Wall clock time and date at job start Tue Mar 31 2020 18:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 119.99959 * 2 1 4 4 C 1.53005 * 109.47028 * 89.99901 * 3 2 1 5 5 H 1.09005 * 109.47310 * 305.00257 * 4 3 2 6 6 O 1.42901 * 109.47056 * 65.00195 * 4 3 2 7 7 C 1.52992 * 109.47277 * 185.00044 * 4 3 2 8 8 N 1.46499 * 109.47267 * 180.02562 * 7 4 3 9 9 C 1.36935 * 119.99938 * 179.97438 * 8 7 4 10 10 H 1.08000 * 120.00518 * 359.72965 * 9 8 7 11 11 C 1.38817 * 119.99990 * 179.97438 * 9 8 7 12 12 N 1.31617 * 119.99869 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99909 * 179.97438 * 11 9 8 14 14 H 1.48501 * 109.47361 * 0.02562 * 13 11 9 15 15 H 1.48508 * 109.46860 * 120.00310 * 13 11 9 16 16 H 1.48500 * 109.47264 * 240.00123 * 13 11 9 17 17 C 1.34775 * 120.00474 * 180.02562 * 2 1 3 18 18 O 1.21277 * 120.00178 * 179.97438 * 17 2 1 19 19 C 1.50708 * 119.99399 * 359.97438 * 17 2 1 20 20 C 1.50700 * 109.46716 * 180.02562 * 19 17 2 21 21 C 1.38365 * 119.85408 * 269.73061 * 20 19 17 22 22 C 1.37955 * 120.14607 * 179.72663 * 21 20 19 23 23 C 1.39586 * 119.85124 * 0.54271 * 22 21 20 24 24 C 1.47838 * 120.14148 * 179.70477 * 23 22 21 25 25 N 1.34771 * 120.00552 * 0.02562 * 24 23 22 26 26 O 1.21556 * 119.99836 * 180.02562 * 24 23 22 27 27 C 1.39574 * 119.70883 * 359.73153 * 23 22 21 28 28 C 1.37955 * 119.85456 * 359.97438 * 27 23 22 29 29 H 1.08997 * 109.47032 * 89.99610 * 1 2 3 30 30 H 1.08997 * 109.46896 * 209.99713 * 1 2 3 31 31 H 1.08998 * 109.46684 * 329.99938 * 1 2 3 32 32 H 1.09005 * 109.47213 * 330.00487 * 3 2 1 33 33 H 1.08996 * 109.47319 * 209.99820 * 3 2 1 34 34 H 0.96700 * 113.99645 * 59.99638 * 6 4 3 35 35 H 1.09004 * 109.47330 * 60.00123 * 7 4 3 36 36 H 1.09005 * 109.47124 * 300.00327 * 7 4 3 37 37 H 0.96999 * 119.99984 * 359.97438 * 8 7 4 38 38 H 0.96996 * 119.99743 * 179.97438 * 12 11 9 39 39 H 1.08994 * 109.47248 * 300.00314 * 19 17 2 40 40 H 1.08993 * 109.47026 * 60.00652 * 19 17 2 41 41 H 1.08005 * 119.92405 * 0.02562 * 21 20 19 42 42 H 1.07998 * 120.07393 * 180.25138 * 22 21 20 43 43 H 0.97009 * 120.00017 * 359.97438 * 25 24 23 44 44 H 0.97005 * 120.00788 * 179.97438 * 25 24 23 45 45 H 1.07995 * 120.07203 * 179.97438 * 27 23 22 46 46 H 1.08005 * 119.92948 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4426 5 1 1.5061 1.7549 1.9816 6 8 3.3210 0.7725 2.0814 7 6 3.1060 3.0938 1.4445 8 7 3.3507 3.5164 2.8256 9 6 3.9327 4.7301 3.0774 10 1 4.2155 5.3739 2.2576 11 6 4.1641 5.1308 4.3861 12 7 3.8245 4.3440 5.3851 13 14 4.9588 6.7861 4.7295 14 1 5.2433 7.4746 3.4449 15 1 4.0367 7.6186 5.5432 16 1 6.2276 6.5813 5.4734 17 6 2.1390 -1.1671 -0.0005 18 8 3.3518 -1.1671 -0.0010 19 6 1.3854 -2.4723 -0.0005 20 6 2.3648 -3.6177 -0.0005 21 6 2.8081 -4.1448 -1.2005 22 6 3.7089 -5.1897 -1.2076 23 6 4.1644 -5.7225 -0.0005 24 6 5.1248 -6.8464 -0.0006 25 7 5.5628 -7.3586 -1.1677 26 8 5.5194 -7.3087 1.0521 27 6 3.7088 -5.1897 1.2064 28 6 2.8127 -4.1409 1.1994 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3632 0.8900 0.5138 32 1 1.6084 2.0285 -0.5138 33 1 3.1499 1.1385 -0.5138 34 1 4.1837 0.6812 1.6542 35 1 2.4436 3.8093 0.9571 36 1 4.0524 3.0493 0.9054 37 1 3.1004 2.9366 3.5618 38 1 3.9865 4.6238 6.2995 39 1 0.7591 -2.5302 0.8896 40 1 0.7586 -2.5298 -0.8903 41 1 2.4518 -3.7342 -2.1338 42 1 4.0573 -5.5976 -2.1450 43 1 5.2476 -6.9900 -2.0079 44 1 6.1932 -8.0959 -1.1678 45 1 4.0571 -5.5977 2.1438 46 1 2.4591 -3.7280 2.1327 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332604746.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:47 Heat of formation + Delta-G solvation = -115.489699 kcal Electronic energy + Delta-G solvation = -28125.650944 eV Core-core repulsion = 24014.189201 eV Total energy + Delta-G solvation = -4111.461743 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.37943 -40.79685 -39.33433 -38.51486 -36.33389 -35.82912 -35.01620 -33.71946 -33.18495 -31.87093 -31.08438 -29.06596 -27.88174 -26.61462 -24.82606 -23.78083 -23.65323 -22.59884 -21.46644 -20.15990 -19.24346 -19.17727 -18.15881 -17.90507 -17.73622 -17.00470 -16.68808 -16.50231 -16.35182 -16.08649 -15.85773 -15.80025 -15.74841 -15.21736 -14.92853 -14.56634 -14.41166 -14.27583 -14.14068 -13.86181 -13.65044 -13.33837 -13.17747 -12.98326 -12.86235 -12.82290 -12.73587 -12.43008 -12.14125 -11.99583 -11.96817 -11.81808 -11.23729 -11.13873 -10.99833 -10.80499 -10.74842 -9.94053 -9.74927 -9.47816 -9.02584 -7.96162 -5.26117 -0.20241 0.43091 1.45246 1.47262 1.57173 1.71343 1.78330 2.15777 2.51620 2.54519 2.87602 3.35452 3.50188 3.61758 3.77190 3.80662 3.85159 3.93965 4.02894 4.11654 4.22640 4.30016 4.36291 4.42073 4.50943 4.55602 4.60381 4.65078 4.72526 4.85957 4.86677 4.91303 5.03298 5.04334 5.25327 5.26305 5.35746 5.45421 5.54828 5.56698 5.82475 5.91965 6.24739 6.38551 6.48883 6.80568 7.25295 7.30765 7.31008 8.07923 8.30340 9.27527 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.015191 B = 0.002156 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1842.777065 B =12984.507101 C =14184.709988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.612 5.612 3 C 0.097 3.903 4 C 0.095 3.905 5 H 0.089 0.911 6 O -0.566 6.566 7 C 0.122 3.878 8 N -0.741 5.741 9 C -0.246 4.246 10 H 0.078 0.922 11 C -0.080 4.080 12 N -0.971 5.971 13 Si 0.978 3.022 14 H -0.263 1.263 15 H -0.291 1.291 16 H -0.295 1.295 17 C 0.511 3.489 18 O -0.571 6.571 19 C -0.098 4.098 20 C -0.042 4.042 21 C -0.116 4.116 22 C -0.076 4.076 23 C -0.160 4.160 24 C 0.560 3.440 25 N -0.827 5.827 26 O -0.594 6.594 27 C -0.079 4.079 28 C -0.126 4.126 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.374 0.626 35 H 0.041 0.959 36 H 0.021 0.979 37 H 0.374 0.626 38 H 0.251 0.749 39 H 0.121 0.879 40 H 0.142 0.858 41 H 0.156 0.844 42 H 0.164 0.836 43 H 0.418 0.582 44 H 0.413 0.587 45 H 0.119 0.881 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.120 -21.151 -23.276 33.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.344 5.344 3 C -0.027 4.027 4 C 0.035 3.965 5 H 0.107 0.893 6 O -0.371 6.371 7 C -0.005 4.005 8 N -0.384 5.384 9 C -0.378 4.378 10 H 0.096 0.904 11 C -0.272 4.272 12 N -0.621 5.621 13 Si 0.806 3.194 14 H -0.187 1.187 15 H -0.218 1.218 16 H -0.223 1.223 17 C 0.301 3.699 18 O -0.449 6.449 19 C -0.137 4.137 20 C -0.042 4.042 21 C -0.134 4.134 22 C -0.094 4.094 23 C -0.163 4.163 24 C 0.347 3.653 25 N -0.392 5.392 26 O -0.476 6.476 27 C -0.098 4.098 28 C -0.144 4.144 29 H 0.102 0.898 30 H 0.108 0.892 31 H 0.092 0.908 32 H 0.131 0.869 33 H 0.094 0.906 34 H 0.222 0.778 35 H 0.059 0.941 36 H 0.039 0.961 37 H 0.206 0.794 38 H 0.059 0.941 39 H 0.139 0.861 40 H 0.160 0.840 41 H 0.174 0.826 42 H 0.181 0.819 43 H 0.250 0.750 44 H 0.245 0.755 45 H 0.137 0.863 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.802 -21.223 -22.256 32.277 hybrid contribution 1.201 0.775 0.577 1.541 sum -8.601 -20.448 -21.679 31.017 Atomic orbital electron populations 1.22148 0.76947 1.04649 1.03760 1.47831 1.08397 1.04966 1.73215 1.21997 0.98887 0.86313 0.95493 1.22441 0.93203 0.86852 0.94025 0.89298 1.86517 1.29591 1.62957 1.58057 1.21460 0.97564 0.94848 0.86632 1.42475 1.73706 1.19379 1.02856 1.19717 1.30889 0.95066 0.92125 0.90363 1.25669 1.03470 1.02532 0.95575 1.69864 1.55039 1.38886 0.98350 0.85013 0.77211 0.79187 0.77960 1.18715 1.21797 1.22263 1.20972 0.87769 0.86003 0.75193 1.90695 1.15895 1.87756 1.50596 1.20844 0.97251 0.87770 1.07869 1.19813 0.96230 0.94744 0.93463 1.21296 0.97509 0.96304 0.98292 1.21567 0.95363 0.95412 0.97083 1.19936 1.01688 0.99355 0.95362 1.18522 0.80382 0.82365 0.84038 1.43543 1.48837 1.38832 1.07948 1.90794 1.60309 1.63168 1.33296 1.21260 0.95334 0.95284 0.97916 1.21128 0.98050 0.96414 0.98793 0.89756 0.89153 0.90758 0.86858 0.90593 0.77811 0.94103 0.96149 0.79442 0.94052 0.86140 0.84048 0.82591 0.81853 0.74952 0.75488 0.86330 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.67 10.24 127.77 1.31 1.97 16 2 N -0.61 -11.62 2.86 -846.74 -2.42 -14.04 16 3 C 0.10 2.24 5.11 86.38 0.44 2.69 16 4 C 0.10 3.08 3.30 30.59 0.10 3.18 16 5 H 0.09 2.96 8.14 -2.38 -0.02 2.94 16 6 O -0.57 -21.90 11.95 -141.64 -1.69 -23.59 16 7 C 0.12 4.81 5.92 86.38 0.51 5.33 16 8 N -0.74 -39.15 5.49 -343.45 -1.89 -41.04 16 9 C -0.25 -14.13 9.99 84.04 0.84 -13.29 16 10 H 0.08 4.26 7.83 -2.91 -0.02 4.23 16 11 C -0.08 -4.77 5.50 84.86 0.47 -4.30 16 12 N -0.97 -61.91 13.06 21.65 0.28 -61.63 16 13 Si 0.98 47.23 29.55 68.60 2.03 49.25 16 14 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 15 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 16 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 17 C 0.51 11.27 7.29 87.66 0.64 11.91 16 18 O -0.57 -17.87 14.59 4.32 0.06 -17.80 16 19 C -0.10 -1.30 4.38 29.10 0.13 -1.18 16 20 C -0.04 -0.74 4.38 -19.81 -0.09 -0.83 16 21 C -0.12 -1.62 9.68 22.23 0.22 -1.41 16 22 C -0.08 -1.02 9.54 22.53 0.21 -0.81 16 23 C -0.16 -3.28 5.87 -20.09 -0.12 -3.39 16 24 C 0.56 12.01 8.05 86.79 0.70 12.70 16 25 N -0.83 -8.66 8.82 -175.61 -1.55 -10.21 16 26 O -0.59 -18.49 17.18 -3.89 -0.07 -18.56 16 27 C -0.08 -1.90 9.60 22.53 0.22 -1.69 16 28 C -0.13 -2.77 9.68 22.23 0.22 -2.55 16 29 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.09 0.58 6.44 -2.39 -0.02 0.57 16 31 H 0.07 0.80 8.07 -2.39 -0.02 0.78 16 32 H 0.11 1.96 8.07 -2.38 -0.02 1.95 16 33 H 0.08 1.96 7.42 -2.39 -0.02 1.94 16 34 H 0.37 14.08 8.75 -74.06 -0.65 13.43 16 35 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.37 21.70 7.54 -92.71 -0.70 21.00 16 38 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 39 H 0.12 1.27 7.34 -2.39 -0.02 1.25 16 40 H 0.14 0.77 8.05 -2.39 -0.02 0.75 16 41 H 0.16 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.16 0.76 6.41 -2.91 -0.02 0.74 16 43 H 0.42 1.37 6.87 -92.70 -0.64 0.73 16 44 H 0.41 3.32 8.93 -92.70 -0.83 2.49 16 45 H 0.12 3.12 7.65 -2.91 -0.02 3.10 16 46 H 0.13 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -88.89 389.73 -1.21 -90.09 By element: Atomic # 1 Polarization: 40.95 SS G_CDS: -1.76 Total: 39.20 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 5.79 Total: 8.33 kcal Atomic # 7 Polarization: -121.35 SS G_CDS: -5.57 Total: -126.92 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: -1.70 Total: -59.95 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.25 kcal Total: -88.89 -1.21 -90.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332604746.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.395 kcal (2) G-P(sol) polarization free energy of solvation -88.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds