Wall clock time and date at job start Tue Mar 31 2020 18:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99584 * 2 1 4 4 O 1.42902 * 112.91040 * 289.55698 * 3 2 1 5 5 C 1.42900 * 113.99971 * 310.89169 * 4 3 2 6 6 C 1.53787 * 113.61309 * 60.81369 * 3 2 1 7 7 C 1.53777 * 87.08314 * 89.11403 * 6 3 2 8 8 C 1.52997 * 113.61486 * 139.97981 * 7 6 3 9 9 N 1.46505 * 109.47208 * 174.99995 * 8 7 6 10 10 C 1.34775 * 120.00086 * 180.02562 * 9 8 7 11 11 O 1.21577 * 119.99711 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99943 * 179.97438 * 10 9 8 13 13 C 1.39238 * 119.99960 * 185.06787 * 12 10 9 14 14 C 1.39691 * 119.57769 * 185.71391 * 13 12 10 15 15 C 1.38648 * 119.49438 * 179.73323 * 14 13 12 16 16 C 1.38348 * 118.67056 * 0.53270 * 15 14 13 17 17 C 1.40567 * 119.13483 * 359.73208 * 16 15 14 18 18 C 1.41334 * 119.79212 * 180.02562 * 17 16 15 19 19 H 1.08005 * 119.99528 * 359.97438 * 18 17 16 20 20 C 1.40021 * 120.00442 * 179.97438 * 18 17 16 21 21 N 1.30749 * 120.00166 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00233 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47232 * 60.00200 * 22 20 18 24 24 H 1.48502 * 109.47374 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47017 * 300.00360 * 22 20 18 26 26 N 1.31903 * 119.57507 * 5.99302 * 13 12 10 27 27 C 1.53784 * 113.61247 * 158.30710 * 3 2 1 28 28 H 1.08990 * 109.47433 * 304.76991 * 1 2 3 29 29 H 1.09003 * 109.47151 * 64.77481 * 1 2 3 30 30 H 1.09001 * 109.46712 * 184.77197 * 1 2 3 31 31 H 1.09001 * 109.46594 * 175.13359 * 5 4 3 32 32 H 1.08995 * 109.46604 * 295.13159 * 5 4 3 33 33 H 1.08994 * 109.47223 * 55.13388 * 5 4 3 34 34 H 1.09001 * 113.61189 * 334.56273 * 6 3 2 35 35 H 1.09003 * 113.61195 * 203.66306 * 6 3 2 36 36 H 1.09001 * 113.61337 * 270.79944 * 7 6 3 37 37 H 1.08994 * 109.47150 * 294.99765 * 8 7 6 38 38 H 1.09001 * 109.47043 * 55.00072 * 8 7 6 39 39 H 0.97000 * 119.99530 * 359.97438 * 9 8 7 40 40 H 0.96998 * 119.99618 * 5.07716 * 12 10 9 41 41 H 1.07998 * 120.24890 * 359.97438 * 14 13 12 42 42 H 1.07996 * 120.66213 * 180.24188 * 15 14 13 43 43 H 1.08000 * 120.43380 * 179.74767 * 16 15 14 44 44 H 0.96999 * 120.00337 * 179.97438 * 21 20 18 45 45 H 1.09001 * 113.61300 * 156.33880 * 27 3 2 46 46 H 1.08998 * 113.61400 * 25.43148 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 8 1.8338 1.9929 -1.2404 5 6 2.1898 1.2205 -2.3887 6 6 1.6329 2.1477 1.2302 7 6 2.8638 1.5417 1.9247 8 6 3.6423 2.5452 2.7778 9 7 4.7189 1.8507 3.4882 10 6 5.5405 2.5388 4.3055 11 8 5.3884 3.7360 4.4528 12 7 6.5306 1.8997 4.9595 13 6 7.3122 2.5881 5.8836 14 6 8.4104 1.9522 6.4674 15 6 9.1908 2.6411 7.3832 16 6 8.8480 3.9433 7.7006 17 6 7.7277 4.5260 7.0831 18 6 7.3652 5.8555 7.3968 19 1 7.9482 6.4204 8.1092 20 6 6.2504 6.4405 6.7839 21 7 5.5443 5.7566 5.9218 22 14 5.7718 8.1980 7.1979 23 1 6.8911 9.1104 6.8521 24 1 4.5645 8.5784 6.4213 25 1 5.4789 8.3023 8.6501 26 7 7.0029 3.8306 6.2006 27 6 3.4568 1.3358 0.5208 28 1 -0.3634 0.5860 0.8441 29 1 -0.3633 0.4380 -0.9297 30 1 -0.3633 -1.0241 0.0855 31 1 1.9468 1.7797 -3.2922 32 1 3.2592 1.0104 -2.3679 33 1 1.6351 0.2823 -2.3817 34 1 0.6866 1.8558 1.6857 35 1 1.7102 3.2222 1.0641 36 1 2.6535 0.6112 2.4521 37 1 4.0689 3.3149 2.1346 38 1 2.9693 3.0072 3.5001 39 1 4.8400 0.8954 3.3710 40 1 6.6987 0.9603 4.7863 41 1 8.6520 0.9329 6.2045 42 1 10.0464 2.1691 7.8431 43 1 9.4336 4.5050 8.4134 44 1 4.7718 6.1616 5.4975 45 1 4.0327 2.1883 0.1608 46 1 3.9829 0.3884 0.4037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001345897376.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:47 Heat of formation + Delta-G solvation = -54.097792 kcal Electronic energy + Delta-G solvation = -28856.334163 eV Core-core repulsion = 24747.534573 eV Total energy + Delta-G solvation = -4108.799590 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.53296 -40.96620 -39.47745 -37.57576 -37.06369 -35.89059 -34.82192 -34.75410 -32.17506 -30.96788 -28.96374 -28.18062 -27.56348 -27.03996 -26.39917 -23.96334 -23.16632 -22.71545 -21.48440 -20.65616 -19.71976 -18.99895 -18.37050 -18.00356 -17.20415 -16.83359 -16.70578 -16.38887 -16.24125 -16.06676 -15.70803 -15.56120 -15.48846 -15.06174 -14.79703 -14.65227 -14.57469 -14.12199 -13.69288 -13.66378 -13.41782 -13.10143 -12.86346 -12.77633 -12.70939 -12.54509 -12.37397 -12.28679 -12.00684 -11.96130 -11.76636 -11.54229 -11.45445 -10.95200 -10.85759 -10.81911 -10.72135 -9.89218 -9.78218 -9.10410 -8.73950 -8.00009 -6.38358 0.99836 1.31428 1.40837 1.52611 1.55889 1.83679 2.28814 2.43172 2.61024 2.64235 3.06703 3.31265 3.41887 3.56169 3.72096 3.99359 4.10689 4.27577 4.37144 4.39187 4.44502 4.50919 4.52538 4.63432 4.67127 4.70924 4.74028 4.78274 4.81478 4.86256 4.91402 4.97687 4.99503 5.02016 5.09667 5.25821 5.31774 5.54497 5.69218 5.74256 5.89268 5.95309 6.07186 6.34939 6.42896 6.45741 6.85144 7.10352 7.30789 8.05122 8.41448 8.60959 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014763 B = 0.002623 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1896.160776 B =10673.937500 C =12048.905688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.384 6.384 3 C 0.234 3.766 4 O -0.403 6.403 5 C 0.029 3.971 6 C -0.134 4.134 7 C -0.097 4.097 8 C 0.162 3.838 9 N -0.734 5.734 10 C 0.658 3.342 11 O -0.521 6.521 12 N -0.662 5.662 13 C 0.365 3.635 14 C -0.346 4.346 15 C -0.034 4.034 16 C -0.332 4.332 17 C 0.236 3.764 18 C -0.467 4.467 19 H 0.085 0.915 20 C 0.009 3.991 21 N -0.686 5.686 22 Si 0.975 3.025 23 H -0.262 1.262 24 H -0.274 1.274 25 H -0.260 1.260 26 N -0.507 5.507 27 C -0.131 4.131 28 H 0.055 0.945 29 H 0.044 0.956 30 H 0.106 0.894 31 H 0.097 0.903 32 H 0.045 0.955 33 H 0.050 0.950 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.405 0.595 40 H 0.417 0.583 41 H 0.132 0.868 42 H 0.137 0.863 43 H 0.104 0.896 44 H 0.269 0.731 45 H 0.098 0.902 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.544 -13.259 -14.181 22.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.304 6.304 3 C 0.157 3.843 4 O -0.324 6.324 5 C -0.067 4.067 6 C -0.172 4.172 7 C -0.115 4.115 8 C 0.038 3.962 9 N -0.395 5.395 10 C 0.357 3.643 11 O -0.389 6.389 12 N -0.312 5.312 13 C 0.125 3.875 14 C -0.371 4.371 15 C -0.058 4.058 16 C -0.355 4.355 17 C 0.111 3.889 18 C -0.498 4.498 19 H 0.103 0.897 20 C -0.216 4.216 21 N -0.305 5.305 22 Si 0.796 3.204 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.184 1.184 26 N -0.227 5.227 27 C -0.169 4.169 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.135 0.865 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.241 0.759 40 H 0.255 0.745 41 H 0.150 0.850 42 H 0.155 0.845 43 H 0.122 0.878 44 H 0.079 0.921 45 H 0.116 0.884 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -11.634 -11.696 -14.631 22.050 hybrid contribution 0.621 -0.484 0.358 0.865 sum -11.013 -12.179 -14.272 21.756 Atomic orbital electron populations 1.22956 0.79263 1.04118 1.01109 1.87982 1.21907 1.26534 1.94007 1.23918 0.94872 0.81494 0.83989 1.88052 1.87784 1.41200 1.15388 1.22750 0.99812 0.96510 0.87640 1.23548 0.99225 1.01294 0.93165 1.22415 0.95553 0.99348 0.94208 1.20949 0.87337 0.94118 0.93820 1.44949 1.33604 1.11816 1.49089 1.16696 0.80830 0.86284 0.80538 1.91344 1.71286 1.12586 1.63670 1.42388 1.33460 1.13745 1.41646 1.18850 0.88828 0.90876 0.88963 1.20923 1.02420 1.02487 1.11292 1.21023 0.97225 0.93162 0.94401 1.21797 1.04407 0.98417 1.10834 1.18883 0.88474 0.93708 0.87861 1.19861 1.10748 0.96832 1.22351 0.89676 1.27043 0.96363 1.03563 0.94651 1.70541 1.09755 1.36008 1.14192 0.85395 0.78234 0.77550 0.79267 1.18622 1.19910 1.18407 1.68626 1.30952 1.04999 1.18078 1.23577 0.94585 1.03959 0.94737 0.92619 0.93687 0.87599 0.88447 0.93618 0.93150 0.88593 0.88284 0.86504 0.93244 0.93274 0.75903 0.74538 0.85004 0.84483 0.87807 0.92072 0.88379 0.89285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.79 113.37 1.22 1.49 16 2 O -0.38 -6.82 9.59 -126.63 -1.21 -8.04 16 3 C 0.23 4.38 1.04 31.12 0.03 4.41 16 4 O -0.40 -8.32 10.61 -126.63 -1.34 -9.67 16 5 C 0.03 0.44 10.81 113.37 1.23 1.67 16 6 C -0.13 -2.41 6.99 31.12 0.22 -2.19 16 7 C -0.10 -1.77 3.69 -10.27 -0.04 -1.81 16 8 C 0.16 4.32 5.51 86.38 0.48 4.79 16 9 N -0.73 -20.97 5.56 -478.55 -2.66 -23.63 16 10 C 0.66 27.39 8.51 179.06 1.52 28.91 16 11 O -0.52 -27.94 12.26 -3.96 -0.05 -27.99 16 12 N -0.66 -26.00 5.39 -322.13 -1.74 -27.74 16 13 C 0.36 18.04 7.41 133.27 0.99 19.03 16 14 C -0.35 -14.95 9.96 22.72 0.23 -14.72 16 15 C -0.03 -1.50 10.15 22.39 0.23 -1.27 16 16 C -0.33 -17.09 9.83 22.86 0.22 -16.86 16 17 C 0.24 13.98 6.55 40.19 0.26 14.24 16 18 C -0.47 -27.21 9.14 23.46 0.21 -26.99 16 19 H 0.09 4.63 7.85 -2.91 -0.02 4.61 16 20 C 0.01 0.52 5.50 85.29 0.47 0.99 16 21 N -0.69 -40.53 9.10 21.84 0.20 -40.34 16 22 Si 0.97 41.63 29.56 68.60 2.03 43.66 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 24 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 26 N -0.51 -29.87 5.74 -186.37 -1.07 -30.94 16 27 C -0.13 -2.38 7.22 31.12 0.22 -2.15 16 28 H 0.06 0.65 6.31 -2.39 -0.02 0.63 16 29 H 0.04 0.58 8.13 -2.39 -0.02 0.56 16 30 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.05 0.73 7.40 -2.39 -0.02 0.72 16 34 H 0.10 1.46 6.40 -2.39 -0.02 1.44 16 35 H 0.10 1.92 8.10 -2.39 -0.02 1.90 16 36 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 37 H 0.05 1.49 7.84 -2.39 -0.02 1.47 16 38 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.41 8.28 8.49 -92.71 -0.79 7.49 16 40 H 0.42 11.85 8.71 -92.71 -0.81 11.04 16 41 H 0.13 4.53 8.06 -2.91 -0.02 4.51 16 42 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 43 H 0.10 4.98 8.06 -2.91 -0.02 4.96 16 44 H 0.27 15.03 8.29 -92.71 -0.77 14.26 16 45 H 0.10 1.95 7.90 -2.39 -0.02 1.93 16 46 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 Total: -1.00 -79.01 380.68 1.07 -77.94 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.58 Total: 37.21 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: 7.50 Total: 9.53 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -5.27 Total: -122.65 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -2.61 Total: -45.69 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -79.01 1.07 -77.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001345897376.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.842 kcal (2) G-P(sol) polarization free energy of solvation -79.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds