Wall clock time and date at job start Tue Mar 31 2020 18:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99584 * 2 1 4 4 O 1.42902 * 112.91040 * 289.55698 * 3 2 1 5 5 C 1.42900 * 113.99971 * 310.89169 * 4 3 2 6 6 C 1.53787 * 113.61309 * 60.81369 * 3 2 1 7 7 C 1.53777 * 87.08314 * 89.11403 * 6 3 2 8 8 C 1.52997 * 113.61486 * 139.97981 * 7 6 3 9 9 N 1.46505 * 109.47208 * 174.99995 * 8 7 6 10 10 C 1.34775 * 120.00086 * 180.02562 * 9 8 7 11 11 O 1.21577 * 119.99711 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99943 * 179.97438 * 10 9 8 13 13 C 1.39238 * 119.99960 * 185.06787 * 12 10 9 14 14 C 1.39691 * 119.57769 * 185.71391 * 13 12 10 15 15 C 1.38648 * 119.49438 * 179.73323 * 14 13 12 16 16 C 1.38348 * 118.67056 * 0.53270 * 15 14 13 17 17 C 1.40567 * 119.13483 * 359.73208 * 16 15 14 18 18 C 1.41334 * 119.79212 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99528 * 359.97438 * 18 17 16 20 20 C 1.40021 * 120.00442 * 179.97438 * 18 17 16 21 21 N 1.30749 * 120.00166 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00233 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47232 * 60.00200 * 22 20 18 24 24 H 1.48502 * 109.47374 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47017 * 300.00360 * 22 20 18 26 26 N 1.31903 * 119.57507 * 5.99302 * 13 12 10 27 27 C 1.53784 * 113.61247 * 158.30710 * 3 2 1 28 28 H 1.08990 * 109.47433 * 304.76991 * 1 2 3 29 29 H 1.09003 * 109.47151 * 64.77481 * 1 2 3 30 30 H 1.09001 * 109.46712 * 184.77197 * 1 2 3 31 31 H 1.09001 * 109.46594 * 175.13359 * 5 4 3 32 32 H 1.08995 * 109.46604 * 295.13159 * 5 4 3 33 33 H 1.08994 * 109.47223 * 55.13388 * 5 4 3 34 34 H 1.09001 * 113.61189 * 334.56273 * 6 3 2 35 35 H 1.09003 * 113.61195 * 203.66306 * 6 3 2 36 36 H 1.09001 * 113.61337 * 270.79944 * 7 6 3 37 37 H 1.08994 * 109.47150 * 294.99765 * 8 7 6 38 38 H 1.09001 * 109.47043 * 55.00072 * 8 7 6 39 39 H 0.97000 * 119.99530 * 359.97438 * 9 8 7 40 40 H 0.96998 * 119.99618 * 5.07716 * 12 10 9 41 41 H 1.07998 * 120.24890 * 359.97438 * 14 13 12 42 42 H 1.07996 * 120.66213 * 180.24188 * 15 14 13 43 43 H 1.08000 * 120.43380 * 179.74767 * 16 15 14 44 44 H 0.96999 * 120.00337 * 179.97438 * 21 20 18 45 45 H 1.09001 * 113.61300 * 156.33880 * 27 3 2 46 46 H 1.08998 * 113.61400 * 25.43148 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8338 1.9929 -1.2404 5 6 2.1898 1.2205 -2.3887 6 6 1.6329 2.1477 1.2302 7 6 2.8638 1.5417 1.9247 8 6 3.6423 2.5452 2.7778 9 7 4.7189 1.8507 3.4882 10 6 5.5405 2.5388 4.3055 11 8 5.3884 3.7360 4.4528 12 7 6.5306 1.8997 4.9595 13 6 7.3122 2.5881 5.8836 14 6 8.4104 1.9522 6.4674 15 6 9.1908 2.6411 7.3832 16 6 8.8480 3.9433 7.7006 17 6 7.7277 4.5260 7.0831 18 6 7.3652 5.8555 7.3968 19 1 7.9482 6.4204 8.1092 20 6 6.2504 6.4405 6.7839 21 7 5.5443 5.7566 5.9218 22 14 5.7718 8.1980 7.1979 23 1 6.8911 9.1104 6.8521 24 1 4.5645 8.5784 6.4213 25 1 5.4789 8.3023 8.6501 26 7 7.0029 3.8306 6.2006 27 6 3.4568 1.3358 0.5208 28 1 -0.3634 0.5860 0.8441 29 1 -0.3633 0.4380 -0.9297 30 1 -0.3633 -1.0241 0.0855 31 1 1.9468 1.7797 -3.2922 32 1 3.2592 1.0104 -2.3679 33 1 1.6351 0.2823 -2.3817 34 1 0.6866 1.8558 1.6857 35 1 1.7102 3.2222 1.0641 36 1 2.6535 0.6112 2.4521 37 1 4.0689 3.3149 2.1346 38 1 2.9693 3.0072 3.5001 39 1 4.8400 0.8954 3.3710 40 1 6.6987 0.9603 4.7863 41 1 8.6520 0.9329 6.2045 42 1 10.0464 2.1691 7.8431 43 1 9.4336 4.5050 8.4134 44 1 4.7718 6.1616 5.4975 45 1 4.0327 2.1883 0.1608 46 1 3.9829 0.3884 0.4037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001345897376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:48 Heat of formation + Delta-G solvation = -30.447313 kcal Electronic energy + Delta-G solvation = -28855.308601 eV Core-core repulsion = 24747.534573 eV Total energy + Delta-G solvation = -4107.774029 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.69469 -39.35176 -37.73332 -36.61410 -36.33185 -34.11026 -33.39031 -32.92193 -30.24006 -29.18782 -27.93843 -27.49515 -26.41259 -25.68034 -25.35281 -22.49091 -21.66554 -21.08940 -20.13311 -19.52750 -18.13440 -17.81926 -17.03513 -16.42913 -16.21770 -16.01778 -15.56551 -14.91930 -14.82206 -14.73313 -14.48842 -14.33637 -14.15600 -13.78774 -13.65262 -13.13368 -12.85584 -12.75951 -12.63117 -12.44846 -12.20931 -11.90625 -11.88111 -11.58967 -11.17294 -11.09683 -11.04128 -10.91784 -10.80861 -10.61057 -10.40873 -10.23896 -9.98369 -9.89716 -9.62439 -9.07376 -8.96655 -8.40712 -7.89825 -7.17882 -6.87294 -6.06073 -4.33808 2.90029 3.10005 3.18364 3.20399 3.22318 3.24018 3.32583 3.42310 4.11416 4.17549 4.27055 4.30618 4.45732 4.78461 4.91674 4.96802 5.00851 5.01325 5.11755 5.14310 5.18998 5.27626 5.42428 5.43321 5.49337 5.61995 5.65711 5.83195 6.01805 6.11263 6.12712 6.17640 6.25123 6.53147 6.66943 6.85417 6.90218 7.03681 7.13533 7.29319 7.42493 7.67542 7.80158 7.86879 8.22665 8.35481 8.72393 8.86373 9.11584 9.65403 10.32931 10.55143 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014763 B = 0.002623 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.160776 B =10673.937500 C =12048.905688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.374 6.374 3 C 0.234 3.766 4 O -0.385 6.385 5 C 0.033 3.967 6 C -0.134 4.134 7 C -0.112 4.112 8 C 0.158 3.842 9 N -0.759 5.759 10 C 0.665 3.335 11 O -0.466 6.466 12 N -0.674 5.674 13 C 0.388 3.612 14 C -0.359 4.359 15 C -0.036 4.036 16 C -0.307 4.307 17 C 0.271 3.729 18 C -0.426 4.426 19 H 0.081 0.919 20 C 0.057 3.943 21 N -0.650 5.650 22 Si 0.895 3.105 23 H -0.267 1.267 24 H -0.279 1.279 25 H -0.268 1.268 26 N -0.472 5.472 27 C -0.133 4.133 28 H 0.050 0.950 29 H 0.045 0.955 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.043 0.957 33 H 0.047 0.953 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.384 0.616 40 H 0.394 0.606 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.272 0.728 45 H 0.106 0.894 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.389 -11.361 -13.697 20.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.294 6.294 3 C 0.157 3.843 4 O -0.306 6.306 5 C -0.064 4.064 6 C -0.172 4.172 7 C -0.131 4.131 8 C 0.033 3.967 9 N -0.419 5.419 10 C 0.363 3.637 11 O -0.330 6.330 12 N -0.323 5.323 13 C 0.148 3.852 14 C -0.385 4.385 15 C -0.060 4.060 16 C -0.331 4.331 17 C 0.146 3.854 18 C -0.456 4.456 19 H 0.099 0.901 20 C -0.173 4.173 21 N -0.269 5.269 22 Si 0.720 3.280 23 H -0.192 1.192 24 H -0.204 1.204 25 H -0.193 1.193 26 N -0.190 5.190 27 C -0.170 4.170 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.216 0.784 40 H 0.227 0.773 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.084 0.916 45 H 0.124 0.876 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.475 -9.695 -14.113 20.612 hybrid contribution 0.521 -0.861 0.274 1.043 sum -10.955 -10.555 -13.839 20.565 Atomic orbital electron populations 1.22776 0.80468 1.02782 1.00870 1.88001 1.20584 1.26884 1.93973 1.23986 0.94908 0.81324 0.84084 1.88075 1.87586 1.40286 1.14625 1.22609 0.99620 0.96280 0.87843 1.23538 0.98879 1.01617 0.93167 1.22548 0.95851 0.99939 0.94750 1.20937 0.88027 0.93388 0.94306 1.45245 1.34825 1.10983 1.50875 1.16393 0.80454 0.86578 0.80252 1.91354 1.69906 1.09991 1.61786 1.42561 1.34098 1.12864 1.42728 1.18338 0.87582 0.91186 0.88114 1.20440 1.04095 1.00911 1.13011 1.20538 0.96338 0.94155 0.94994 1.21611 1.04545 0.96826 1.10071 1.18381 0.87163 0.92817 0.87011 1.19530 1.09254 0.96024 1.20824 0.90068 1.26181 0.96879 0.99055 0.95155 1.70330 1.09400 1.34157 1.12974 0.86597 0.78586 0.83491 0.79339 1.19230 1.20449 1.19261 1.68667 1.29826 1.03165 1.17388 1.23615 0.94388 1.03828 0.95202 0.93170 0.93625 0.89401 0.89875 0.93814 0.93460 0.89893 0.87605 0.87978 0.91667 0.91539 0.78373 0.77283 0.89197 0.88676 0.88631 0.91640 0.87583 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.79 101.05 1.09 1.29 16 2 O -0.37 -3.70 9.59 -58.60 -0.56 -4.26 16 3 C 0.23 2.34 1.04 -25.91 -0.03 2.31 16 4 O -0.38 -4.16 10.61 -58.60 -0.62 -4.78 16 5 C 0.03 0.27 10.81 101.05 1.09 1.36 16 6 C -0.13 -1.27 6.99 -25.92 -0.18 -1.45 16 7 C -0.11 -1.10 3.69 -89.81 -0.33 -1.43 16 8 C 0.16 2.10 5.51 -4.04 -0.02 2.08 16 9 N -0.76 -11.14 5.56 -65.23 -0.36 -11.50 16 10 C 0.67 13.76 8.51 -86.92 -0.74 13.02 16 11 O -0.47 -12.05 12.26 5.30 0.06 -11.98 16 12 N -0.67 -13.57 5.39 -15.79 -0.09 -13.65 16 13 C 0.39 9.66 7.41 -155.00 -1.15 8.51 16 14 C -0.36 -8.20 9.96 -38.89 -0.39 -8.59 16 15 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 16 C -0.31 -7.89 9.83 -38.66 -0.38 -8.27 16 17 C 0.27 7.78 6.55 -85.00 -0.56 7.22 16 18 C -0.43 -11.93 9.14 -37.74 -0.34 -12.27 16 19 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 20 C 0.06 1.52 5.50 -17.34 -0.10 1.43 16 21 N -0.65 -18.36 9.10 55.55 0.51 -17.85 16 22 Si 0.90 19.58 29.56 -169.99 -5.02 14.55 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 25 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 26 N -0.47 -13.53 5.74 -10.26 -0.06 -13.59 16 27 C -0.13 -1.29 7.22 -25.91 -0.19 -1.48 16 28 H 0.05 0.34 6.31 -51.93 -0.33 0.01 16 29 H 0.05 0.33 8.13 -51.93 -0.42 -0.09 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.38 7.40 -51.93 -0.38 -0.01 16 34 H 0.08 0.70 6.40 -51.93 -0.33 0.36 16 35 H 0.11 1.03 8.10 -51.93 -0.42 0.61 16 36 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.95 7.84 -51.93 -0.41 0.54 16 38 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 39 H 0.38 4.36 8.49 -40.82 -0.35 4.01 16 40 H 0.39 6.08 8.71 -40.82 -0.36 5.73 16 41 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 42 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 44 H 0.27 7.23 8.29 -40.82 -0.34 6.89 16 45 H 0.11 1.08 7.90 -51.93 -0.41 0.67 16 46 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 380.68 15.07 5.74 5.74 Total: -1.00 -34.75 380.68 -9.79 -44.54 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.76 Total: 10.28 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -2.62 Total: 2.51 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.00 Total: -56.60 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -1.12 Total: -21.02 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.75 -9.79 -44.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345897376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.090 kcal (2) G-P(sol) polarization free energy of solvation -34.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds