Wall clock time and date at job start Tue Mar 31 2020 18:45:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 114.00037 * 2 1 4 4 C 1.52999 * 109.47019 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47334 * 65.64201 * 4 3 2 6 6 C 1.36874 * 119.99949 * 94.14478 * 5 4 3 7 7 H 1.08006 * 119.99839 * 232.97931 * 6 5 4 8 8 C 1.39045 * 120.00198 * 52.97223 * 6 5 4 9 9 N 1.31361 * 120.00345 * 198.68947 * 8 6 5 10 10 Si 1.86804 * 119.99794 * 18.69382 * 8 6 5 11 11 H 1.48496 * 109.46968 * 94.70062 * 10 8 6 12 12 H 1.48502 * 109.47059 * 214.69703 * 10 8 6 13 13 H 1.48495 * 109.47235 * 334.69791 * 10 8 6 14 14 C 1.34777 * 120.00555 * 274.14470 * 5 4 3 15 15 O 1.21598 * 119.99171 * 357.35382 * 14 5 4 16 16 C 1.47733 * 120.00336 * 177.36037 * 14 5 4 17 17 C 1.39685 * 120.11957 * 40.37771 * 16 14 5 18 18 C 1.37955 * 119.98719 * 179.74247 * 17 16 14 19 19 C 1.38272 * 120.22794 * 0.55661 * 18 17 16 20 20 C 1.38963 * 120.23857 * 359.70041 * 19 18 17 21 21 N 1.39969 * 119.99678 * 180.02562 * 20 19 18 22 22 C 1.34774 * 120.00054 * 143.96305 * 21 20 19 23 23 O 1.21587 * 120.00479 * 3.99254 * 22 21 20 24 24 N 1.34780 * 119.99953 * 183.99833 * 22 21 20 25 25 C 1.46506 * 119.99677 * 179.97438 * 24 22 21 26 26 C 1.46496 * 120.00455 * 359.97438 * 24 22 21 27 27 C 1.38607 * 120.00711 * 0.02562 * 20 19 18 28 28 H 1.09003 * 109.47099 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47172 * 299.99854 * 1 2 3 30 30 H 1.09001 * 109.47080 * 60.00309 * 1 2 3 31 31 H 1.09001 * 109.47069 * 59.99859 * 3 2 1 32 32 H 1.09002 * 109.47084 * 300.00168 * 3 2 1 33 33 H 1.08999 * 109.46721 * 185.64231 * 4 3 2 34 34 H 1.08998 * 109.46741 * 305.64050 * 4 3 2 35 35 H 0.96996 * 120.00730 * 179.97438 * 9 8 6 36 36 H 1.08004 * 120.00394 * 0.02562 * 17 16 14 37 37 H 1.08006 * 119.88747 * 180.27256 * 18 17 16 38 38 H 1.08006 * 119.88112 * 179.71690 * 19 18 17 39 39 H 0.97006 * 120.00417 * 323.96375 * 21 20 19 40 40 H 1.09003 * 109.47095 * 89.99932 * 25 24 22 41 41 H 1.09002 * 109.46721 * 209.99765 * 25 24 22 42 42 H 1.08999 * 109.47237 * 330.00019 * 25 24 22 43 43 H 1.09001 * 109.47165 * 89.99687 * 26 24 22 44 44 H 1.08993 * 109.47312 * 210.00549 * 26 24 22 45 45 H 1.09010 * 109.46671 * 330.00437 * 26 24 22 46 46 H 1.07994 * 120.11649 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 3.9768 0.5784 -1.2591 6 6 4.3493 1.3743 -2.3085 7 1 3.8993 1.2326 -3.2801 8 6 5.3069 2.3654 -2.1237 9 7 5.4068 3.3512 -2.9862 10 14 6.4513 2.2950 -0.6490 11 1 7.7199 1.6285 -1.0383 12 1 6.7404 3.6742 -0.1805 13 1 5.8035 1.5265 0.4441 14 6 4.0161 -0.7630 -1.3838 15 8 3.7313 -1.4701 -0.4364 16 6 4.4051 -1.3742 -2.6712 17 6 5.4481 -0.8253 -3.4210 18 6 5.8126 -1.4015 -4.6203 19 6 5.1413 -2.5153 -5.0900 20 6 4.0988 -3.0659 -4.3545 21 7 3.4231 -4.1938 -4.8345 22 6 2.9891 -5.1362 -3.9743 23 8 3.1198 -4.9727 -2.7766 24 7 2.4103 -6.2601 -4.4417 25 6 1.9392 -7.2847 -3.5066 26 6 2.2524 -6.4571 -5.8848 27 6 3.7281 -2.4984 -3.1455 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.9784 2.1754 0.1004 34 1 3.8506 0.5588 0.8343 35 1 6.0746 4.0428 -2.8572 36 1 5.9720 0.0472 -3.0596 37 1 6.6222 -0.9783 -5.1965 38 1 5.4284 -2.9591 -6.0319 39 1 3.2670 -4.2972 -5.7863 40 1 0.9029 -7.0812 -3.2365 41 1 2.0059 -8.2652 -3.9782 42 1 2.5580 -7.2701 -2.6095 43 1 3.1326 -6.9635 -6.2808 44 1 1.3676 -7.0649 -6.0738 45 1 2.1395 -5.4892 -6.3734 46 1 2.9184 -2.9251 -2.5722 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001468721329.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:45:58 Heat of formation + Delta-G solvation = -44.132334 kcal Electronic energy + Delta-G solvation = -29936.271435 eV Core-core repulsion = 25827.903979 eV Total energy + Delta-G solvation = -4108.367456 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.57075 -39.18167 -37.82175 -36.84406 -35.56439 -34.75161 -34.46213 -32.01632 -30.65493 -29.61169 -28.83088 -27.96920 -25.94409 -25.76181 -24.86218 -23.37174 -22.05209 -21.68660 -19.88159 -19.34619 -18.30325 -17.58485 -16.58931 -16.06079 -15.99229 -15.71114 -15.63551 -15.39073 -14.85998 -14.67684 -14.51988 -14.16174 -13.95690 -13.65657 -13.59981 -13.22704 -13.04456 -12.87286 -12.72585 -12.51500 -12.30035 -12.18123 -12.05039 -11.96119 -11.58424 -11.18807 -11.13896 -11.02283 -10.80837 -10.40049 -10.34248 -10.05435 -9.91646 -9.70700 -9.12845 -9.01956 -8.84890 -8.51501 -8.19441 -7.63033 -7.45761 -6.45653 -4.16243 1.72104 2.01510 2.55635 3.11705 3.20584 3.24494 3.33237 3.78244 3.92098 4.15756 4.40886 4.45611 4.65815 4.72693 4.97133 4.99754 5.08735 5.29096 5.42214 5.44831 5.54355 5.63242 5.68329 5.72320 5.86647 5.96223 6.00257 6.02800 6.04778 6.07322 6.10035 6.17019 6.29742 6.36253 6.51508 6.66037 6.70783 6.93366 6.98275 7.13549 7.35047 7.48408 7.63840 7.82639 7.84464 8.19257 8.34976 8.57814 9.02616 9.41173 9.82781 10.63524 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.012662 B = 0.004045 C = 0.003333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.723594 B = 6921.168888 C = 8398.547742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.365 6.365 3 C 0.048 3.952 4 C 0.118 3.882 5 N -0.467 5.467 6 C -0.340 4.340 7 H 0.098 0.902 8 C 0.072 3.928 9 N -0.860 5.860 10 Si 0.854 3.146 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.251 1.251 14 C 0.535 3.465 15 O -0.561 6.561 16 C -0.079 4.079 17 C -0.064 4.064 18 C -0.123 4.123 19 C -0.137 4.137 20 C 0.129 3.871 21 N -0.683 5.683 22 C 0.698 3.302 23 O -0.559 6.559 24 N -0.640 5.640 25 C 0.104 3.896 26 C 0.079 3.921 27 C -0.074 4.074 28 H 0.077 0.923 29 H 0.031 0.969 30 H 0.033 0.967 31 H 0.041 0.959 32 H 0.054 0.946 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.274 0.726 36 H 0.149 0.851 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.401 0.599 40 H 0.052 0.948 41 H 0.067 0.933 42 H 0.079 0.921 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.482 -12.758 -6.948 15.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.283 6.283 3 C -0.030 4.030 4 C -0.006 4.006 5 N -0.189 5.189 6 C -0.468 4.468 7 H 0.115 0.885 8 C -0.135 4.135 9 N -0.494 5.494 10 Si 0.678 3.322 11 H -0.198 1.198 12 H -0.207 1.207 13 H -0.175 1.175 14 C 0.324 3.676 15 O -0.442 6.442 16 C -0.083 4.083 17 C -0.083 4.083 18 C -0.142 4.142 19 C -0.158 4.158 20 C 0.036 3.964 21 N -0.332 5.332 22 C 0.400 3.600 23 O -0.433 6.433 24 N -0.379 5.379 25 C -0.039 4.039 26 C -0.064 4.064 27 C -0.095 4.095 28 H 0.096 0.904 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.166 0.834 37 H 0.141 0.859 38 H 0.134 0.866 39 H 0.238 0.762 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.098 0.902 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.358 -13.021 -5.624 15.162 hybrid contribution 0.260 0.463 -0.176 0.559 sum -5.099 -12.557 -5.799 14.742 Atomic orbital electron populations 1.22635 0.83064 1.01824 0.98906 1.88169 1.17741 1.27316 1.95100 1.23025 0.95573 0.84891 0.99461 1.21690 0.91167 0.98446 0.89284 1.43367 1.59247 1.03740 1.12555 1.18941 1.22071 1.14247 0.91509 0.88470 1.25528 0.96418 0.94801 0.96800 1.69735 1.33216 1.09603 1.36854 0.87233 0.82404 0.78147 0.84382 1.19849 1.20745 1.17450 1.18399 0.79127 0.82829 0.87258 1.90688 1.51353 1.61976 1.40199 1.19859 0.97344 0.95161 0.95900 1.21844 0.95781 0.97798 0.92917 1.20862 1.00319 0.95895 0.97096 1.20813 0.95455 0.98857 1.00627 1.17234 0.94603 0.88299 0.96250 1.42590 1.60196 1.20631 1.09779 1.15925 0.78753 0.79932 0.85409 1.91031 1.60813 1.78167 1.13331 1.46923 1.64268 1.19603 1.07087 1.21518 0.99687 0.89027 0.93700 1.21732 1.02110 1.02070 0.80512 1.21217 1.00015 0.93364 0.94867 0.90438 0.95060 0.94816 0.94042 0.92735 0.90089 0.90938 0.91548 0.83387 0.85873 0.86600 0.76212 0.92935 0.91411 0.90226 0.92541 0.90662 0.91551 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.37 -7.92 9.15 -49.06 -0.45 -8.37 16 3 C 0.05 0.98 6.28 37.16 0.23 1.21 16 4 C 0.12 2.66 3.90 -4.05 -0.02 2.64 16 5 N -0.47 -11.54 1.85 -115.93 -0.21 -11.76 16 6 C -0.34 -8.65 6.40 -15.00 -0.10 -8.74 16 7 H 0.10 2.68 7.60 -52.48 -0.40 2.28 16 8 C 0.07 1.83 4.79 -17.45 -0.08 1.74 16 9 N -0.86 -22.73 13.95 55.50 0.77 -21.96 16 10 Si 0.85 19.53 26.56 -169.99 -4.51 15.02 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 12 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.25 -5.71 5.43 56.52 0.31 -5.41 16 14 C 0.53 13.72 6.86 -12.38 -0.08 13.64 16 15 O -0.56 -15.72 15.51 -8.55 -0.13 -15.85 16 16 C -0.08 -1.83 5.36 -104.99 -0.56 -2.40 16 17 C -0.06 -1.37 8.14 -39.14 -0.32 -1.68 16 18 C -0.12 -2.14 10.02 -39.67 -0.40 -2.54 16 19 C -0.14 -2.15 9.96 -39.30 -0.39 -2.54 16 20 C 0.13 2.29 6.27 -83.74 -0.53 1.76 16 21 N -0.68 -9.67 5.21 -14.26 -0.07 -9.74 16 22 C 0.70 11.01 8.11 -86.92 -0.71 10.31 16 23 O -0.56 -11.60 13.43 5.29 0.07 -11.53 16 24 N -0.64 -7.18 3.27 -195.33 -0.64 -7.82 16 25 C 0.10 1.00 10.44 59.85 0.62 1.62 16 26 C 0.08 0.52 10.24 59.84 0.61 1.13 16 27 C -0.07 -1.60 8.28 -38.96 -0.32 -1.92 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.75 5.38 -51.93 -0.28 1.47 16 34 H 0.07 1.69 7.41 -51.93 -0.38 1.31 16 35 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 36 H 0.15 3.37 5.91 -52.48 -0.31 3.06 16 37 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 38 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 39 H 0.40 4.04 6.52 -40.82 -0.27 3.77 16 40 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.43 8.07 -51.93 -0.42 0.01 16 42 H 0.08 0.93 7.42 -51.93 -0.39 0.55 16 43 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.07 0.35 8.07 -51.93 -0.42 -0.07 16 45 H 0.07 0.37 6.31 -51.92 -0.33 0.05 16 46 H 0.14 3.33 6.31 -52.49 -0.33 3.00 16 LS Contribution 375.07 15.07 5.65 5.65 Total: -1.00 -34.64 375.07 -7.00 -41.65 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -6.56 Total: 8.84 kcal Atomic # 6 Polarization: 16.80 SS G_CDS: -0.92 Total: 15.88 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.15 Total: -51.28 kcal Atomic # 8 Polarization: -35.25 SS G_CDS: -0.51 Total: -35.76 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.51 Total: 15.02 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.64 -7.00 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001468721329.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.485 kcal (2) G-P(sol) polarization free energy of solvation -34.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds