641 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 1.3065 2.3835 0.0005 5 6 1.9725 3.6002 0.0011 6 8 1.2577 4.7516 0.0010 7 7 3.2972 3.6547 0.0005 8 6 4.0396 2.5680 0.0054 9 6 3.4500 1.3033 -0.0011 10 6 4.2834 0.0883 -0.0022 11 8 3.7590 -1.0090 -0.0027 12 7 5.6272 0.1927 -0.0027 13 6 6.4559 -1.0153 -0.0044 14 1 5.9638 -1.8061 0.5618 15 6 6.7084 -1.4793 -1.4497 16 6 8.2354 -1.4384 -1.6653 17 6 8.8238 -1.5536 -0.2372 18 1 8.8298 -2.5905 0.0987 19 6 10.2328 -0.9597 -0.1818 20 7 11.1631 -1.8429 -0.8891 21 6 12.4899 -1.5144 -0.9721 22 1 12.8505 -0.6044 -0.5158 23 6 13.3715 -2.3510 -1.6429 24 7 12.9319 -3.4598 -2.1995 25 14 15.1815 -1.9032 -1.7555 26 1 15.4151 -1.0895 -2.9757 27 1 15.5734 -1.1204 -0.5560 28 1 15.9950 -3.1437 -1.8246 29 6 7.8383 -0.7087 0.6078 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.2269 2.3513 0.0002 34 1 1.0500 5.0856 0.8844 35 1 5.1160 2.6559 0.0095 36 1 6.0456 1.0679 -0.0019 37 1 6.3392 -2.4959 -1.5853 38 1 6.2135 -0.8061 -2.1498 39 1 8.5306 -0.4951 -2.1245 40 1 8.5566 -2.2798 -2.2793 41 1 10.5448 -0.8610 0.8580 42 1 10.2322 0.0219 -0.6555 43 1 10.8393 -2.6600 -1.2994 44 1 11.9921 -3.6925 -2.1407 45 1 7.8698 -1.0175 1.6527 46 1 8.0695 0.3525 0.5156 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332304183.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:05 Heat of formation + Delta-G solvation = -98.280963 kcal Electronic energy + Delta-G solvation = -28176.738279 eV Core-core repulsion = 24066.022763 eV Total energy + Delta-G solvation = -4110.715516 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.19857 -40.76953 -39.82713 -39.13951 -37.84618 -36.73320 -34.93404 -33.07820 -32.70135 -31.74105 -30.05522 -29.05149 -28.35697 -26.10212 -25.29693 -24.22980 -24.04440 -22.29704 -21.50420 -20.76139 -20.36152 -19.34603 -18.98346 -18.60496 -17.95512 -17.37159 -17.10066 -16.75883 -16.49091 -16.23737 -16.00567 -15.76248 -15.63163 -15.48906 -15.07330 -14.94840 -14.85413 -14.22507 -14.15061 -13.74905 -13.60204 -13.02319 -12.92527 -12.78630 -12.63372 -12.59538 -12.58341 -12.52130 -12.05967 -11.85688 -11.78380 -11.68604 -11.51817 -11.27930 -11.17633 -10.89515 -10.59013 -10.32084 -10.22404 -9.93628 -9.07774 -8.38645 -5.31659 -0.59516 0.05483 1.59182 1.69954 1.70320 1.84392 1.99239 2.05065 2.43047 2.64761 2.73060 3.37113 3.40899 3.48036 3.54089 3.59492 3.61954 3.83525 4.02246 4.05203 4.15549 4.28770 4.29221 4.35659 4.38006 4.45602 4.48276 4.53103 4.60228 4.63126 4.68999 4.71765 4.87706 4.97476 5.08066 5.10711 5.14092 5.16263 5.30683 5.46112 5.56767 5.61026 6.03877 6.47035 6.50927 6.51885 6.72970 7.12110 7.19550 8.03263 8.14098 9.13663 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023906 B = 0.001939 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1170.951581 B =14437.131501 C =15279.423446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.300 6.300 3 C 0.227 3.773 4 C -0.282 4.282 5 C 0.371 3.629 6 O -0.485 6.485 7 N -0.549 5.549 8 C 0.208 3.792 9 C -0.255 4.255 10 C 0.567 3.433 11 O -0.561 6.561 12 N -0.707 5.707 13 C 0.152 3.848 14 H 0.081 0.919 15 C -0.125 4.125 16 C -0.107 4.107 17 C -0.092 4.092 18 H 0.067 0.933 19 C 0.166 3.834 20 N -0.758 5.758 21 C -0.332 4.332 22 H 0.067 0.933 23 C -0.109 4.109 24 N -0.977 5.977 25 Si 1.131 2.869 26 H -0.284 1.284 27 H -0.272 1.272 28 H -0.294 1.294 29 C -0.106 4.106 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.178 0.822 34 H 0.429 0.571 35 H 0.197 0.803 36 H 0.412 0.588 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.045 0.955 41 H 0.019 0.981 42 H 0.024 0.976 43 H 0.360 0.640 44 H 0.243 0.757 45 H 0.085 0.915 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.894 15.796 8.471 34.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 O -0.209 6.209 3 C 0.171 3.829 4 C -0.304 4.304 5 C 0.195 3.805 6 O -0.297 6.297 7 N -0.272 5.272 8 C 0.049 3.951 9 C -0.262 4.262 10 C 0.354 3.646 11 O -0.441 6.441 12 N -0.360 5.360 13 C 0.047 3.953 14 H 0.100 0.900 15 C -0.163 4.163 16 C -0.145 4.145 17 C -0.111 4.111 18 H 0.085 0.915 19 C 0.040 3.960 20 N -0.402 5.402 21 C -0.464 4.464 22 H 0.085 0.915 23 C -0.300 4.300 24 N -0.625 5.625 25 Si 0.956 3.044 26 H -0.211 1.211 27 H -0.197 1.197 28 H -0.220 1.220 29 C -0.145 4.145 30 H 0.093 0.907 31 H 0.135 0.865 32 H 0.098 0.902 33 H 0.195 0.805 34 H 0.293 0.707 35 H 0.214 0.786 36 H 0.251 0.749 37 H 0.080 0.920 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.037 0.963 42 H 0.042 0.958 43 H 0.192 0.808 44 H 0.054 0.946 45 H 0.104 0.896 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -28.353 15.334 7.445 33.083 hybrid contribution -2.019 -0.359 0.654 2.152 sum -30.372 14.975 8.099 34.818 Atomic orbital electron populations 1.23597 0.75586 1.06223 1.03262 1.86364 1.24029 1.25234 1.85279 1.19390 0.91067 0.85523 0.86935 1.22265 1.03465 0.90473 1.14208 1.19190 0.86481 0.85775 0.89096 1.84662 1.70768 1.37951 1.36331 1.67289 1.07282 1.33495 1.19152 1.23008 1.00918 0.83955 0.87259 1.20509 0.91788 0.95757 1.18131 1.17927 0.82469 0.88166 0.76010 1.90820 1.73516 1.28917 1.50805 1.45946 1.04916 1.10327 1.74769 1.21479 0.90715 0.87220 0.95858 0.90046 1.22496 0.95468 1.01610 0.96753 1.22262 0.94460 1.01403 0.96385 1.22160 0.93442 0.99555 0.95992 0.91494 1.20747 0.88234 0.92737 0.94314 1.42612 1.05435 1.25689 1.66480 1.20441 0.86856 1.07006 1.32088 0.91470 1.27257 1.09454 0.95162 0.98111 1.70962 1.15826 1.26313 1.49432 0.82577 0.70059 0.75044 0.76717 1.21130 1.19704 1.22047 1.22528 0.91090 1.01388 0.99464 0.90714 0.86536 0.90151 0.80506 0.70724 0.78626 0.74930 0.91979 0.91215 0.91647 0.93574 0.96283 0.95792 0.80833 0.94617 0.89626 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.84 113.37 1.12 1.18 16 2 O -0.30 -6.09 8.71 -67.92 -0.59 -6.68 16 3 C 0.23 4.22 6.74 23.06 0.16 4.38 16 4 C -0.28 -3.68 9.02 22.52 0.20 -3.48 16 5 C 0.37 5.39 7.73 84.69 0.65 6.04 16 6 O -0.49 -5.08 13.54 -88.27 -1.20 -6.27 16 7 N -0.55 -9.38 10.36 -307.96 -3.19 -12.57 16 8 C 0.21 3.13 10.71 85.04 0.91 4.04 16 9 C -0.26 -4.94 5.90 -19.92 -0.12 -5.06 16 10 C 0.57 13.41 7.76 86.64 0.67 14.08 16 11 O -0.56 -17.93 14.93 16.28 0.24 -17.69 16 12 N -0.71 -13.29 4.93 -442.42 -2.18 -15.47 16 13 C 0.15 3.43 3.25 45.72 0.15 3.58 16 14 H 0.08 2.09 7.56 -2.39 -0.02 2.07 16 15 C -0.12 -3.19 6.59 31.32 0.21 -2.98 16 16 C -0.11 -3.21 6.20 31.67 0.20 -3.02 16 17 C -0.09 -2.82 2.91 -9.50 -0.03 -2.84 16 18 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 19 C 0.17 6.49 5.70 86.38 0.49 6.98 16 20 N -0.76 -38.81 5.52 -343.47 -1.90 -40.71 16 21 C -0.33 -19.01 9.99 84.03 0.84 -18.17 16 22 H 0.07 3.73 7.83 -2.91 -0.02 3.70 16 23 C -0.11 -6.44 5.50 84.86 0.47 -5.97 16 24 N -0.98 -62.29 13.70 21.65 0.30 -62.00 16 25 Si 1.13 52.60 29.92 68.60 2.05 54.65 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 27 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 28 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 29 C -0.11 -2.32 5.97 31.67 0.19 -2.13 16 30 H 0.07 0.47 7.71 -2.38 -0.02 0.45 16 31 H 0.12 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.08 0.40 7.71 -2.39 -0.02 0.38 16 33 H 0.18 1.24 6.45 -2.91 -0.02 1.22 16 34 H 0.43 -0.12 9.06 -74.06 -0.67 -0.79 16 35 H 0.20 1.66 6.41 -2.91 -0.02 1.64 16 36 H 0.41 5.08 6.41 -92.71 -0.59 4.48 16 37 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.07 1.73 7.92 -2.39 -0.02 1.71 16 39 H 0.06 1.98 7.93 -2.39 -0.02 1.96 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 42 H 0.02 0.93 7.99 -2.39 -0.02 0.91 16 43 H 0.36 19.22 6.50 -92.71 -0.60 18.61 16 44 H 0.24 15.49 6.77 -92.71 -0.63 14.87 16 45 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.09 1.70 7.64 -2.39 -0.02 1.68 16 Total: -1.00 -83.31 379.49 -1.04 -84.35 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -0.68 Total: 25.76 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 6.10 Total: -3.37 kcal Atomic # 7 Polarization: -123.77 SS G_CDS: -6.97 Total: -130.75 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -1.54 Total: -30.64 kcal Atomic # 14 Polarization: 52.60 SS G_CDS: 2.05 Total: 54.65 kcal Total: -83.31 -1.04 -84.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332304183.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.927 kcal (2) G-P(sol) polarization free energy of solvation -83.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds