Wall clock time and date at job start Tue Mar 31 2020 18:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46900 * 110.99766 * 2 1 4 4 C 1.46897 * 110.99648 * 123.94714 * 2 1 3 5 5 C 1.50709 * 109.46987 * 170.00049 * 4 2 1 6 6 C 1.35135 * 125.61225 * 90.00120 * 5 4 2 7 7 C 1.40363 * 107.11170 * 180.02562 * 6 5 4 8 8 C 1.36538 * 106.70837 * 0.02562 * 7 6 5 9 9 C 1.46662 * 125.98445 * 179.97438 * 8 7 6 10 10 O 1.21693 * 120.00159 * 7.25765 * 9 8 7 11 11 N 1.34783 * 119.99552 * 187.26031 * 9 8 7 12 12 C 1.46956 * 120.59659 * 6.40438 * 11 9 8 13 13 C 1.53372 * 108.63850 * 235.20680 * 12 11 9 14 14 N 1.46968 * 108.63246 * 310.57643 * 13 12 11 15 15 C 1.34772 * 120.59573 * 235.19942 * 14 13 12 16 16 O 1.21692 * 119.99764 * 355.08666 * 15 14 13 17 17 C 1.46369 * 120.00270 * 175.08434 * 15 14 13 18 18 H 1.08004 * 119.99670 * 14.94636 * 17 15 14 19 19 C 1.40044 * 120.00305 * 194.94378 * 17 15 14 20 20 N 1.30674 * 120.00217 * 181.86344 * 19 17 15 21 21 Si 1.86802 * 119.99873 * 1.86689 * 19 17 15 22 22 H 1.48504 * 109.47076 * 275.24350 * 21 19 17 23 23 H 1.48495 * 109.47498 * 35.24381 * 21 19 17 24 24 H 1.48505 * 109.47140 * 155.24659 * 21 19 17 25 25 C 1.46963 * 118.80825 * 55.47953 * 14 13 12 26 26 C 1.46963 * 120.58841 * 186.38883 * 11 9 8 27 27 O 1.33924 * 125.61657 * 270.29881 * 5 4 2 28 28 H 1.09001 * 109.47403 * 296.04708 * 1 2 3 29 29 H 1.08998 * 109.47499 * 56.05536 * 1 2 3 30 30 H 1.09004 * 109.46668 * 176.04985 * 1 2 3 31 31 H 1.08997 * 109.47096 * 183.95115 * 3 2 1 32 32 H 1.09001 * 109.46843 * 303.95375 * 3 2 1 33 33 H 1.08997 * 109.47179 * 63.94527 * 3 2 1 34 34 H 1.09001 * 109.47209 * 50.00723 * 4 2 1 35 35 H 1.08995 * 109.47821 * 290.00151 * 4 2 1 36 36 H 1.08004 * 126.44038 * 0.02562 * 6 5 4 37 37 H 1.07998 * 126.64233 * 180.02562 * 7 6 5 38 38 H 1.09003 * 109.61121 * 115.46244 * 12 11 9 39 39 H 1.08997 * 109.61179 * 354.95773 * 12 11 9 40 40 H 1.09004 * 109.61057 * 190.83464 * 13 12 11 41 41 H 1.08999 * 109.60776 * 70.31994 * 13 12 11 42 42 H 0.97007 * 119.99664 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.61154 * 64.26318 * 25 14 13 44 44 H 1.09002 * 109.60532 * 184.77279 * 25 14 13 45 45 H 1.08999 * 109.60634 * 244.53462 * 26 11 9 46 46 H 1.08998 * 109.61662 * 5.04960 * 26 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7658 1.1377 5 6 3.4818 -0.9524 0.9730 6 6 4.4360 -0.1142 1.4345 7 6 5.6766 -0.6580 1.0666 8 6 5.4132 -1.8145 0.3904 9 6 6.4108 -2.7225 -0.1852 10 8 7.5945 -2.5427 0.0324 11 7 6.0165 -3.7560 -0.9552 12 6 4.6066 -3.9054 -1.3420 13 6 4.1256 -5.2973 -0.9135 14 7 5.0981 -6.2949 -1.3818 15 6 4.7038 -7.3284 -2.1517 16 8 3.5221 -7.4926 -2.3912 17 6 5.6970 -8.2534 -2.6998 18 1 6.7022 -8.2626 -2.3048 19 6 5.3440 -9.1265 -3.7363 20 7 6.2202 -9.9774 -4.2008 21 14 3.6205 -9.0746 -4.4548 22 1 2.7137 -9.9099 -3.6270 23 1 3.1304 -7.6728 -4.4652 24 1 3.6471 -9.5999 -5.8436 25 6 6.5070 -6.1485 -0.9903 26 6 6.9889 -4.7535 -1.4234 27 8 4.0743 -1.9733 0.3404 28 1 -0.3634 0.4513 0.9233 29 1 -0.3634 0.5738 -0.8525 30 1 -0.3633 -1.0253 -0.0708 31 1 3.0827 1.3433 -0.0708 32 1 1.5897 1.9163 -0.8525 33 1 1.7042 1.8724 0.9232 34 1 1.5090 -1.7406 1.1757 35 1 1.7975 -0.2246 2.0628 36 1 4.2743 0.8019 1.9833 37 1 6.6507 -0.2421 1.2776 38 1 4.5108 -3.8019 -2.4228 39 1 4.0080 -3.1423 -0.8446 40 1 3.1509 -5.5002 -1.3573 41 1 4.0518 -5.3404 0.1731 42 1 5.9756 -10.5818 -4.9190 43 1 6.5988 -6.2508 0.0909 44 1 7.1054 -6.9138 -1.4848 45 1 7.0627 -4.7105 -2.5100 46 1 7.9636 -4.5507 -0.9797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362233436.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:36 Heat of formation + Delta-G solvation = -47.570489 kcal Electronic energy + Delta-G solvation = -29584.940849 eV Core-core repulsion = 25476.424304 eV Total energy + Delta-G solvation = -4108.516545 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.86677 -41.22724 -39.97470 -38.36557 -37.88931 -35.05348 -35.00729 -34.10449 -32.70491 -31.88846 -29.66811 -28.51645 -28.29885 -27.60614 -25.02144 -24.42640 -23.21534 -22.86621 -22.01052 -21.55285 -20.56493 -18.96496 -18.48674 -17.93659 -17.67355 -17.28438 -16.98011 -16.70190 -16.44563 -16.17962 -16.09799 -15.85588 -15.74817 -15.42047 -14.86167 -14.62718 -14.49891 -14.32089 -14.19411 -14.06849 -13.82911 -13.75806 -13.39479 -13.22088 -13.01445 -12.73087 -12.69136 -12.56749 -12.48222 -12.41706 -12.34381 -12.21703 -11.58321 -11.33127 -11.21434 -11.03342 -10.28308 -9.97935 -9.69456 -9.32316 -9.18814 -8.77913 -7.01754 -0.07622 1.26546 1.33018 1.38956 1.41088 1.64847 1.82003 2.02374 2.09649 2.35911 2.65337 3.05891 3.27250 3.28839 3.66679 3.82959 3.87693 3.92208 4.12182 4.13373 4.20128 4.25289 4.34750 4.39863 4.45772 4.52810 4.57311 4.65677 4.66509 4.71817 4.74884 4.79056 4.85272 4.94312 5.01850 5.05916 5.07611 5.10697 5.29454 5.39844 5.65587 5.81037 5.89876 5.94293 6.03336 6.14309 6.22809 6.60327 6.81182 7.06814 7.93044 8.26837 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.003181 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.879184 B = 8799.810006 C =10387.106311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.567 5.567 3 C 0.018 3.982 4 C 0.126 3.874 5 C 0.026 3.974 6 C -0.208 4.208 7 C -0.111 4.111 8 C -0.101 4.101 9 C 0.600 3.400 10 O -0.556 6.556 11 N -0.599 5.599 12 C 0.091 3.909 13 C 0.109 3.891 14 N -0.633 5.633 15 C 0.552 3.448 16 O -0.638 6.638 17 C -0.549 4.549 18 H 0.087 0.913 19 C 0.068 3.932 20 N -0.851 5.851 21 Si 1.008 2.992 22 H -0.291 1.291 23 H -0.276 1.276 24 H -0.304 1.304 25 C 0.109 3.891 26 C 0.105 3.895 27 O -0.158 6.158 28 H 0.042 0.958 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.045 0.955 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.183 0.817 37 H 0.167 0.833 38 H 0.068 0.932 39 H 0.132 0.868 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.291 0.709 43 H 0.067 0.933 44 H 0.101 0.899 45 H 0.074 0.926 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.776 24.068 11.892 27.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.292 5.292 3 C -0.130 4.130 4 C -0.001 4.001 5 C -0.026 4.026 6 C -0.227 4.227 7 C -0.131 4.131 8 C -0.153 4.153 9 C 0.390 3.610 10 O -0.437 6.437 11 N -0.330 5.330 12 C -0.031 4.031 13 C -0.014 4.014 14 N -0.366 5.366 15 C 0.360 3.640 16 O -0.532 6.532 17 C -0.585 4.585 18 H 0.105 0.895 19 C -0.147 4.147 20 N -0.482 5.482 21 Si 0.841 3.159 22 H -0.218 1.218 23 H -0.202 1.202 24 H -0.234 1.234 25 C -0.015 4.015 26 C -0.018 4.018 27 O -0.055 6.055 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.063 0.937 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.201 0.799 37 H 0.184 0.816 38 H 0.087 0.913 39 H 0.148 0.852 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.119 0.881 45 H 0.092 0.908 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.618 23.433 11.203 27.068 hybrid contribution -0.467 -0.044 0.241 0.527 sum -8.085 23.389 11.444 27.265 Atomic orbital electron populations 1.22427 0.84909 1.03105 1.01727 1.61864 1.09606 1.15153 1.42544 1.22522 1.01046 0.87764 1.01682 1.20744 0.84491 1.01079 0.93815 1.23288 0.96577 0.87300 0.95429 1.21846 0.90166 1.03260 1.07443 1.22163 1.01089 0.93060 0.96810 1.21776 0.80967 1.01301 1.11220 1.16962 0.86485 0.79611 0.77903 1.90822 1.16733 1.73268 1.62854 1.48027 1.10138 1.25107 1.49737 1.22673 0.80810 0.98477 1.01148 1.21710 0.93814 0.86844 0.99071 1.47650 1.08564 1.26455 1.53947 1.18277 0.87744 0.80672 0.77343 1.90219 1.20750 1.76996 1.65246 1.20992 0.98816 1.18701 1.19954 0.89468 1.26258 1.01779 0.91702 0.94993 1.69547 1.37216 1.17227 1.24160 0.84660 0.78434 0.78622 0.74226 1.21771 1.20203 1.23424 1.22088 0.82515 0.96960 0.99924 1.22162 0.92939 0.86513 1.00159 1.84090 1.18315 1.43225 1.59831 0.93897 0.90582 0.90980 0.91689 0.90847 0.93698 0.88129 0.88556 0.79943 0.81555 0.91317 0.85155 0.89589 0.91454 0.89835 0.91453 0.88052 0.90772 0.87392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 9.57 127.69 1.22 1.47 16 2 N -0.57 -7.65 5.01 -953.46 -4.78 -12.42 16 3 C 0.02 0.19 9.27 127.69 1.18 1.37 16 4 C 0.13 1.53 5.49 85.56 0.47 2.00 16 5 C 0.03 0.46 6.21 24.97 0.16 0.62 16 6 C -0.21 -3.24 9.36 22.07 0.21 -3.03 16 7 C -0.11 -2.33 10.63 22.39 0.24 -2.09 16 8 C -0.10 -2.63 6.82 24.07 0.16 -2.47 16 9 C 0.60 18.67 7.65 86.44 0.66 19.33 16 10 O -0.56 -19.66 16.31 -4.33 -0.07 -19.73 16 11 N -0.60 -18.67 2.95 -821.89 -2.42 -21.09 16 12 C 0.09 2.76 6.47 86.42 0.56 3.32 16 13 C 0.11 3.84 6.58 86.41 0.57 4.41 16 14 N -0.63 -26.62 2.94 -822.24 -2.42 -29.04 16 15 C 0.55 28.76 7.35 86.36 0.63 29.39 16 16 O -0.64 -36.12 11.41 -4.32 -0.05 -36.17 16 17 C -0.55 -30.38 9.36 24.83 0.23 -30.15 16 18 H 0.09 4.79 5.98 -2.91 -0.02 4.78 16 19 C 0.07 3.84 5.52 85.30 0.47 4.31 16 20 N -0.85 -47.69 13.92 21.83 0.30 -47.39 16 21 Si 1.01 51.84 26.07 68.60 1.79 53.63 16 22 H -0.29 -15.31 7.11 99.48 0.71 -14.61 16 23 H -0.28 -15.01 6.25 99.48 0.62 -14.39 16 24 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 25 C 0.11 3.90 6.54 86.56 0.57 4.46 16 26 C 0.11 3.36 6.59 86.56 0.57 3.93 16 27 O -0.16 -3.70 7.14 -5.01 -0.04 -3.73 16 28 H 0.04 0.29 8.14 -2.39 -0.02 0.27 16 29 H 0.08 0.70 8.12 -2.39 -0.02 0.68 16 30 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 31 H 0.06 0.82 6.31 -2.39 -0.02 0.80 16 32 H 0.07 0.75 8.12 -2.39 -0.02 0.73 16 33 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.10 1.20 8.06 -2.39 -0.02 1.18 16 35 H 0.10 0.70 8.12 -2.39 -0.02 0.68 16 36 H 0.18 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 38 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.13 3.51 3.81 -50.18 -0.19 3.32 16 40 H 0.09 3.27 7.02 -2.39 -0.02 3.26 16 41 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.29 14.98 8.29 -92.70 -0.77 14.21 16 43 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.10 3.91 5.33 -2.39 -0.01 3.90 16 45 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.11 3.25 7.03 -2.39 -0.02 3.23 16 Total: -1.00 -71.05 368.92 0.96 -70.09 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: 0.74 Total: 8.99 kcal Atomic # 6 Polarization: 28.97 SS G_CDS: 7.90 Total: 36.87 kcal Atomic # 7 Polarization: -100.63 SS G_CDS: -9.31 Total: -109.94 kcal Atomic # 8 Polarization: -59.48 SS G_CDS: -0.16 Total: -59.63 kcal Atomic # 14 Polarization: 51.84 SS G_CDS: 1.79 Total: 53.63 kcal Total: -71.05 0.96 -70.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362233436.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.516 kcal (2) G-P(sol) polarization free energy of solvation -71.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds