Wall clock time and date at job start Tue Mar 31 2020 18:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99766 * 2 1 4 4 C 1.46897 * 110.99648 * 123.94714 * 2 1 3 5 5 C 1.50709 * 109.46987 * 170.00049 * 4 2 1 6 6 C 1.35135 * 125.61225 * 90.00120 * 5 4 2 7 7 C 1.40363 * 107.11170 * 180.02562 * 6 5 4 8 8 C 1.36538 * 106.70837 * 0.02562 * 7 6 5 9 9 C 1.46662 * 125.98445 * 179.97438 * 8 7 6 10 10 O 1.21693 * 120.00159 * 7.25765 * 9 8 7 11 11 N 1.34783 * 119.99552 * 187.26031 * 9 8 7 12 12 C 1.46956 * 120.59659 * 6.40438 * 11 9 8 13 13 C 1.53372 * 108.63850 * 235.20680 * 12 11 9 14 14 N 1.46968 * 108.63246 * 310.57643 * 13 12 11 15 15 C 1.34772 * 120.59573 * 235.19942 * 14 13 12 16 16 O 1.21692 * 119.99764 * 355.08666 * 15 14 13 17 17 C 1.46369 * 120.00270 * 175.08434 * 15 14 13 18 18 H 1.08004 * 119.99670 * 14.94636 * 17 15 14 19 19 C 1.40044 * 120.00305 * 194.94378 * 17 15 14 20 20 N 1.30674 * 120.00217 * 181.86344 * 19 17 15 21 21 Si 1.86802 * 119.99873 * 1.86689 * 19 17 15 22 22 H 1.48504 * 109.47076 * 275.24350 * 21 19 17 23 23 H 1.48495 * 109.47498 * 35.24381 * 21 19 17 24 24 H 1.48505 * 109.47140 * 155.24659 * 21 19 17 25 25 C 1.46963 * 118.80825 * 55.47953 * 14 13 12 26 26 C 1.46963 * 120.58841 * 186.38883 * 11 9 8 27 27 O 1.33924 * 125.61657 * 270.29881 * 5 4 2 28 28 H 1.09001 * 109.47403 * 296.04708 * 1 2 3 29 29 H 1.08998 * 109.47499 * 56.05536 * 1 2 3 30 30 H 1.09004 * 109.46668 * 176.04985 * 1 2 3 31 31 H 1.08997 * 109.47096 * 183.95115 * 3 2 1 32 32 H 1.09001 * 109.46843 * 303.95375 * 3 2 1 33 33 H 1.08997 * 109.47179 * 63.94527 * 3 2 1 34 34 H 1.09001 * 109.47209 * 50.00723 * 4 2 1 35 35 H 1.08995 * 109.47821 * 290.00151 * 4 2 1 36 36 H 1.08004 * 126.44038 * 0.02562 * 6 5 4 37 37 H 1.07998 * 126.64233 * 180.02562 * 7 6 5 38 38 H 1.09003 * 109.61121 * 115.46244 * 12 11 9 39 39 H 1.08997 * 109.61179 * 354.95773 * 12 11 9 40 40 H 1.09004 * 109.61057 * 190.83464 * 13 12 11 41 41 H 1.08999 * 109.60776 * 70.31994 * 13 12 11 42 42 H 0.97007 * 119.99664 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.61154 * 64.26318 * 25 14 13 44 44 H 1.09002 * 109.60532 * 184.77279 * 25 14 13 45 45 H 1.08999 * 109.60634 * 244.53462 * 26 11 9 46 46 H 1.08998 * 109.61662 * 5.04960 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7658 1.1377 5 6 3.4818 -0.9524 0.9730 6 6 4.4360 -0.1142 1.4345 7 6 5.6766 -0.6580 1.0666 8 6 5.4132 -1.8145 0.3904 9 6 6.4108 -2.7225 -0.1852 10 8 7.5945 -2.5427 0.0324 11 7 6.0165 -3.7560 -0.9552 12 6 4.6066 -3.9054 -1.3420 13 6 4.1256 -5.2973 -0.9135 14 7 5.0981 -6.2949 -1.3818 15 6 4.7038 -7.3284 -2.1517 16 8 3.5221 -7.4926 -2.3912 17 6 5.6970 -8.2534 -2.6998 18 1 6.7022 -8.2626 -2.3048 19 6 5.3440 -9.1265 -3.7363 20 7 6.2202 -9.9774 -4.2008 21 14 3.6205 -9.0746 -4.4548 22 1 2.7137 -9.9099 -3.6270 23 1 3.1304 -7.6728 -4.4652 24 1 3.6471 -9.5999 -5.8436 25 6 6.5070 -6.1485 -0.9903 26 6 6.9889 -4.7535 -1.4234 27 8 4.0743 -1.9733 0.3404 28 1 -0.3634 0.4513 0.9233 29 1 -0.3634 0.5738 -0.8525 30 1 -0.3633 -1.0253 -0.0708 31 1 3.0827 1.3433 -0.0708 32 1 1.5897 1.9163 -0.8525 33 1 1.7042 1.8724 0.9232 34 1 1.5090 -1.7406 1.1757 35 1 1.7975 -0.2246 2.0628 36 1 4.2743 0.8019 1.9833 37 1 6.6507 -0.2421 1.2776 38 1 4.5108 -3.8019 -2.4228 39 1 4.0080 -3.1423 -0.8446 40 1 3.1509 -5.5002 -1.3573 41 1 4.0518 -5.3404 0.1731 42 1 5.9756 -10.5818 -4.9190 43 1 6.5988 -6.2508 0.0909 44 1 7.1054 -6.9138 -1.4848 45 1 7.0627 -4.7105 -2.5100 46 1 7.9636 -4.5507 -0.9797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362233436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:36 Heat of formation + Delta-G solvation = -23.969341 kcal Electronic energy + Delta-G solvation = -29583.917427 eV Core-core repulsion = 25476.424304 eV Total energy + Delta-G solvation = -4107.493123 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.97681 -39.86776 -38.28787 -37.80682 -36.27417 -33.64221 -33.05912 -32.88888 -31.47587 -30.87086 -28.23622 -27.99415 -26.94634 -26.19204 -23.78174 -23.16519 -22.29146 -21.86733 -20.97217 -20.33626 -19.05690 -17.51005 -16.85033 -16.80046 -16.38313 -16.05377 -15.71183 -15.56777 -15.46644 -14.93327 -14.91010 -14.56260 -14.38153 -14.01714 -13.89079 -13.41485 -13.32997 -13.19553 -12.98092 -12.77841 -12.49453 -12.25358 -12.22020 -12.13577 -12.01193 -11.83815 -11.82412 -11.14680 -11.08843 -10.90344 -10.78632 -10.42082 -10.20203 -10.15667 -9.46979 -9.07390 -9.01571 -8.84466 -8.58899 -7.93254 -7.52078 -6.64466 -4.88651 0.89448 2.08333 2.35624 3.00156 3.15126 3.42906 3.48418 3.59088 3.74943 4.11959 4.16881 4.24642 4.48974 4.54565 4.65613 4.69968 4.78273 4.91565 4.98284 5.15211 5.16588 5.20453 5.23775 5.34153 5.41805 5.46366 5.49325 5.52043 5.54749 5.58765 5.67757 5.78218 5.89584 6.13761 6.16229 6.18108 6.22336 6.37857 6.44285 6.48006 6.59515 6.77037 6.98551 7.37313 7.53740 7.81393 8.03281 8.24810 8.65548 9.06483 9.95680 10.35869 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.003181 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.879184 B = 8799.810006 C =10387.106311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.017 3.983 4 C 0.126 3.874 5 C 0.020 3.980 6 C -0.214 4.214 7 C -0.122 4.122 8 C -0.066 4.066 9 C 0.598 3.402 10 O -0.529 6.529 11 N -0.595 5.595 12 C 0.078 3.922 13 C 0.109 3.891 14 N -0.633 5.633 15 C 0.553 3.447 16 O -0.613 6.613 17 C -0.532 4.532 18 H 0.091 0.909 19 C 0.100 3.900 20 N -0.829 5.829 21 Si 0.964 3.036 22 H -0.280 1.280 23 H -0.255 1.255 24 H -0.323 1.323 25 C 0.107 3.893 26 C 0.097 3.903 27 O -0.143 6.143 28 H 0.028 0.972 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.028 0.972 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.152 0.848 37 H 0.159 0.841 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.099 0.901 41 H 0.051 0.949 42 H 0.282 0.718 43 H 0.052 0.948 44 H 0.114 0.886 45 H 0.078 0.922 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.687 21.749 10.541 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.131 4.131 4 C -0.001 4.001 5 C -0.033 4.033 6 C -0.234 4.234 7 C -0.142 4.142 8 C -0.118 4.118 9 C 0.386 3.614 10 O -0.408 6.408 11 N -0.326 5.326 12 C -0.044 4.044 13 C -0.016 4.016 14 N -0.368 5.368 15 C 0.363 3.637 16 O -0.504 6.504 17 C -0.567 4.567 18 H 0.109 0.891 19 C -0.118 4.118 20 N -0.459 5.459 21 Si 0.797 3.203 22 H -0.206 1.206 23 H -0.180 1.180 24 H -0.255 1.255 25 C -0.017 4.017 26 C -0.026 4.026 27 O -0.039 6.039 28 H 0.047 0.953 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.047 0.953 34 H 0.117 0.883 35 H 0.088 0.912 36 H 0.170 0.830 37 H 0.177 0.823 38 H 0.094 0.906 39 H 0.129 0.871 40 H 0.117 0.883 41 H 0.070 0.930 42 H 0.092 0.908 43 H 0.071 0.929 44 H 0.132 0.868 45 H 0.097 0.903 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.549 21.094 9.845 24.182 hybrid contribution -0.766 0.539 0.544 1.083 sum -7.314 21.632 10.389 25.088 Atomic orbital electron populations 1.22417 0.85993 1.03009 1.00875 1.61896 1.08478 1.14405 1.42070 1.22525 1.01741 0.88134 1.00692 1.20585 0.86273 1.00455 0.92765 1.22650 0.95259 0.88355 0.96996 1.21534 0.91584 1.02521 1.07781 1.21873 0.99788 0.94055 0.98516 1.22148 0.80695 1.00360 1.08573 1.16737 0.86270 0.79769 0.78596 1.90849 1.15504 1.72522 1.61941 1.48015 1.10253 1.24918 1.49422 1.22796 0.80669 0.99573 1.01388 1.21565 0.95126 0.86541 0.98350 1.47707 1.06722 1.27153 1.55225 1.18384 0.88508 0.79887 0.76957 1.90245 1.19950 1.76134 1.64119 1.20765 0.98429 1.17925 1.19607 0.89087 1.25780 1.00072 0.91529 0.94436 1.69542 1.36444 1.16578 1.23299 0.85301 0.80910 0.80233 0.73905 1.20625 1.17987 1.25470 1.22018 0.84383 0.96061 0.99271 1.22320 0.92376 0.87516 1.00347 1.84219 1.18745 1.41986 1.58970 0.95326 0.90794 0.90737 0.90704 0.91025 0.95348 0.88321 0.91154 0.83049 0.82315 0.90641 0.87073 0.88306 0.93031 0.90751 0.92926 0.86793 0.90344 0.88429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.57 60.07 0.57 0.73 16 2 N -0.54 -4.39 5.01 -252.72 -1.27 -5.65 16 3 C 0.02 0.12 9.27 60.06 0.56 0.67 16 4 C 0.13 0.97 5.49 -4.97 -0.03 0.94 16 5 C 0.02 0.20 6.21 -35.41 -0.22 -0.02 16 6 C -0.21 -2.02 9.36 -39.89 -0.37 -2.39 16 7 C -0.12 -1.41 10.63 -39.40 -0.42 -1.83 16 8 C -0.07 -0.90 6.82 -36.80 -0.25 -1.15 16 9 C 0.60 9.55 7.65 -12.86 -0.10 9.45 16 10 O -0.53 -9.52 16.31 5.19 0.08 -9.43 16 11 N -0.59 -9.48 2.95 -173.77 -0.51 -9.99 16 12 C 0.08 1.21 6.47 -3.60 -0.02 1.19 16 13 C 0.11 1.95 6.58 -3.59 -0.02 1.92 16 14 N -0.63 -13.35 2.94 -173.87 -0.51 -13.86 16 15 C 0.55 14.29 7.35 -12.99 -0.10 14.19 16 16 O -0.61 -17.20 11.41 5.20 0.06 -17.14 16 17 C -0.53 -14.53 9.36 -35.64 -0.33 -14.86 16 18 H 0.09 2.45 5.98 -52.48 -0.31 2.14 16 19 C 0.10 2.79 5.52 -17.37 -0.10 2.69 16 20 N -0.83 -23.18 13.92 55.55 0.77 -22.41 16 21 Si 0.96 25.01 26.07 -169.99 -4.43 20.58 16 22 H -0.28 -7.43 7.11 56.52 0.40 -7.03 16 23 H -0.25 -6.92 6.25 56.52 0.35 -6.56 16 24 H -0.32 -8.00 7.11 56.52 0.40 -7.60 16 25 C 0.11 1.93 6.54 -3.37 -0.02 1.91 16 26 C 0.10 1.57 6.59 -3.37 -0.02 1.54 16 27 O -0.14 -1.81 7.14 5.00 0.04 -1.77 16 28 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 30 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 31 H 0.07 0.57 6.31 -51.93 -0.33 0.25 16 32 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 33 H 0.03 0.16 8.14 -51.93 -0.42 -0.27 16 34 H 0.10 0.72 8.06 -51.93 -0.42 0.30 16 35 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 36 H 0.15 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.11 1.57 3.81 -54.95 -0.21 1.36 16 40 H 0.10 1.89 7.02 -51.93 -0.36 1.52 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.28 7.30 8.29 -40.82 -0.34 6.96 16 43 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.11 2.17 5.33 -51.93 -0.28 1.89 16 45 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 46 H 0.10 1.49 7.03 -51.93 -0.37 1.13 16 LS Contribution 368.92 15.07 5.56 5.56 Total: -1.00 -33.32 368.92 -7.61 -40.93 By element: Atomic # 1 Polarization: 4.74 SS G_CDS: -6.53 Total: -1.78 kcal Atomic # 6 Polarization: 15.85 SS G_CDS: -0.87 Total: 14.98 kcal Atomic # 7 Polarization: -50.40 SS G_CDS: -1.52 Total: -51.91 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: 0.18 Total: -28.35 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -4.43 Total: 20.58 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.32 -7.61 -40.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362233436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.958 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds