Wall clock time and date at job start Tue Mar 31 2020 18:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99959 * 2 1 4 4 C 1.53005 * 109.47028 * 89.99901 * 3 2 1 5 5 H 1.09005 * 109.47310 * 305.00257 * 4 3 2 6 6 O 1.42901 * 109.47056 * 65.00195 * 4 3 2 7 7 C 1.52992 * 109.47277 * 185.00044 * 4 3 2 8 8 N 1.46499 * 109.47267 * 180.02562 * 7 4 3 9 9 C 1.36935 * 119.99938 * 179.97438 * 8 7 4 10 10 H 1.08000 * 120.00518 * 359.72965 * 9 8 7 11 11 C 1.38817 * 119.99990 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99869 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47361 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46860 * 120.00310 * 13 11 9 16 16 H 1.48500 * 109.47264 * 240.00123 * 13 11 9 17 17 C 1.34775 * 120.00474 * 180.02562 * 2 1 3 18 18 O 1.21277 * 120.00178 * 179.97438 * 17 2 1 19 19 C 1.50708 * 119.99399 * 359.97438 * 17 2 1 20 20 C 1.50700 * 109.46716 * 180.02562 * 19 17 2 21 21 C 1.38365 * 119.85408 * 269.73061 * 20 19 17 22 22 C 1.37955 * 120.14607 * 179.72663 * 21 20 19 23 23 C 1.39586 * 119.85124 * 0.54271 * 22 21 20 24 24 C 1.47838 * 120.14148 * 179.70477 * 23 22 21 25 25 N 1.34771 * 120.00552 * 0.02562 * 24 23 22 26 26 O 1.21556 * 119.99836 * 180.02562 * 24 23 22 27 27 C 1.39574 * 119.70883 * 359.73153 * 23 22 21 28 28 C 1.37955 * 119.85456 * 359.97438 * 27 23 22 29 29 H 1.08997 * 109.47032 * 89.99610 * 1 2 3 30 30 H 1.08997 * 109.46896 * 209.99713 * 1 2 3 31 31 H 1.08998 * 109.46684 * 329.99938 * 1 2 3 32 32 H 1.09005 * 109.47213 * 330.00487 * 3 2 1 33 33 H 1.08996 * 109.47319 * 209.99820 * 3 2 1 34 34 H 0.96700 * 113.99645 * 59.99638 * 6 4 3 35 35 H 1.09004 * 109.47330 * 60.00123 * 7 4 3 36 36 H 1.09005 * 109.47124 * 300.00327 * 7 4 3 37 37 H 0.96999 * 119.99984 * 359.97438 * 8 7 4 38 38 H 0.96996 * 119.99743 * 179.97438 * 12 11 9 39 39 H 1.08994 * 109.47248 * 300.00314 * 19 17 2 40 40 H 1.08993 * 109.47026 * 60.00652 * 19 17 2 41 41 H 1.08005 * 119.92405 * 0.02562 * 21 20 19 42 42 H 1.07998 * 120.07393 * 180.25138 * 22 21 20 43 43 H 0.97009 * 120.00017 * 359.97438 * 25 24 23 44 44 H 0.97005 * 120.00788 * 179.97438 * 25 24 23 45 45 H 1.07995 * 120.07203 * 179.97438 * 27 23 22 46 46 H 1.08005 * 119.92948 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4426 5 1 1.5061 1.7549 1.9816 6 8 3.3210 0.7725 2.0814 7 6 3.1060 3.0938 1.4445 8 7 3.3507 3.5164 2.8256 9 6 3.9327 4.7301 3.0774 10 1 4.2155 5.3739 2.2576 11 6 4.1641 5.1308 4.3861 12 7 3.8245 4.3440 5.3851 13 14 4.9588 6.7861 4.7295 14 1 5.2433 7.4746 3.4449 15 1 4.0367 7.6186 5.5432 16 1 6.2276 6.5813 5.4734 17 6 2.1390 -1.1671 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 6 2.3648 -3.6177 -0.0005 21 6 2.8081 -4.1448 -1.2005 22 6 3.7089 -5.1897 -1.2076 23 6 4.1644 -5.7225 -0.0005 24 6 5.1248 -6.8464 -0.0006 25 7 5.5628 -7.3586 -1.1677 26 8 5.5194 -7.3087 1.0521 27 6 3.7088 -5.1897 1.2064 28 6 2.8127 -4.1409 1.1994 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5138 32 1 1.6084 2.0285 -0.5138 33 1 3.1499 1.1385 -0.5138 34 1 4.1837 0.6812 1.6542 35 1 2.4436 3.8093 0.9571 36 1 4.0524 3.0493 0.9054 37 1 3.1004 2.9366 3.5618 38 1 3.9865 4.6238 6.2995 39 1 0.7591 -2.5302 0.8896 40 1 0.7586 -2.5298 -0.8903 41 1 2.4518 -3.7342 -2.1338 42 1 4.0573 -5.5976 -2.1450 43 1 5.2476 -6.9900 -2.0079 44 1 6.1932 -8.0959 -1.1678 45 1 4.0571 -5.5977 2.1438 46 1 2.4591 -3.7280 2.1327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332604746.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:49 Heat of formation + Delta-G solvation = -83.316561 kcal Electronic energy + Delta-G solvation = -28124.255813 eV Core-core repulsion = 24014.189201 eV Total energy + Delta-G solvation = -4110.066611 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.59249 -39.92425 -38.47682 -37.20660 -35.28058 -34.26627 -33.95150 -32.99144 -31.28305 -31.17455 -29.76698 -28.14557 -26.95326 -25.25140 -23.52174 -22.95534 -22.48481 -21.13174 -20.70815 -19.32401 -18.49883 -17.27331 -17.19792 -17.12629 -16.61731 -16.09984 -15.69163 -15.39853 -15.20614 -15.01267 -14.91263 -14.67713 -14.40374 -13.88768 -13.77857 -13.56992 -13.54213 -13.21965 -12.94961 -12.71057 -12.50916 -12.42724 -12.21883 -12.09076 -11.88862 -11.45896 -11.30300 -10.91325 -10.81911 -10.63249 -10.37474 -10.10343 -10.07555 -9.95719 -9.75534 -9.59659 -9.23085 -9.01871 -8.88098 -8.51774 -6.89570 -5.72814 -3.02174 0.53912 1.13798 2.52070 2.61801 2.95184 3.16294 3.44868 3.49846 3.52650 3.61253 4.27269 4.41954 4.47893 4.55295 4.59560 4.68848 4.83510 4.88900 4.93464 5.02723 5.05458 5.17705 5.22729 5.31553 5.36145 5.47343 5.53935 5.56199 5.66952 5.72383 5.74843 5.95666 6.02437 6.06400 6.25368 6.26441 6.40615 6.42899 6.53771 6.60740 6.75862 6.96111 7.29146 7.71130 7.91201 8.14871 8.23692 8.45630 9.56856 10.15276 10.51008 11.49638 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015191 B = 0.002156 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.777065 B =12984.507101 C =14184.709988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.612 5.612 3 C 0.085 3.915 4 C 0.086 3.914 5 H 0.094 0.906 6 O -0.546 6.546 7 C 0.125 3.875 8 N -0.725 5.725 9 C -0.242 4.242 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.929 5.929 13 Si 0.907 3.093 14 H -0.281 1.281 15 H -0.292 1.292 16 H -0.291 1.291 17 C 0.520 3.480 18 O -0.522 6.522 19 C -0.106 4.106 20 C -0.033 4.033 21 C -0.115 4.115 22 C -0.085 4.085 23 C -0.145 4.145 24 C 0.565 3.435 25 N -0.853 5.853 26 O -0.541 6.541 27 C -0.054 4.054 28 C -0.109 4.109 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.374 0.626 35 H 0.024 0.976 36 H 0.020 0.980 37 H 0.389 0.611 38 H 0.255 0.745 39 H 0.106 0.894 40 H 0.102 0.898 41 H 0.126 0.874 42 H 0.125 0.875 43 H 0.401 0.599 44 H 0.404 0.596 45 H 0.137 0.863 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.635 -21.534 -19.808 30.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.346 5.346 3 C -0.038 4.038 4 C 0.026 3.974 5 H 0.112 0.888 6 O -0.351 6.351 7 C -0.004 4.004 8 N -0.370 5.370 9 C -0.373 4.373 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.738 3.262 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.218 1.218 17 C 0.307 3.693 18 O -0.398 6.398 19 C -0.146 4.146 20 C -0.034 4.034 21 C -0.133 4.133 22 C -0.104 4.104 23 C -0.148 4.148 24 C 0.351 3.649 25 N -0.417 5.417 26 O -0.418 6.418 27 C -0.073 4.073 28 C -0.127 4.127 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.105 0.895 34 H 0.221 0.779 35 H 0.041 0.959 36 H 0.038 0.962 37 H 0.223 0.777 38 H 0.064 0.936 39 H 0.124 0.876 40 H 0.121 0.879 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.230 0.770 44 H 0.235 0.765 45 H 0.155 0.845 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.272 -21.606 -18.672 29.731 hybrid contribution 0.777 0.919 -0.395 1.266 sum -7.495 -20.688 -19.067 29.115 Atomic orbital electron populations 1.21838 0.79619 1.03702 1.01637 1.47719 1.06781 1.06012 1.74047 1.22264 0.98247 0.84531 0.98740 1.22471 0.94493 0.89089 0.91388 0.88822 1.86541 1.29186 1.62407 1.56974 1.21235 0.96984 0.92427 0.89711 1.42245 1.73781 1.20145 1.00807 1.19266 1.32006 0.94235 0.91807 0.91240 1.24771 1.02018 0.98616 0.95609 1.69693 1.53067 1.36784 0.98212 0.86114 0.78736 0.83567 0.77735 1.20593 1.21877 1.21826 1.20267 0.88051 0.84669 0.76292 1.90712 1.13688 1.86996 1.48363 1.20788 0.97684 0.90813 1.05312 1.19544 0.95975 0.94379 0.93509 1.20879 0.98084 0.96682 0.97632 1.21157 0.96452 0.96158 0.96625 1.19828 1.01220 0.99005 0.94728 1.18337 0.80476 0.82358 0.83698 1.43755 1.49918 1.39475 1.08527 1.90824 1.58288 1.61452 1.31248 1.21247 0.94111 0.94219 0.97730 1.21055 0.97499 0.96095 0.98008 0.92567 0.91019 0.90604 0.89728 0.89510 0.77850 0.95862 0.96235 0.77665 0.93552 0.87589 0.87938 0.85579 0.85767 0.76996 0.76496 0.84538 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.24 59.85 0.61 1.13 16 2 N -0.61 -6.58 2.86 -181.56 -0.52 -7.10 16 3 C 0.09 1.07 5.11 -4.04 -0.02 1.05 16 4 C 0.09 1.42 3.30 -26.73 -0.09 1.33 16 5 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 6 O -0.55 -10.35 11.95 -42.91 -0.51 -10.86 16 7 C 0.13 2.50 5.92 -4.05 -0.02 2.48 16 8 N -0.72 -18.97 5.49 -59.91 -0.33 -19.30 16 9 C -0.24 -6.95 9.99 -15.06 -0.15 -7.10 16 10 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 11 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 12 N -0.93 -29.02 13.06 55.49 0.72 -28.29 16 13 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 14 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 16 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 17 C 0.52 6.21 7.29 -10.98 -0.08 6.13 16 18 O -0.52 -8.29 14.59 -2.11 -0.03 -8.32 16 19 C -0.11 -0.86 4.38 -29.03 -0.13 -0.98 16 20 C -0.03 -0.32 4.38 -104.53 -0.46 -0.78 16 21 C -0.11 -0.96 9.68 -39.64 -0.38 -1.35 16 22 C -0.09 -0.67 9.54 -39.18 -0.37 -1.05 16 23 C -0.14 -1.48 5.87 -104.97 -0.62 -2.10 16 24 C 0.56 6.00 8.05 -12.34 -0.10 5.90 16 25 N -0.85 -5.11 8.82 30.53 0.27 -4.84 16 26 O -0.54 -7.94 17.18 5.32 0.09 -7.85 16 27 C -0.05 -0.61 9.60 -39.19 -0.38 -0.98 16 28 C -0.11 -1.15 9.68 -39.64 -0.38 -1.54 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.07 0.37 6.44 -51.93 -0.33 0.04 16 31 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 32 H 0.08 0.87 8.07 -51.93 -0.42 0.45 16 33 H 0.09 1.17 7.42 -51.93 -0.39 0.79 16 34 H 0.37 6.77 8.75 45.56 0.40 7.17 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.39 11.00 7.54 -40.82 -0.31 10.70 16 38 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 39 H 0.11 0.70 7.34 -51.93 -0.38 0.32 16 40 H 0.10 0.53 8.05 -51.93 -0.42 0.12 16 41 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 42 H 0.12 0.54 6.41 -52.49 -0.34 0.21 16 43 H 0.40 1.23 6.87 -40.82 -0.28 0.95 16 44 H 0.40 1.90 8.93 -40.82 -0.36 1.54 16 45 H 0.14 1.55 7.65 -52.49 -0.40 1.15 16 46 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 LS Contribution 389.73 15.07 5.87 5.87 Total: -1.00 -39.08 389.73 -7.85 -46.94 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: -5.73 Total: 14.30 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -2.66 Total: 1.64 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.15 Total: -59.54 kcal Atomic # 8 Polarization: -26.58 SS G_CDS: -0.45 Total: -27.03 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -39.08 -7.85 -46.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332604746.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.379 kcal (2) G-P(sol) polarization free energy of solvation -39.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds